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Volumn 144, Issue 5, 1998, Pages 1271-1279

The terminal structures of linear plasmids from Rhodococcus opacus

Author keywords

Linear plasmid; Rhodococcus opacus; Terminal inverted repeat (TIR); Terminal protein (TP)

Indexed keywords

ARTICLE; NOCARDIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; RHODOCOCCUS; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TELOMERE;

EID: 0031781086     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-144-5-1271     Document Type: Article
Times cited : (23)

References (46)
  • 1
    • 0015545291 scopus 로고
    • Studies on a Gram-positive hydrogen bacterium, Nocardia opaca 1b. I. Description and physiological characterization
    • Aggag, M. & Schlegel, H. G. (1973). Studies on a Gram-positive hydrogen bacterium, Nocardia opaca 1b. I. Description and physiological characterization. Arch Microbiol 88, 299-318.
    • (1973) Arch Microbiol , vol.88 , pp. 299-318
    • Aggag, M.1    Schlegel, H.G.2
  • 4
    • 0027930540 scopus 로고
    • Bidirectional replication from an internal origin in a linear Streptomyces plasmid
    • Chang, P.-C. & Cohen, S. N. (1994). Bidirectional replication from an internal origin in a linear Streptomyces plasmid. Science 265, 952-954.
    • (1994) Science , vol.265 , pp. 952-954
    • Chang, P.-C.1    Cohen, S.N.2
  • 5
    • 0029882801 scopus 로고    scopus 로고
    • Complications and implications of linear bacterial chromosomes
    • Chen, C. W. (1996). Complications and implications of linear bacterial chromosomes. Trends Genet 12, 192-196.
    • (1996) Trends Genet , vol.12 , pp. 192-196
    • Chen, C.W.1
  • 6
    • 0027481124 scopus 로고
    • The conjugative plasmid SLP2 of Streptomyces lividans is a 50 kbp linear molecule
    • Chen, C. W., Yu, T.-W., Lin, Y.-S., Kieser, H. M. & Hopwood, D. A. (1993). The conjugative plasmid SLP2 of Streptomyces lividans is a 50 kbp linear molecule. Mol Microbiol 1, 925-932.
    • (1993) Mol Microbiol , vol.1 , pp. 925-932
    • Chen, C.W.1    Yu, T.-W.2    Lin, Y.-S.3    Kieser, H.M.4    Hopwood, D.A.5
  • 7
    • 0025758731 scopus 로고
    • A method for sequencing uncloned termini of linear plasmids
    • Court, D. A. & Bertrand, H. (1991). A method for sequencing uncloned termini of linear plasmids. Nucleic Acids Res 19, 1714.
    • (1991) Nucleic Acids Res , vol.19 , pp. 1714
    • Court, D.A.1    Bertrand, H.2
  • 8
    • 0026537146 scopus 로고
    • Fasciation induction by the phytopathogen Rhodococcus fascians depends upon a linear plasmid encoding a cytokinin synthase gene
    • Crespi, M., Messens, E., Caplan, A. B., Van Montagu, M. & Desomer, J. (1992). Fasciation induction by the phytopathogen Rhodococcus fascians depends upon a linear plasmid encoding a cytokinin synthase gene. EMBO J 11, 795-804.
    • (1992) EMBO J , vol.11 , pp. 795-804
    • Crespi, M.1    Messens, E.2    Caplan, A.B.3    Van Montagu, M.4    Desomer, J.5
  • 9
    • 0026628374 scopus 로고
    • Isopropylbenzene (cumene) - A new inducer substrate for the isolation of trichloroethene-degrading bacteria
    • Dabrock, B., Riedel, J., Bertram, J. & Gottschalk, G. (1992). Isopropylbenzene (cumene) - a new inducer substrate for the isolation of trichloroethene-degrading bacteria. Arch Microbiol 158, 9-13.
    • (1992) Arch Microbiol , vol.158 , pp. 9-13
    • Dabrock, B.1    Riedel, J.2    Bertram, J.3    Gottschalk, G.4
  • 10
    • 0028226687 scopus 로고
    • Identification and characterization of a transmissible linear plasmid from Rhodococcus erythropolis BD2 specifying isopropylbenzene and trichloroethene (TCE) catabolism
    • Dabrock, B., Keßeler, M., Averhoff, B. & Gottschalk, G. (1994). Identification and characterization of a transmissible linear plasmid from Rhodococcus erythropolis BD2 specifying isopropylbenzene and trichloroethene (TCE) catabolism. Appl Environ Microbiol 60, 853-860.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 853-860
    • Dabrock, B.1    Keßeler, M.2    Averhoff, B.3    Gottschalk, G.4
  • 11
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12, 387-395.
    • (1984) Nucleic Acids Res , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 12
    • 0039345644 scopus 로고
    • Nucleotide sequence at the termini of the DNA of Bacillus subtilis phage φ129
    • Escarmis, C. & Salas, M. (1981). Nucleotide sequence at the termini of the DNA of Bacillus subtilis phage φ129. Proc Nad Acad Sci USA 78, 1446-1450.
    • (1981) Proc Nad Acad Sci USA , vol.78 , pp. 1446-1450
    • Escarmis, C.1    Salas, M.2
  • 13
    • 0024440783 scopus 로고
    • Infectious circular DNA of human adenovirus type 5: Regeneration of viral DNA termini from molecules lacking terminal sequences
    • Graham, F. L., Rudy, J. & Brinkley, P. (1989). Infectious circular DNA of human adenovirus type 5: regeneration of viral DNA termini from molecules lacking terminal sequences. EMBO J 8, 2077-2085.
    • (1989) EMBO J , vol.8 , pp. 2077-2085
    • Graham, F.L.1    Rudy, J.2    Brinkley, P.3
  • 14
    • 0027956785 scopus 로고
    • The 387 kbp linear plasmid pPZG101 of Streptomyces rimosus and its interactions with the chromosome
    • Gravius, B., Glocker, D., Pigac, J., Pandza, K., Hranueli, D. & Cullum, J. (1994). The 387 kbp linear plasmid pPZG101 of Streptomyces rimosus and its interactions with the chromosome. Microbiology 140, 2271-2277.
    • (1994) Microbiology , vol.140 , pp. 2271-2277
    • Gravius, B.1    Glocker, D.2    Pigac, J.3    Pandza, K.4    Hranueli, D.5    Cullum, J.6
  • 15
    • 1842327489 scopus 로고    scopus 로고
    • Genes encoding the NAD-reducing hydrogenase of Rhodococcus opacus MR11
    • Grzeszik, C., Lubbers, M., Reh, M. & Schlegel, H. G. (1997a). Genes encoding the NAD-reducing hydrogenase of Rhodococcus opacus MR11. Microbiology 143, 1271-1286.
    • (1997) Microbiology , vol.143 , pp. 1271-1286
    • Grzeszik, C.1    Lubbers, M.2    Reh, M.3    Schlegel, H.G.4
  • 16
    • 0030899612 scopus 로고    scopus 로고
    • Location, catalytic activity, and subunit composition of NAD-reducing hydrogenases of some Alcaligenes strains and Rhodococcus opacus MR22
    • Grzeszik, C., Roß, K., Schneider, K., Reh, M. & Schlegel, H. G. (1997b). Location, catalytic activity, and subunit composition of NAD-reducing hydrogenases of some Alcaligenes strains and Rhodococcus opacus MR22. Arch Microbiol 167, 172-176.
    • (1997) Arch Microbiol , vol.167 , pp. 172-176
    • Grzeszik, C.1    Roß, K.2    Schneider, K.3    Reh, M.4    Schlegel, H.G.5
  • 17
    • 0020072055 scopus 로고
    • Analysis of linear plasmids isolated from Streptomyces: Association of protein with the ends of the plasmid DNA
    • Hirochika, H. & Sakaguchi, K (1982). Analysis of linear plasmids isolated from Streptomyces: association of protein with the ends of the plasmid DNA. Plasmid 7, 59-65.
    • (1982) Plasmid , vol.7 , pp. 59-65
    • Hirochika, H.1    Sakaguchi, K.2
  • 18
    • 0021419168 scopus 로고
    • A linear DNA plasmid from Streptomyces rochei with terminal repetition of 614 base pairs
    • Hirochika, H., Nakamura, K. & Sakaguchi, K. (1984). A linear DNA plasmid from Streptomyces rochei with terminal repetition of 614 base pairs. EMBO J 3, 761-766.
    • (1984) EMBO J , vol.3 , pp. 761-766
    • Hirochika, H.1    Nakamura, K.2    Sakaguchi, K.3
  • 19
    • 0025331034 scopus 로고
    • Hydrogen autotrophy of Nocardia opaca strains is encoded by linear megaplasmids
    • Kalkus, J., Reh, M. & Schlegel, H. G. (1990). Hydrogen autotrophy of Nocardia opaca strains is encoded by linear megaplasmids. J Gen Microbiol 136, 1145-1151.
    • (1990) J Gen Microbiol , vol.136 , pp. 1145-1151
    • Kalkus, J.1    Reh, M.2    Schlegel, H.G.3
  • 20
    • 0027496658 scopus 로고
    • The giant linear plasmid pHG207 from Rhodococcus sp. encoding hydrogen autotrophy: Characterization of the plasmid and its termini
    • Kalkus, J., Dörrie, C., Fischer, D., Reh, M. & Schlegel, H. G. (1993). The giant linear plasmid pHG207 from Rhodococcus sp. encoding hydrogen autotrophy: characterization of the plasmid and its termini. J Gen Microbiol 139, 2055-2065.
    • (1993) J Gen Microbiol , vol.139 , pp. 2055-2065
    • Kalkus, J.1    Dörrie, C.2    Fischer, D.3    Reh, M.4    Schlegel, H.G.5
  • 21
    • 84970058638 scopus 로고
    • Optimized hybridization of DNA blotted and fixed to nitrocellulose and nylon membranes
    • Khandjian, E. W. (1987). Optimized hybridization of DNA blotted and fixed to nitrocellulose and nylon membranes. Biol Technology 5, 165-167.
    • (1987) Biol Technology , vol.5 , pp. 165-167
    • Khandjian, E.W.1
  • 22
    • 0026095624 scopus 로고
    • Nucleotide sequence analysis of the unusually long terminal inverted repeats of a giant linear plasmid, SCP1
    • Kinashi, H., Shimaji-Murayama, M. & Hanafusa, T. (1991). Nucleotide sequence analysis of the unusually long terminal inverted repeats of a giant linear plasmid, SCP1. Plasmid 26, 123-130.
    • (1991) Plasmid , vol.26 , pp. 123-130
    • Kinashi, H.1    Shimaji-Murayama, M.2    Hanafusa, T.3
  • 23
    • 0028598687 scopus 로고
    • Rhodococcus opacus sp. nov., an unusual nutritionally versatile Rhodococcus species
    • Klatte, S., Kroppenstedt, R. M. & Rainey, F. A. (1994). Rhodococcus opacus sp. nov., an unusual nutritionally versatile Rhodococcus species. Syst Appl Microbiol 17, 355-360.
    • (1994) Syst Appl Microbiol , vol.17 , pp. 355-360
    • Klatte, S.1    Kroppenstedt, R.M.2    Rainey, F.A.3
  • 24
    • 0030047325 scopus 로고    scopus 로고
    • The unstable region of Streptomyces ambofaciens includes 210 kbp terminal inverted repeats flanking the extremities of the linear chromosomal DNA
    • Leblond, P., Fischer, G., Francou, F.-X., Berger, F., Guerineau, M. & Decaris, B. (1996). The unstable region of Streptomyces ambofaciens includes 210 kbp terminal inverted repeats flanking the extremities of the linear chromosomal DNA. Mol Microbiol 19, 261-271.
    • (1996) Mol Microbiol , vol.19 , pp. 261-271
    • Leblond, P.1    Fischer, G.2    Francou, F.-X.3    Berger, F.4    Guerineau, M.5    Decaris, B.6
  • 26
    • 0027751336 scopus 로고
    • The chromosomal DNA of Streptomyces lividans 66 is linear
    • Lin, Y.-S., Kieser, H. M., Hopwood, D. A. & Chen, C. W. (1993). The chromosomal DNA of Streptomyces lividans 66 is linear. Mol Microbiol 10, 923-933.
    • (1993) Mol Microbiol , vol.10 , pp. 923-933
    • Lin, Y.-S.1    Kieser, H.M.2    Hopwood, D.A.3    Chen, C.W.4
  • 27
    • 0023651116 scopus 로고
    • Restriction endonucleases for pulsed field mapping of bacterial genomes
    • McClelland, M., Jones, R., Patel, Y. & Nelson, M. (1987). Restriction endonucleases for pulsed field mapping of bacterial genomes. Nucleic Acids Res 15, 5985-6005.
    • (1987) Nucleic Acids Res , vol.15 , pp. 5985-6005
    • McClelland, M.1    Jones, R.2    Patel, Y.3    Nelson, M.4
  • 28
    • 0026756601 scopus 로고
    • Initiation of φ29 DNA replication occurs at the second 3′ nucleotide of the linear template: A sliding-back mechanism for protein-primed DNA replication
    • Mendez, J., Blanco, L., Esteban, J. A., Bernad, A. & Salas, M. (1992). Initiation of φ29 DNA replication occurs at the second 3′ nucleotide of the linear template: a sliding-back mechanism for protein-primed DNA replication. Proc Natl Acad Sci USA 89, 9579-9583.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 9579-9583
    • Mendez, J.1    Blanco, L.2    Esteban, J.A.3    Bernad, A.4    Salas, M.5
  • 29
    • 0025344277 scopus 로고
    • Isolation of prokaryotic RNA and detection of specific messenger-RNA with biotinylated probes
    • Oelmüller, U., Krüger, N., Steinbüchel, A. & Friedrich, C. G. (1990). Isolation of prokaryotic RNA and detection of specific messenger-RNA with biotinylated probes. J Microbiol Methods 11, 72-81.
    • (1990) J Microbiol Methods , vol.11 , pp. 72-81
    • Oelmüller, U.1    Krüger, N.2    Steinbüchel, A.3    Friedrich, C.G.4
  • 30
    • 0030934311 scopus 로고    scopus 로고
    • Characterization of large linear plasmids in mycobacteria
    • Picardeau, M. & Vincent, V. (1997). Characterization of large linear plasmids in mycobacteria. J Bacteriol 179, 2753-2756.
    • (1997) J Bacteriol , vol.179 , pp. 2753-2756
    • Picardeau, M.1    Vincent, V.2
  • 31
    • 0028962955 scopus 로고
    • Phylogenetic analysis of the genera Rhodococcus and Nocardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species
    • Rainey, F. A., Burghardt, J., Kroppenstedt, R. M., Klatte, S. & Stackebrandt, E. (1995). Phylogenetic analysis of the genera Rhodococcus and Nocardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species. Microbiology 141, 523-528.
    • (1995) Microbiology , vol.141 , pp. 523-528
    • Rainey, F.A.1    Burghardt, J.2    Kroppenstedt, R.M.3    Klatte, S.4    Stackebrandt, E.5
  • 32
    • 0025135456 scopus 로고
    • Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of Adeno-type viruses
    • Sakaguchi, K. (1990). Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of Adeno-type viruses. Microbiol Rev 54, 66-74.
    • (1990) Microbiol Rev , vol.54 , pp. 66-74
    • Sakaguchi, K.1
  • 34
    • 84968728354 scopus 로고
    • DNA sequencing with chain-terminating inhibitors
    • Sanger, F., Nicklen, H. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 77, 2611-2615.
    • (1977) Proc Natl Acad Sci USA , vol.77 , pp. 2611-2615
    • Sanger, F.1    Nicklen, H.2    Coulson, A.R.3
  • 35
    • 0021753750 scopus 로고
    • Content and localization of FMN, Fe-S clusters and nickel in the NAD-linked hydrogenase of Nocardia opaca 1b
    • Schneider, K., Cammack, R. & Schlegel, H. G. (1984). Content and localization of FMN, Fe-S clusters and nickel in the NAD-linked hydrogenase of Nocardia opaca 1b. Eur J Biochem 142, 75-84.
    • (1984) Eur J Biochem , vol.142 , pp. 75-84
    • Schneider, K.1    Cammack, R.2    Schlegel, H.G.3
  • 36
    • 0022654732 scopus 로고
    • No correlation exists between the conjugative transfer of the autotrophic character and that of plasmids in Nocardia opaca strains
    • Sensfuss, C., Reh, M. & Schlegel, H. G. (1986). No correlation exists between the conjugative transfer of the autotrophic character and that of plasmids in Nocardia opaca strains. J Gen Microbiol 132, 997-1007.
    • (1986) J Gen Microbiol , vol.132 , pp. 997-1007
    • Sensfuss, C.1    Reh, M.2    Schlegel, H.G.3
  • 37
    • 0026778390 scopus 로고
    • Reconstruction of a Streptomyces linear replicon from separately cloned fragments : Existence of a cryptic origin of circular replication within the linear plasmid
    • Shiffman, D. & Cohen, S. N. (1992). Reconstruction of a Streptomyces linear replicon from separately cloned fragments : existence of a cryptic origin of circular replication within the linear plasmid. Proc Natl Acad Sci USA 89, 6129-6133.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 6129-6133
    • Shiffman, D.1    Cohen, S.N.2
  • 38
    • 0024596736 scopus 로고
    • Selective inactivation of the exonuclease activity of bacteriophage T7 DNA polymerase by in vitro mutagenesis
    • Tabor, S. & Richardson, C. C. (1989). Selective inactivation of the exonuclease activity of bacteriophage T7 DNA polymerase by in vitro mutagenesis. J Biol Chem 264, 6447-6458.
    • (1989) J Biol Chem , vol.264 , pp. 6447-6458
    • Tabor, S.1    Richardson, C.C.2
  • 39
    • 0000760320 scopus 로고
    • Corynebacterium fascians (Tilford 1936) Dowson 1942, the causal agent of leafy gall on lily crops in Belgium
    • Vantomme, R., Elia, S., Swings, J. & De Ley, J. (1982). Corynebacterium fascians (Tilford 1936) Dowson 1942, the causal agent of leafy gall on lily crops in Belgium. Parasitica 38, 183-192.
    • (1982) Parasitica , vol.38 , pp. 183-192
    • Vantomme, R.1    Elia, S.2    Swings, J.3    De Ley, J.4
  • 40
    • 0023634094 scopus 로고
    • Production of single-stranded plasmid DNA
    • Vieira, J. & Messing, J. (1987). Production of single-stranded plasmid DNA. Methods Enzymol 153, 3-11.
    • (1987) Methods Enzymol , vol.153 , pp. 3-11
    • Vieira, J.1    Messing, J.2
  • 41
    • 0030889639 scopus 로고    scopus 로고
    • Artificial circularization of the chromosome with concomitant deletion of its terminal inverted repeats enhances genetic instability and genome rearrangement in Streptomyces lividans
    • Volff, J.-N., Viell, P. & Altenbuchner, J. (1997). Artificial circularization of the chromosome with concomitant deletion of its terminal inverted repeats enhances genetic instability and genome rearrangement in Streptomyces lividans. Mol Gen Genet 253, 753-760.
    • (1997) Mol Gen Genet , vol.253 , pp. 753-760
    • Volff, J.-N.1    Viell, P.2    Altenbuchner, J.3
  • 42
    • 17744404749 scopus 로고
    • Generation of lambda phage concatemers for use as pulsed field electrophoresis size markers
    • Waterbury, P. G. & Lane, M. J. (1987). Generation of lambda phage concatemers for use as pulsed field electrophoresis size markers. Nucleic Acids Res 15, 3930.
    • (1987) Nucleic Acids Res , vol.15 , pp. 3930
    • Waterbury, P.G.1    Lane, M.J.2
  • 43
    • 0027392412 scopus 로고
    • Complete nucleotide sequence of a linear plasmid from Streptomyces clavuligerus and characterization of its RNA transcript
    • Wu, X. & Roy, K. L. (1993). Complete nucleotide sequence of a linear plasmid from Streptomyces clavuligerus and characterization of its RNA transcript. J Bacteriol 175, 37-52.
    • (1993) J Bacteriol , vol.175 , pp. 37-52
    • Wu, X.1    Roy, K.L.2
  • 44
    • 0019434767 scopus 로고
    • Nucleotide sequences at the termini of φ29 DNA
    • Yoshikawa, H., Friedmann, T. & Ito, J. (1981). Nucleotide sequences at the termini of φ29 DNA. Proc Natl Acad Sci USA 78, 1336-1340.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 1336-1340
    • Yoshikawa, H.1    Friedmann, T.2    Ito, J.3
  • 45
    • 0024477429 scopus 로고
    • 2-terminal amino acid sequences of the four non-identical subunits of the NAD-linked hydrogenases from Nocardia opaca 1b and Alcaligenes eutrophus H16
    • 2-terminal amino acid sequences of the four non-identical subunits of the NAD-linked hydrogenases from Nocardia opaca 1b and Alcaligenes eutrophus H16. Eur J Biochem 181, 175-180.
    • (1989) Eur J Biochem , vol.181 , pp. 175-180
    • Zaborosch, C.1    Schneider, K.2    Schlegel, H.G.3    Kratzin, H.4
  • 46
    • 0026772552 scopus 로고
    • Characterization of an autonomously replicating region from the Streptomyces lividans chromosome
    • Zakrzewska-Czerwinska, J. & Schrempf, H. (1992). Characterization of an autonomously replicating region from the Streptomyces lividans chromosome. J Bacteriol 174, 2688-2693.
    • (1992) J Bacteriol , vol.174 , pp. 2688-2693
    • Zakrzewska-Czerwinska, J.1    Schrempf, H.2


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