-
1
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
Sjoblom T, Jones S, Wood LD, et al. The consensus coding sequences of human breast and colorectal cancers. Science 2006; 314:268-74.
-
(2006)
Science
, vol.314
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
-
2
-
-
52149123619
-
Core signaling pathways in human pancreatic cancers revealed by global genomic analyses
-
Jones S, Zhang X, Parsons DW, et al. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science 2008;321:1801-6.
-
(2008)
Science
, vol.321
, pp. 1801-1806
-
-
Jones, S.1
Zhang, X.2
Parsons, D.W.3
-
3
-
-
52949127312
-
An integrated genomic analysis of human glioblastoma multiforme
-
Parsons DW, Jones S, Zhang X, et al. An integrated genomic analysis of human glioblastoma multiforme. Science 2008;321:1807-12.
-
(2008)
Science
, vol.321
, pp. 1807-1812
-
-
Parsons, D.W.1
Jones, S.2
Zhang, X.3
-
4
-
-
54549108740
-
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
-
The Cancer Genome Atlas Research Network
-
The Cancer Genome Atlas Research Network. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 2008;455:1061-8.
-
(2008)
Nature
, vol.455
, pp. 1061-1068
-
-
-
5
-
-
36549075214
-
Systematic analyses of the cancer genome: Lessons learned from sequencing most of the annotated human protein-coding genes
-
Sjoblom T. Systematic analyses of the cancer genome: lessons learned from sequencing most of the annotated human protein-coding genes. Curr Opin Oncol 2008;20:66-71.
-
(2008)
Curr Opin Oncol
, vol.20
, pp. 66-71
-
-
Sjoblom, T.1
-
6
-
-
37049003993
-
Genetic alterations in the tyrosine kinase transcriptome of human cancer cell lines
-
Ruhe JE, Streit S, Hart S, et al. Genetic alterations in the tyrosine kinase transcriptome of human cancer cell lines. Cancer Res 2007; 67:11368-76.
-
(2007)
Cancer Res
, vol.67
, pp. 11368-11376
-
-
Ruhe, J.E.1
Streit, S.2
Hart, S.3
-
7
-
-
33847237571
-
Darwinian medicine: A case for cancer
-
Greaves M. Darwinian medicine: a case for cancer. Nat Rev Cancer 2007;7:213-21.
-
(2007)
Nat Rev Cancer
, vol.7
, pp. 213-221
-
-
Greaves, M.1
-
8
-
-
10744226821
-
Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays
-
Nishizuka S, Charboneau L, Young L, et al. Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays. Proc Natl Acad Sci U S A 2003;100:14229-34.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 14229-14234
-
-
Nishizuka, S.1
Charboneau, L.2
Young, L.3
-
9
-
-
34147115178
-
Transcript and protein expression profiles of the NCI-60 cancer cell panel: An integromic microarray study
-
Shankavaram UT, Reinhold WC, Nishizuka S, et al. Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study. Mol Cancer Ther 2007;6:820-32.
-
(2007)
Mol Cancer Ther
, vol.6
, pp. 820-832
-
-
Shankavaram, U.T.1
Reinhold, W.C.2
Nishizuka, S.3
-
13
-
-
0034602344
-
A kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 2000;290:972-7.
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Siefert, I.3
Doolittle, W.F.4
-
14
-
-
0034942865
-
Universal trees based on large combined protein sequence data sets
-
Brown JR, Douady CJ, Italia MJ, Marshall WE, Stanhope MJ. Universal trees based on large combined protein sequence data sets. Nat Genet 2001;28:281-5.
-
(2001)
Nat Genet
, vol.28
, pp. 281-285
-
-
Brown, J.R.1
Douady, C.J.2
Italia, M.J.3
Marshall, W.E.4
Stanhope, M.J.5
-
15
-
-
3843084078
-
The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website
-
Bamford S, Dawson E, Forbes S, et al. The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website. Br J Cancer 2004;91:355-8.
-
(2004)
Br J Cancer
, vol.91
, pp. 355-358
-
-
Bamford, S.1
Dawson, E.2
Forbes, S.3
-
17
-
-
0031892789
-
A genetic algorithmfor maximum-likelihood phylogeny inference using nucleotide sequence data
-
Lewis PO. A genetic algorithmfor maximum-likelihood phylogeny inference using nucleotide sequence data. Mol Biol Evol 1998;15:277-83.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 277-283
-
-
Lewis, P.O.1
-
18
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001;17:754-5.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
19
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003;19:1572-4.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
20
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page RD. TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 1996;12:357-8.
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 357-358
-
-
Page, R.D.1
-
21
-
-
38649092410
-
Dendroscope: An interactive viewer for large phylogenetic trees
-
Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R. Dendroscope: an interactive viewer for large phylogenetic trees. BMC Bioinformatics 2007;8:460.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 460
-
-
Huson, D.H.1
Richter, D.C.2
Rausch, C.3
Dezulian, T.4
Franz, M.5
Rupp, R.6
-
22
-
-
33846935736
-
The Cancer Biomedical Informatics Grid (caBIG). Conf
-
Fenstermacher D, Street C, McSherry T, Nayak V, Overby C, Feldman M. The Cancer Biomedical Informatics Grid (caBIG). Conf Proc IEEE Eng Med Biol Soc 2005;1:743-6.
-
(2005)
Proc IEEE Eng Med Biol Soc
, vol.1
, pp. 743-746
-
-
Fenstermacher, D.1
Street, C.2
McSherry, T.3
Nayak, V.4
Overby, C.5
Feldman, M.6
-
23
-
-
20444468926
-
Genome-based identification of diagnostic molecular markers for human lung carcinomas by PLS-DA
-
Musumarra G, Barresi V, Condorelli DF, Fortuna CG, Scire S. Genome-based identification of diagnostic molecular markers for human lung carcinomas by PLS-DA. Comput Biol Chem 2005;29: 183-95.
-
(2005)
Comput Biol Chem
, vol.29
, pp. 183-195
-
-
Musumarra, G.1
Barresi, V.2
Condorelli, D.F.3
Fortuna, C.G.4
Scire, S.5
-
24
-
-
0037245343
-
Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
-
Simon R, Radmacher MD, Dobbin K, McShane LM. Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J Natl Cancer Inst 2003;95:14-8.
-
(2003)
J Natl Cancer Inst
, vol.95
, pp. 14-18
-
-
Simon, R.1
Radmacher, M.D.2
Dobbin, K.3
McShane, L.M.4
-
25
-
-
0037298745
-
A bioinformatic approach to the identification of candidate genes for the development of new cancer diagnostics
-
Musumarra G, Barresi V, Condorelli DF, Scire S. A bioinformatic approach to the identification of candidate genes for the development of new cancer diagnostics. Biol Chem 2003;384:321-7.
-
(2003)
Biol Chem
, vol.384
, pp. 321-327
-
-
Musumarra, G.1
Barresi, V.2
Condorelli, D.F.3
Scire, S.4
-
26
-
-
0038620211
-
Prediction of clinical outcome with microarray data: A partial least squares discriminant analysis (PLS-DA) approach
-
Perez-Enciso M, Tenenhaus M. Prediction of clinical outcome with microarray data: a partial least squares discriminant analysis (PLS-DA) approach. Hum Genet 2003;112:581-92.
-
(2003)
Hum Genet
, vol.112
, pp. 581-592
-
-
Perez-Enciso, M.1
Tenenhaus, M.2
-
27
-
-
27344436232
-
Predictors of primary breast cancers responsiveness to preoperative epirubicin/ cyclophosphamide-based chemotherapy: Translation of microarray data into clinically useful predictive signatures
-
Modlich O, Prisack HB, Munnes M, Audretsch W, Bojar H. Predictors of primary breast cancers responsiveness to preoperative epirubicin/ cyclophosphamide-based chemotherapy: translation of microarray data into clinically useful predictive signatures. J Transl Med 2005;3:32.
-
(2005)
J Transl Med
, vol.3
, pp. 32
-
-
Modlich, O.1
Prisack, H.B.2
Munnes, M.3
Audretsch, W.4
Bojar, H.5
-
29
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B 1995;57:289-300.
-
(1995)
J R Stat Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
30
-
-
34447628843
-
Pathway mapping tools for analysis of high content data
-
Ekins S, Nikolsky Y, Bugrim A, Kirillov E, Nikolskaya T. Pathway mapping tools for analysis of high content data. Methods Mol Biol 2007;356:319-50.
-
(2007)
Methods Mol Biol
, vol.356
, pp. 319-350
-
-
Ekins, S.1
Nikolsky, Y.2
Bugrim, A.3
Kirillov, E.4
Nikolskaya, T.5
-
31
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
Yang Z, Nielsen R. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol 2002;19:908-17.
-
(2002)
Mol Biol Evol
, vol.19
, pp. 908-917
-
-
Yang, Z.1
Nielsen, R.2
-
32
-
-
27844439855
-
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
-
Zhang J, Nielsen R, Yang Z. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 2005;22:2472-9.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2472-2479
-
-
Zhang, J.1
Nielsen, R.2
Yang, Z.3
-
33
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 1997;13:555-6.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
34
-
-
34547803197
-
PAML 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007;24:1586-91.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
35
-
-
34547793042
-
Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites
-
Anisimova M, Yang Z. Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites. Mol Biol Evol 2007;24:1219-28.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1219-1228
-
-
Anisimova, M.1
Yang, Z.2
-
37
-
-
33845311843
-
Human cancers express a mutator phenotype
-
Bielas JH, Loeb KR, Rubin BP, True LD, Loeb LA. Human cancers express a mutator phenotype. Proc Natl Acad Sci U S A 2006;103: 18238-42.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 18238-18242
-
-
Bielas, J.H.1
Loeb, K.R.2
Rubin, B.P.3
True, L.D.4
Loeb, L.A.5
-
38
-
-
0028177080
-
A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
-
Kuhner MK, Felsenstein J. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol Biol Evol 1994;11:459-68.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 459-468
-
-
Kuhner, M.K.1
Felsenstein, J.2
-
39
-
-
36949017486
-
Regulation of catalytic activity of S6 kinase 2 during cell cycle
-
Boyer D, Quintanilla R, Lee-Fruman KK. Regulation of catalytic activity of S6 kinase 2 during cell cycle. Mol Cell Biochem 2008;307:59-64.
-
(2008)
Mol Cell Biochem
, vol.307
, pp. 59-64
-
-
Boyer, D.1
Quintanilla, R.2
Lee-Fruman, K.K.3
-
40
-
-
33745692998
-
Survivin study: An update of what is the next wave?"
-
Li F, Ling X. Survivin study: an update of "what is the next wave?" J Cell Physiol 2006;208:476-86.
-
(2006)
J Cell Physiol
, vol.208
, pp. 476-486
-
-
Li, F.1
Ling, X.2
-
42
-
-
33947101019
-
Patterns of somatic mutation in human cancer genomes
-
Greenman C, Stephens P, Smith R, et al. Patterns of somatic mutation in human cancer genomes. Nature 2007;446:153-8.
-
(2007)
Nature
, vol.446
, pp. 153-158
-
-
Greenman, C.1
Stephens, P.2
Smith, R.3
-
43
-
-
33745952966
-
Variants in the ATM-BRCA2-CHEK2 axis predispose to chronic lymphocytic leukemia
-
Rudd MF, Sellick GS, Webb EL, Catovsky D, Houlston RS. Variants in the ATM-BRCA2-CHEK2 axis predispose to chronic lymphocytic leukemia. Blood 2006;108:638-44.
-
(2006)
Blood
, vol.108
, pp. 638-644
-
-
Rudd, M.F.1
Sellick, G.S.2
Webb, E.L.3
Catovsky, D.4
Houlston, R.S.5
-
44
-
-
7144250518
-
Role of a p53 polymorphism in the development of human papillomavirus-associated cancer
-
Storey A, Thomas M, Kalita A, et al. Role of a p53 polymorphism in the development of human papillomavirus-associated cancer. Nature 1998;393:229-34.
-
(1998)
Nature
, vol.393
, pp. 229-234
-
-
Storey, A.1
Thomas, M.2
Kalita, A.3
-
45
-
-
12344273381
-
Variation in the human TP53 gene affects old age survival and cancer mortality
-
van HD, Mooijaart SP, Beekman M, et al. Variation in the human TP53 gene affects old age survival and cancer mortality. Exp Gerontol 2005;40:11-5.
-
(2005)
Exp Gerontol
, vol.40
, pp. 11-15
-
-
van, H.D.1
Mooijaart, S.P.2
Beekman, M.3
-
47
-
-
66149086564
-
Reliabilities of identifying positive selection by the branch-site and the site-prediction methods
-
Nozawa M, Suzuki Y, Nei M. Reliabilities of identifying positive selection by the branch-site and the site-prediction methods. Proc Natl Acad Sci U S A 2009;106:6700-5.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 6700-6705
-
-
Nozawa, M.1
Suzuki, Y.2
Nei, M.3
-
48
-
-
0027104018
-
Matrix representation in reconstructing phylogenetic relationships among the eukaryotes
-
Ragan MA. Matrix representation in reconstructing phylogenetic relationships among the eukaryotes. Biosystems 1992;28:47-55.
-
(1992)
Biosystems
, vol.28
, pp. 47-55
-
-
Ragan, M.A.1
-
49
-
-
55549092780
-
Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes
-
Varley KE, Mitra RD. Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes. Genome Res 2008;18: 1844-50.
-
(2008)
Genome Res
, vol.18
, pp. 1844-1850
-
-
Varley, K.E.1
Mitra, R.D.2
|