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Volumn 9, Issue 2, 2010, Pages 279-291

Molecular evolutionary analysis of cancer cell lines

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MESSENGER RNA; NUCLEOTIDE;

EID: 76749115787     PISSN: 15357163     EISSN: None     Source Type: Journal    
DOI: 10.1158/1535-7163.MCT-09-0508     Document Type: Article
Times cited : (7)

References (49)
  • 1
    • 33749993417 scopus 로고    scopus 로고
    • The consensus coding sequences of human breast and colorectal cancers
    • Sjoblom T, Jones S, Wood LD, et al. The consensus coding sequences of human breast and colorectal cancers. Science 2006; 314:268-74.
    • (2006) Science , vol.314 , pp. 268-274
    • Sjoblom, T.1    Jones, S.2    Wood, L.D.3
  • 2
    • 52149123619 scopus 로고    scopus 로고
    • Core signaling pathways in human pancreatic cancers revealed by global genomic analyses
    • Jones S, Zhang X, Parsons DW, et al. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science 2008;321:1801-6.
    • (2008) Science , vol.321 , pp. 1801-1806
    • Jones, S.1    Zhang, X.2    Parsons, D.W.3
  • 3
    • 52949127312 scopus 로고    scopus 로고
    • An integrated genomic analysis of human glioblastoma multiforme
    • Parsons DW, Jones S, Zhang X, et al. An integrated genomic analysis of human glioblastoma multiforme. Science 2008;321:1807-12.
    • (2008) Science , vol.321 , pp. 1807-1812
    • Parsons, D.W.1    Jones, S.2    Zhang, X.3
  • 4
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • The Cancer Genome Atlas Research Network
    • The Cancer Genome Atlas Research Network. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 2008;455:1061-8.
    • (2008) Nature , vol.455 , pp. 1061-1068
  • 5
    • 36549075214 scopus 로고    scopus 로고
    • Systematic analyses of the cancer genome: Lessons learned from sequencing most of the annotated human protein-coding genes
    • Sjoblom T. Systematic analyses of the cancer genome: lessons learned from sequencing most of the annotated human protein-coding genes. Curr Opin Oncol 2008;20:66-71.
    • (2008) Curr Opin Oncol , vol.20 , pp. 66-71
    • Sjoblom, T.1
  • 6
    • 37049003993 scopus 로고    scopus 로고
    • Genetic alterations in the tyrosine kinase transcriptome of human cancer cell lines
    • Ruhe JE, Streit S, Hart S, et al. Genetic alterations in the tyrosine kinase transcriptome of human cancer cell lines. Cancer Res 2007; 67:11368-76.
    • (2007) Cancer Res , vol.67 , pp. 11368-11376
    • Ruhe, J.E.1    Streit, S.2    Hart, S.3
  • 7
    • 33847237571 scopus 로고    scopus 로고
    • Darwinian medicine: A case for cancer
    • Greaves M. Darwinian medicine: a case for cancer. Nat Rev Cancer 2007;7:213-21.
    • (2007) Nat Rev Cancer , vol.7 , pp. 213-221
    • Greaves, M.1
  • 8
    • 10744226821 scopus 로고    scopus 로고
    • Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays
    • Nishizuka S, Charboneau L, Young L, et al. Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays. Proc Natl Acad Sci U S A 2003;100:14229-34.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 14229-14234
    • Nishizuka, S.1    Charboneau, L.2    Young, L.3
  • 9
    • 34147115178 scopus 로고    scopus 로고
    • Transcript and protein expression profiles of the NCI-60 cancer cell panel: An integromic microarray study
    • Shankavaram UT, Reinhold WC, Nishizuka S, et al. Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study. Mol Cancer Ther 2007;6:820-32.
    • (2007) Mol Cancer Ther , vol.6 , pp. 820-832
    • Shankavaram, U.T.1    Reinhold, W.C.2    Nishizuka, S.3
  • 10
    • 66449108540 scopus 로고    scopus 로고
    • DNA fingerprinting of the NCI-60 cell line panel
    • Lorenzi PL, Reinhold WC, Varma S, et al. DNA fingerprinting of the NCI-60 cell line panel. Mol Cancer Ther 2009;8:713-24.
    • (2009) Mol Cancer Ther , vol.8 , pp. 713-724
    • Lorenzi, P.L.1    Reinhold, W.C.2    Varma, S.3
  • 11
    • 61549108338 scopus 로고    scopus 로고
    • EGFR T790M mutation: A double role in lung cancer cell survival
    • Suda K, Onozato R, Yatabe Y, Mitsudomi T. EGFR T790M mutation: a double role in lung cancer cell survival? J Thorac Oncol 2009;4:1-4.
    • (2009) J Thorac Oncol , vol.4 , pp. 1-4
    • Suda, K.1    Onozato, R.2    Yatabe, Y.3    Mitsudomi, T.4
  • 13
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 2000;290:972-7.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 15
    • 3843084078 scopus 로고    scopus 로고
    • The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website
    • Bamford S, Dawson E, Forbes S, et al. The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website. Br J Cancer 2004;91:355-8.
    • (2004) Br J Cancer , vol.91 , pp. 355-358
    • Bamford, S.1    Dawson, E.2    Forbes, S.3
  • 17
    • 0031892789 scopus 로고    scopus 로고
    • A genetic algorithmfor maximum-likelihood phylogeny inference using nucleotide sequence data
    • Lewis PO. A genetic algorithmfor maximum-likelihood phylogeny inference using nucleotide sequence data. Mol Biol Evol 1998;15:277-83.
    • (1998) Mol Biol Evol , vol.15 , pp. 277-283
    • Lewis, P.O.1
  • 18
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001;17:754-5.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 19
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003;19:1572-4.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 20
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page RD. TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 1996;12:357-8.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.1
  • 23
    • 20444468926 scopus 로고    scopus 로고
    • Genome-based identification of diagnostic molecular markers for human lung carcinomas by PLS-DA
    • Musumarra G, Barresi V, Condorelli DF, Fortuna CG, Scire S. Genome-based identification of diagnostic molecular markers for human lung carcinomas by PLS-DA. Comput Biol Chem 2005;29: 183-95.
    • (2005) Comput Biol Chem , vol.29 , pp. 183-195
    • Musumarra, G.1    Barresi, V.2    Condorelli, D.F.3    Fortuna, C.G.4    Scire, S.5
  • 24
    • 0037245343 scopus 로고    scopus 로고
    • Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
    • Simon R, Radmacher MD, Dobbin K, McShane LM. Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J Natl Cancer Inst 2003;95:14-8.
    • (2003) J Natl Cancer Inst , vol.95 , pp. 14-18
    • Simon, R.1    Radmacher, M.D.2    Dobbin, K.3    McShane, L.M.4
  • 25
    • 0037298745 scopus 로고    scopus 로고
    • A bioinformatic approach to the identification of candidate genes for the development of new cancer diagnostics
    • Musumarra G, Barresi V, Condorelli DF, Scire S. A bioinformatic approach to the identification of candidate genes for the development of new cancer diagnostics. Biol Chem 2003;384:321-7.
    • (2003) Biol Chem , vol.384 , pp. 321-327
    • Musumarra, G.1    Barresi, V.2    Condorelli, D.F.3    Scire, S.4
  • 26
    • 0038620211 scopus 로고    scopus 로고
    • Prediction of clinical outcome with microarray data: A partial least squares discriminant analysis (PLS-DA) approach
    • Perez-Enciso M, Tenenhaus M. Prediction of clinical outcome with microarray data: a partial least squares discriminant analysis (PLS-DA) approach. Hum Genet 2003;112:581-92.
    • (2003) Hum Genet , vol.112 , pp. 581-592
    • Perez-Enciso, M.1    Tenenhaus, M.2
  • 27
    • 27344436232 scopus 로고    scopus 로고
    • Predictors of primary breast cancers responsiveness to preoperative epirubicin/ cyclophosphamide-based chemotherapy: Translation of microarray data into clinically useful predictive signatures
    • Modlich O, Prisack HB, Munnes M, Audretsch W, Bojar H. Predictors of primary breast cancers responsiveness to preoperative epirubicin/ cyclophosphamide-based chemotherapy: translation of microarray data into clinically useful predictive signatures. J Transl Med 2005;3:32.
    • (2005) J Transl Med , vol.3 , pp. 32
    • Modlich, O.1    Prisack, H.B.2    Munnes, M.3    Audretsch, W.4    Bojar, H.5
  • 28
    • 9244261068 scopus 로고    scopus 로고
    • Evaluating methods for classifying expression data
    • Man MZ, Dyson G, Johnson K, Liao B. Evaluating methods for classifying expression data. J Biopharm Stat 2004;14:1065-84.
    • (2004) J Biopharm Stat , vol.14 , pp. 1065-1084
    • Man, M.Z.1    Dyson, G.2    Johnson, K.3    Liao, B.4
  • 29
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B 1995;57:289-300.
    • (1995) J R Stat Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 31
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Yang Z, Nielsen R. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol 2002;19:908-17.
    • (2002) Mol Biol Evol , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 32
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 2005;22:2472-9.
    • (2005) Mol Biol Evol , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 33
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 1997;13:555-6.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 34
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007;24:1586-91.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 35
    • 34547793042 scopus 로고    scopus 로고
    • Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
    • Anisimova M, Yang Z. Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites. Mol Biol Evol 2007;24:1219-28.
    • (2007) Mol Biol Evol , vol.24 , pp. 1219-1228
    • Anisimova, M.1    Yang, Z.2
  • 38
    • 0028177080 scopus 로고
    • A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
    • Kuhner MK, Felsenstein J. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol Biol Evol 1994;11:459-68.
    • (1994) Mol Biol Evol , vol.11 , pp. 459-468
    • Kuhner, M.K.1    Felsenstein, J.2
  • 39
    • 36949017486 scopus 로고    scopus 로고
    • Regulation of catalytic activity of S6 kinase 2 during cell cycle
    • Boyer D, Quintanilla R, Lee-Fruman KK. Regulation of catalytic activity of S6 kinase 2 during cell cycle. Mol Cell Biochem 2008;307:59-64.
    • (2008) Mol Cell Biochem , vol.307 , pp. 59-64
    • Boyer, D.1    Quintanilla, R.2    Lee-Fruman, K.K.3
  • 40
    • 33745692998 scopus 로고    scopus 로고
    • Survivin study: An update of what is the next wave?"
    • Li F, Ling X. Survivin study: an update of "what is the next wave?" J Cell Physiol 2006;208:476-86.
    • (2006) J Cell Physiol , vol.208 , pp. 476-486
    • Li, F.1    Ling, X.2
  • 41
  • 42
    • 33947101019 scopus 로고    scopus 로고
    • Patterns of somatic mutation in human cancer genomes
    • Greenman C, Stephens P, Smith R, et al. Patterns of somatic mutation in human cancer genomes. Nature 2007;446:153-8.
    • (2007) Nature , vol.446 , pp. 153-158
    • Greenman, C.1    Stephens, P.2    Smith, R.3
  • 43
    • 33745952966 scopus 로고    scopus 로고
    • Variants in the ATM-BRCA2-CHEK2 axis predispose to chronic lymphocytic leukemia
    • Rudd MF, Sellick GS, Webb EL, Catovsky D, Houlston RS. Variants in the ATM-BRCA2-CHEK2 axis predispose to chronic lymphocytic leukemia. Blood 2006;108:638-44.
    • (2006) Blood , vol.108 , pp. 638-644
    • Rudd, M.F.1    Sellick, G.S.2    Webb, E.L.3    Catovsky, D.4    Houlston, R.S.5
  • 44
    • 7144250518 scopus 로고    scopus 로고
    • Role of a p53 polymorphism in the development of human papillomavirus-associated cancer
    • Storey A, Thomas M, Kalita A, et al. Role of a p53 polymorphism in the development of human papillomavirus-associated cancer. Nature 1998;393:229-34.
    • (1998) Nature , vol.393 , pp. 229-234
    • Storey, A.1    Thomas, M.2    Kalita, A.3
  • 45
    • 12344273381 scopus 로고    scopus 로고
    • Variation in the human TP53 gene affects old age survival and cancer mortality
    • van HD, Mooijaart SP, Beekman M, et al. Variation in the human TP53 gene affects old age survival and cancer mortality. Exp Gerontol 2005;40:11-5.
    • (2005) Exp Gerontol , vol.40 , pp. 11-15
    • van, H.D.1    Mooijaart, S.P.2    Beekman, M.3
  • 47
    • 66149086564 scopus 로고    scopus 로고
    • Reliabilities of identifying positive selection by the branch-site and the site-prediction methods
    • Nozawa M, Suzuki Y, Nei M. Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proc Natl Acad Sci U S A 2009;106:6700-5.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 6700-6705
    • Nozawa, M.1    Suzuki, Y.2    Nei, M.3
  • 48
    • 0027104018 scopus 로고
    • Matrix representation in reconstructing phylogenetic relationships among the eukaryotes
    • Ragan MA. Matrix representation in reconstructing phylogenetic relationships among the eukaryotes. Biosystems 1992;28:47-55.
    • (1992) Biosystems , vol.28 , pp. 47-55
    • Ragan, M.A.1
  • 49
    • 55549092780 scopus 로고    scopus 로고
    • Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes
    • Varley KE, Mitra RD. Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes. Genome Res 2008;18: 1844-50.
    • (2008) Genome Res , vol.18 , pp. 1844-1850
    • Varley, K.E.1    Mitra, R.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.