Identification and in vitro deoxynucleotidylation of the terminal protein of the linear plasmid pAL1 of Arthrobacter nitroguajacolicus Rü61a

FEMS Microbiology Letters

Volumn 304, Issue 2, 2010, Pages 169-176

  Kolkenbrock, Stephan ^a   Fetzner, Susanne ^a  

^a UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

Arthrobacter; Linear plasmid; Protein primer; Telomere; Terminal protein

Indexed keywords

BACTERIAL PROTEIN; DEOXYCYTIDINE PHOSPHATE DEAMINASE; DNA BINDING PROTEIN; MALTOSE BINDING PROTEIN;

AMINO ACID SEQUENCE; ARTHROBACTER; ARTHROBACTER NITROGUAJACOLICUS; ARTICLE; DNA SEQUENCE; DNA SYNTHESIS; GEL MOBILITY SHIFT ASSAY; IN VITRO STUDY; LONG TERMINAL REPEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMID; PRIORITY JOURNAL; PROTEIN ANALYSIS; REPLICON; STREPTOMYCES;

AMINO ACID SEQUENCE; ARTHROBACTER; BACTERIAL PROTEINS; DEOXYRIBONUCLEOSIDES; DNA-BINDING PROTEINS; ELECTROPHORETIC MOBILITY SHIFT ASSAY; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PLASMIDS; PROTEIN PROCESSING, POST-TRANSLATIONAL; RECOMBINANT FUSION PROTEINS; SEQUENCE ALIGNMENT;

ARTHROBACTER; ARTHROBACTER NITROGUAJACOLICUS; STREPTOMYCES;

EID: 77149121753     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2010.01900.x     Document Type: Article

References (33)

1. Bao K Cohen SN (2001) Terminal proteins essential for the replication of linear plasmids and chromosomes in Streptomyces. Gene Dev 15 : 1518 1527.
2. Bao K Cohen SN (2003) Recruitment of terminal protein to the ends of Streptomyces linear plasmids and chromosomes by a novel telomere-binding protein essential for linear DNA replication. Gene Dev 17 : 774 785.
3. Bao K Cohen SN (2004) Reverse transcriptase activity innate to DNA polymerase I and DNA topoisomerase I proteins of Streptomyces telomere complex. P Natl Acad Sci USA 101 : 14361 14366.
4. Chang PC Cohen SN (1994) Bidirectional replication from an internal origin in a linear Streptomyces plasmid. Science 265 : 952 954.
5. Chang PC, Kim ES Cohen SN (1996) Streptomyces linear plasmids that contain a phage-like, centrally located, replication origin. Mol Microbiol 22 : 789 800.
6. Chater KF Kinashi H (2007) Streptomyces linear plasmids: their discovery, functions, interactions with other replicons, and evolutionary significance. Microbiology Monographs, Vol. 7 (Meinhardt F Klassen R, eds), pp. 1 31. Springer-Verlag, Berlin.
7. Chen CW (2007) Streptomyces linear plasmids: replication and telomeres. Microbiology Monographs, Vol. 7 (Meinhardt F Klassen R, eds), pp. 33 61. Springer-Verlag, Berlin.
8. Choi JK, Tak KH, Jin LT, Hwang SY, Kwon TI Yoo GS (2002) Background-free, fast protein staining in sodium dodecyl sulfate polyacrylamide gel using counterion dyes, zincon and ethyl violet. Electrophoresis 23 : 4053 4059.
9. Coombs DH Pearson GD (1978) Filter-binding assay for covalent DNA-protein complexes: adenovirus DNA-terminal protein complex. P Natl Acad Sci USA 75 : 5291 5295.
10. Fetzner S, Kolkenbrock S Parschat K (2007) Catabolic linear plasmids. Microbiology Monographs, Vol. 7 (Meinhardt F Klassen R, eds), pp. 63 98. Springer-Verlag, Berlin.
11. Gartemann KH Eichenlaub R (2001) Isolation and characterization of IS1409, an insertion element of 4-chlorobenzoate-degrading Arthrobacter sp. strain TM1, and development of a system for transposon mutagenesis. J Bacteriol 183 : 3729 3736.
12. Grant SG, Jessee J, Bloom FR Hanahan D (1990) Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. P Natl Acad Sci USA 87 : 4645 4649.
13. Hanahan D (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166 : 557 580.
14. Huang TW Chen CW (2008) DNA polymerase I is not required for replication of linear chromosomes in Streptomyces. J Bacteriol 190 : 755 758.
15. Kalkus J, Menne R, Reh M Schlegel HG (1998) The terminal structures of linear plasmids from Rhodococcus opacus. Microbiology 144 : 1271 1279.
16. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 : 680 685.
17. Larkin MA, Blackshields G, Brown NP et al 2007) ClustalW and ClustalX version 2.0. Bioinformatics 23 : 2947 2948.
18. Overhage J, Sielker S, Homburg S, Parschat K Fetzner S (2005) Identification of large linear plasmids in Arthrobacter spp. encoding the degradation of quinaldine to anthranilate. Microbiology 151 : 491 500.
19. Parschat K, Hauer B, Kappl R, Kraft R, Hüttermann J Fetzner S (2003) Gene cluster of Arthrobacter ilicis Rü61a involved in the degradation of quinaldine to anthranilate: characterization and functional expression of the quinaldine 4-oxidase qoxLMS genes. J Biol Chem 278 : 27483 27494.
20. Parschat K, Overhage J, Strittmatter AW, Henne A, Gottschalk G Fetzner S (2007) Complete nucleotide sequence of the 113-kilobase linear catabolic plasmid pAL1 of Arthrobacter nitroguajacolicus Rü61a and transcriptional analysis of genes involved in quinaldine degradation. J Bacteriol 189 : 3855 3867.
21. Picardeau M, Le Dantec C Vincent V (2000) Analysis of the internal replication region of a mycobacterial linear plasmid. Microbiology 146 : 305 313.
22. Qin Z Cohen SN (1998) Replication at the telomeres of the Streptomyces linear plasmid pSLA2. Mol Microbiol 28 : 893 903.
23. Rainey FA, Ward-Rainey N, Kroppenstedt RM Stackebrandt E (1996) The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46 : 1088 1092.
24. Roche Molecular Biochemicals (1995) The DIG System User's Guide for Filter Hybridization. Boehringer Mannheim GmbH, Mannheim.
25. Sakaguchi K (1990) Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses. Microbiol Rev 54 : 66 74.
26. Sambrook J Russell DW (2001) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
27. Sandu C, Chiribau CB, Sachelaru P Brandsch R (2005) Plasmids for nicotine-dependent and -independent gene expression in Arthrobacter nicotinovorans and other Arthrobacter species. Appl Environ Microb 71 : 8920 8924.
28. Smith PK, Krohn RI, Hermanson GT, Mallia AK, Gartner FH, Provenzano MD, Fujimoto EK, Goeke NM, Olson BJ Klenk DC (1985) Measurement of protein using bicinchoninic acid. Anal Biochem 150 : 76 85.
29. Studier FW (2005) Protein production by auto-induction in high-density shaking cultures. Protein Expr Purif 41 : 207 234.
30. Warren R, Hsiao WW, Kudo H et al 2004) Functional characterization of a catabolic plasmid from polychlorinated-biphenyl-degrading Rhodococcus sp. strain RHA1. J Bacteriol 186 : 7783 7795.
31. Yang CC, Huang CH, Li CY, Tsay YG, Lee SC Chen CW (2002) The terminal proteins of linear Streptomyces chromosomes and plasmids: a novel class of replication priming proteins. Mol Microbiol 43 : 297 305.
32. Yang CC, Chen YH, Tsai HH, Huang CH, Huang TW Chen CW (2006) In vitro deoxynucleotidylation of the terminal protein of Streptomyces linear chromosomes. Appl Environ Microb 72 : 7959 7961.
33. Zhang R, Yang Y, Fang P et al 2006) Diversity of telomere palindromic sequences and replication genes among Streptomyces linear plasmids. Appl Environ Microb 72 : 5728 5733.