메뉴 건너뛰기




Volumn 5, Issue , 2009, Pages 71-74

Predicting membrane protein types with dimensionality reduction and kernel method

Author keywords

Dimensionality reduction method; Kernel method; KLDA; LDA; Membrane protein

Indexed keywords

DIMENSIONALITY REDUCTION; DIMENSIONALITY REDUCTION METHOD; DIPEPTIDE COMPOSITION; DISCRETE MODELS; HIGH-DIMENSIONAL; K-NEAREST NEIGHBORS; KERNEL METHODS; LINEAR DIMENSIONALITY REDUCTION; LINEAR DISCRIMINANT ANALYSIS; MEMBRANE PROTEINS; NONLINEAR DIMENSIONALITY REDUCTION; PROTEIN SEQUENCES; REPRESENTATION METHOD;

EID: 76549134771     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FSKD.2009.721     Document Type: Conference Paper
Times cited : (2)

References (17)
  • 2
    • 0032910566 scopus 로고    scopus 로고
    • Prediction of membrane protein types and subcellular locations
    • K.C. Chou and D. W. Elrod. Prediction of membrane protein types and subcellular locations. Proteins: Struct. Funct. Genet. 34: 137-153, 1999.
    • (1999) Proteins: Struct. Funct. Genet , vol.34 , pp. 137-153
    • Chou, K.C.1    Elrod, D.W.2
  • 3
    • 0003128793 scopus 로고
    • Prediction of protein structural classes from amino acid composition
    • Fasman, G.D, Ed, Plenum Press, New York
    • P.Y. Chou, Prediction of protein structural classes from amino acid composition. In: Fasman, G.D. (Ed.), Prediction of Protein Structure and the Principles of Protein Conformation. Plenum Press, New York, (1989) 549-586.
    • (1989) Prediction of Protein Structure and the Principles of Protein Conformation , pp. 549-586
    • Chou, P.Y.1
  • 4
    • 48949107706 scopus 로고    scopus 로고
    • A .Garg and GP. Raghava. A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search. In Silico Biol. 8(2):129-140, 2008.
    • A .Garg and GP. Raghava. A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search. In Silico Biol. 8(2):129-140, 2008.
  • 5
    • 34249807035 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protein structural class: Approached by incorporating 400 dipeptide components
    • H. Lin and Q. Z. Li. Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components. J Comput Chem. 28(9):1463-1466, 2007.
    • (2007) J Comput Chem , vol.28 , Issue.9 , pp. 1463-1466
    • Lin, H.1    Li, Q.Z.2
  • 6
    • 0000764772 scopus 로고
    • The use of multiple measures in taxonomic problems
    • R. A. Fisher, The use of multiple measures in taxonomic problems. Ann., Eugenics. 7(1936) 179-188.
    • (1936) Ann., Eugenics , vol.7 , pp. 179-188
    • Fisher, R.A.1
  • 9
    • 0033337021 scopus 로고    scopus 로고
    • S Mika, G Ratsch, J Weston, B Scholkopf, KR Mullers. Neural Networks for Signal Processing IX, 1999. Proceedings of the 1999 IEEE Signal Processing Society Workshop (1999), pp. 41-48
    • S Mika, G Ratsch, J Weston, B Scholkopf, KR Mullers. Neural Networks for Signal Processing IX, 1999. Proceedings of the 1999 IEEE Signal Processing Society Workshop (1999), pp. 41-48
  • 10
    • 0029307876 scopus 로고
    • A k-Nearest Neighbor Classification Rule Based on Dempster-ShaferTheory
    • Denoeux, T., A k-Nearest Neighbor Classification Rule Based on Dempster-ShaferTheory. IEEE Transactions on Systems, Man, and Cybernetics, 1995. 25(5): p. 804-813.
    • (1995) IEEE Transactions on Systems, Man, and Cybernetics , vol.25 , Issue.5 , pp. 804-813
    • Denoeux, T.1
  • 12
    • 15244350269 scopus 로고    scopus 로고
    • Using complexity measure factor to predict protein subcellular location
    • Xiao, X., S. Shao, Y. Ding, Z. Huang, Y. Huang, and K.C. Chou, Using complexity measure factor to predict protein subcellular location. Amino Acids, 2005. 28(1): p. 57-61.
    • (2005) Amino Acids , vol.28 , Issue.1 , pp. 57-61
    • Xiao, X.1    Shao, S.2    Ding, Y.3    Huang, Z.4    Huang, Y.5    Chou, K.C.6
  • 13
    • 33646393287 scopus 로고    scopus 로고
    • Predicting protein structural class with AdaBoost Learner
    • Niu, B., Y.D. Cai, W.C. Lu, G.Z. Li, and K.C. Chou, Predicting protein structural class with AdaBoost Learner. Protein and Peptide Letters, 2006. 13(5): p. 489-492.
    • (2006) Protein and Peptide Letters , vol.13 , Issue.5 , pp. 489-492
    • Niu, B.1    Cai, Y.D.2    Lu, W.C.3    Li, G.Z.4    Chou, K.C.5
  • 14
    • 34548301416 scopus 로고    scopus 로고
    • Prediction of linear B-cell epitopes using amino acid pair antigenicity scale
    • Chen, J., H. Liu, J. Yang, and K.C. Chou, Prediction of linear B-cell epitopes using amino acid pair antigenicity scale. Amino Acids, 2007. 33(3): p. 423-428.
    • (2007) Amino Acids , vol.33 , Issue.3 , pp. 423-428
    • Chen, J.1    Liu, H.2    Yang, J.3    Chou, K.C.4
  • 15
    • 34249051980 scopus 로고    scopus 로고
    • Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments
    • Liu, D.Q., H. Liu, H.B. Shen, J. Yang, and K.C. Chou, Predicting secretory protein signal sequence cleavage sites by fusing the marks of global alignments. Amino Acids, 2007. 32(4): p. 493-6.
    • (2007) Amino Acids , vol.32 , Issue.4 , pp. 493-496
    • Liu, D.Q.1    Liu, H.2    Shen, H.B.3    Yang, J.4    Chou, K.C.5
  • 16
    • 21244494465 scopus 로고    scopus 로고
    • Using string kernel to predict signal peptide cleavage site based on subsite coupling model
    • Wang, M., J. Yang, and K.C. Chou, Using string kernel to predict signal peptide cleavage site based on subsite coupling model. Amino Acids, 2005. 28(4): p. 395-402.
    • (2005) Amino Acids , vol.28 , Issue.4 , pp. 395-402
    • Wang, M.1    Yang, J.2    Chou, K.C.3
  • 17
    • 0032910566 scopus 로고    scopus 로고
    • Prediction of membrane protein types and subcellular locations
    • K.C. Chou and D.W. Elrod. Prediction of membrane protein types and subcellular locations. PROTEINS: Struct. Funct. Genet. 34, 137-153. 1999.
    • (1999) PROTEINS: Struct. Funct. Genet , vol.34 , pp. 137-153
    • Chou, K.C.1    Elrod, D.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.