메뉴 건너뛰기




Volumn 6, Issue 1, 2010, Pages

Automatic assignment of EC numbers

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CLASSIFICATION (OF INFORMATION); ENZYMES; TERMINOLOGY;

EID: 76749146941     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000661     Document Type: Article
Times cited : (24)

References (18)
  • 1
    • 4644326931 scopus 로고    scopus 로고
    • Genomic analysis of regulatory network dynamics reveals large topological changes
    • Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, et al. (2004) Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431: 308-312.
    • (2004) Nature , vol.431 , pp. 308-312
    • Luscombe, N.M.1    Babu, M.M.2    Yu, H.3    Snyder, M.4    Teichmann, S.A.5
  • 2
    • 0034625143 scopus 로고    scopus 로고
    • The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics,and capabilities
    • Edwards JS, Palsson BO (2000) The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics,and capabilities. Proc Natl Acad Sci U S A 97: 5528-5533.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 5528-5533
    • Edwards, J.S.1    Palsson, B.O.2
  • 5
    • 0036081122 scopus 로고    scopus 로고
    • LIGAND: Database of chemical compounds and reactions in biological pathways
    • Goto S, Okuno Y, Hattori M, Nishioka T, Kanehisa M (2002) LIGAND: database of chemical compounds and reactions in biological pathways. Nucleic Acids Res 30: 402-404.
    • (2002) Nucleic Acids Res , vol.30 , pp. 402-404
    • Goto, S.1    Okuno, Y.2    Hattori, M.3    Nishioka, T.4    Kanehisa, M.5
  • 6
    • 38549117301 scopus 로고    scopus 로고
    • The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
    • Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, et al. (2007) The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res 36: D623-D631.
    • (2007) Nucleic Acids Res , vol.36
    • Caspi, R.1    Foerster, H.2    Fulcher, C.A.3    Kaipa, P.4    Krummenacker, M.5
  • 8
    • 34548860112 scopus 로고    scopus 로고
    • The Edinburgh human metabolic network reconstruction and its functional analysis
    • Ma H, Sorokin A, Mazein A, Selkov A, Selkov E, et al. (2007) The Edinburgh human metabolic network reconstruction and its functional analysis. Mol Syst Biol 3: 135.
    • (2007) Mol Syst Biol , vol.3 , pp. 135
    • Ma, H.1    Sorokin, A.2    Mazein, A.3    Selkov, A.4    Selkov, E.5
  • 10
    • 33644873213 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt): An expanding universe of protein information
    • Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, et al. (2006) The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res 34: D187-D191.
    • (2006) Nucleic Acids Res , vol.34
    • Wu, C.H.1    Apweiler, R.2    Bairoch, A.3    Natale, D.A.4    Barker, W.C.5
  • 11
    • 11444249446 scopus 로고    scopus 로고
    • Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions
    • Kotera M, Okuno Y, Hattori M, Goto S, Kanehisa M (2004) Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions. J Am Chem Soc 126: 16487-98.
    • (2004) J Am Chem Soc , vol.126 , pp. 16487-16498
    • Kotera, M.1    Okuno, Y.2    Hattori, M.3    Goto, S.4    Kanehisa, M.5
  • 12
    • 0141843591 scopus 로고    scopus 로고
    • Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways
    • Hattori M, Okuno Y, Goto S, Kanehisa M (2003) Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways. Journal of the American Chemical Society 125: 11853-11865.
    • (2003) Journal of the American Chemical Society , vol.125 , pp. 11853-11865
    • Hattori, M.1    Okuno, Y.2    Goto, S.3    Kanehisa, M.4
  • 14
    • 47349099128 scopus 로고    scopus 로고
    • Automatic Determination of Reaction Mappings and Reaction Center Information. 2. Validation on a Biochemical Reaction Database
    • Apostolakis J, Sacher O, Körner R, Gasteiger J (2008) Automatic Determination of Reaction Mappings and Reaction Center Information. 2. Validation on a Biochemical Reaction Database. Journal of Chemical Information and Modeling 48: 1190-1198.
    • (2008) Journal of Chemical Information and Modeling , vol.48 , pp. 1190-1198
    • Apostolakis, J.1    Sacher, O.2    Körner, R.3    Gasteiger, J.4
  • 15
    • 52949085526 scopus 로고    scopus 로고
    • Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps
    • Latino D, Zhang Q, Sousa J (2008) Genome-scale classification of metabolic reactions and assignment of EC numbers with self-organizing maps. Bioinformatics 24: 2236-2244.
    • (2008) Bioinformatics , vol.24 , pp. 2236-2244
    • Latino, D.1    Zhang, Q.2    Sousa, J.3
  • 16
    • 0038434059 scopus 로고    scopus 로고
    • Metabolites: A helping hand for pathway evolution?
    • Schmidt S, Bork P, Dandekar T (2003) Metabolites: a helping hand for pathway evolution? Trends Biochem Sci 28: 336-41.
    • (2003) Trends Biochem Sci , vol.28 , pp. 336-341
    • Schmidt, S.1    Bork, P.2    Dandekar, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.