-
1
-
-
0037444091
-
a new system for recognizing protein-coding genes in bacterial and archaeal genomes
-
ZURVE
-
Guo FB , Ou HY and Zhang CT, ZURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes. Nucleic Acids Res., 31: 1780-1789, 2003.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1780-1789
-
-
Guo, F.B.1
Ou, H.Y.2
Zhang, C.T.3
-
2
-
-
30844454225
-
ZCURVE V, a new selftraining system for recognizing protein-coding genes in viral and phage genomes
-
Guo FB and Zhang CT: ZCURVE V, a new selftraining system for recognizing protein-coding genes in viral and phage genomes. BMC Bioinformatics, 7:9(1-11), 2006.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1-11
, pp. 9
-
-
Guo, F.B.1
Zhang, C.T.2
-
3
-
-
0035875343
-
-
Besemer J, Lomsadze A, Borodovsky M, GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res., 29:2607-2618, 2001.
-
Besemer J, Lomsadze A, Borodovsky M, GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res., 29:2607-2618, 2001.
-
-
-
-
4
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL, Improved microbial gene identification with GLIMMER. Nucleic Acids Res., 27:4636-4641, 1999.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
5
-
-
0032900737
-
coding region identification tool invoking comparative analysis
-
CRITICA
-
Badger JH, Olsen GJ, CRITICA: coding region identification tool invoking comparative analysis. Mol. Biol. Evol., 16:512-24, 1999.
-
(1999)
Mol. Biol. Evol
, vol.16
, pp. 512-524
-
-
Badger, J.H.1
Olsen, G.J.2
-
6
-
-
0032526322
-
Combining diverse evidence for gene recognition in completely sequenced bacterial genomes
-
Frishman D, Mironov A, Mewes HW, Gelfand M, Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. Nucleic Acids Res., 26:2941-2947, 1998.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2941-2947
-
-
Frishman, D.1
Mironov, A.2
Mewes, H.W.3
Gelfand, M.4
-
7
-
-
0842303618
-
Enhanced gene prediction obtained by a combination of existing methods
-
YACOP
-
Tech M, Merkl R, YACOP: Enhanced gene prediction obtained by a combination of existing methods.In Silico Biol, 3:441-51, 2003.
-
(2003)
In Silico Biol
, vol.3
, pp. 441-451
-
-
Tech, M.1
Merkl, R.2
-
8
-
-
0038690315
-
-
Chen LL, Ou HY, Zhang R and Zhang CT, ZCURVE CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes. Biochemical and Biophysical Research Communications, 307: 382-388, 2003.
-
Chen LL, Ou HY, Zhang R and Zhang CT, ZCURVE CoV: a new system to recognize protein coding genes in coronavirus genomes, and its applications in analyzing SARS-CoV genomes. Biochemical and Biophysical Research Communications, 307: 382-388, 2003.
-
-
-
-
9
-
-
2342636373
-
A nucleotide composition constraint of genome sequences
-
Zhang CT and Zhang R, A nucleotide composition constraint of genome sequences. Comput. Biol. Chem., 28: 149-153, 2004.
-
(2004)
Comput. Biol. Chem
, vol.28
, pp. 149-153
-
-
Zhang, C.T.1
Zhang, R.2
-
10
-
-
9644303060
-
A fractal method to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation
-
Zhou LQ, Yu ZG, Deng JQ, Anh V and Long SC, A fractal method to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation. J. Theor. Biol., 232: 559-567, 2005.
-
(2005)
J. Theor. Biol
, vol.232
, pp. 559-567
-
-
Zhou, L.Q.1
Yu, Z.G.2
Deng, J.Q.3
Anh, V.4
Long, S.C.5
-
11
-
-
64949112684
-
Clustering structures of large proteins using multifractal analyses based on a 6-letter model and hydrophobicity scale of amino acids
-
doi:10.1016/j.chaos.2007.08. 014
-
Yang JY, Yu ZG and Anh V, Clustering structures of large proteins using multifractal analyses based on a 6-letter model and hydrophobicity scale of amino acids. Chaos, Solitons and Fractals, doi:10.1016/j.chaos.2007.08. 014, 2009.
-
(2009)
Chaos, Solitons and Fractals
-
-
Yang, J.Y.1
Yu, Z.G.2
Anh, V.3
-
12
-
-
0029047319
-
Prediction of protein folding class using global description of amino acid sequence
-
Dubchak I, Muchanikt I, Holbrook SR and Kim SH, Prediction of protein folding class using global description of amino acid sequence. Proc. Natl. Acad. Sci., 92: 8700-8704, 1995.
-
(1995)
Proc. Natl. Acad. Sci
, vol.92
, pp. 8700-8704
-
-
Dubchak, I.1
Muchanikt, I.2
Holbrook, S.R.3
Kim, S.H.4
-
13
-
-
42149132666
-
Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides
-
Yang JY, Zhou Y, Yu ZG, Anh V and Zhou LQ, Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides. BMC Bioinformatics, 9(1):113, 2008.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 113
-
-
Yang, J.Y.1
Zhou, Y.2
Yu, Z.G.3
Anh, V.4
Zhou, L.Q.5
-
14
-
-
0031760475
-
A new fourier transform approach for protein. coding measure based on the format of the Z curve
-
Yan M, Lin ZS, and Zhang CT, A new fourier transform approach for protein. coding measure based on the format of the Z curve. Bioinformatics, 14: 685-690, 1998.
-
(1998)
Bioinformatics
, vol.14
, pp. 685-690
-
-
Yan, M.1
Lin, Z.S.2
Zhang, C.T.3
-
15
-
-
0035477134
-
A computational approach to identify genes for functional RNAs in genomic sequences
-
Carter RJ, Dubchak I and Holbrook SR, A computational approach to identify genes for functional RNAs in genomic sequences. Nucleic Acids Res., 29: 3928-3938, 2001.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 3928-3938
-
-
Carter, R.J.1
Dubchak, I.2
Holbrook, S.R.3
-
16
-
-
0042622243
-
SVMProt: Web-based support vector machine software for functional classification of a protein from its primary sequence
-
Cai CZ, Han LY, Ji ZL, Chen X and Chen YZ, SVMProt: web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic Acids Res., 31: 3692-3697, 2003.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3692-3697
-
-
Cai, C.Z.1
Han, L.Y.2
Ji, Z.L.3
Chen, X.4
Chen, Y.Z.5
-
17
-
-
13244289774
-
Descriptorbased protein remote homology identification
-
Zhang Z, Kochhar S and Grigorov MG, Descriptorbased protein remote homology identification. Protein Sci., 14: 431-444, 2005.
-
(2005)
Protein Sci
, vol.14
, pp. 431-444
-
-
Zhang, Z.1
Kochhar, S.2
Grigorov, M.G.3
-
18
-
-
33747816816
-
a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence
-
PROFEAT
-
Li ZR, Lin HH, Han LY, Jiang L, Chen X and Chen YZ, PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. Nucleic Acids Res., 34: W32-W37, 2006.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Li, Z.R.1
Lin, H.H.2
Han, L.Y.3
Jiang, L.4
Chen, X.5
Chen, Y.Z.6
-
19
-
-
34147174475
-
MED: A new non-supervised gene prediction algorithm for bacterial and archaeal genomes
-
Zhu HQ, Hu GQ, Yang YF,Wang J and She ZS,MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes. BMC Bioinformatics., 8: 97(1-14), 2007.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1-14
, pp. 97
-
-
Zhu, H.Q.1
Hu, G.Q.2
Yang, Y.F.3
Wang, J.4
She, Z.S.5
-
20
-
-
0026059039
-
Analysis of distribution of bases in the coding sequences by a diagrammatic technique
-
Zhang CT, and Zhang R, Analysis of distribution of bases in the coding sequences by a diagrammatic technique. Nucleic Acids Res., 19: 6313-6317, 1991.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 6313-6317
-
-
Zhang, C.T.1
Zhang, R.2
-
21
-
-
0034662286
-
-
Zhang CT andWang J, Recognition of Protein Coding Genes in the Yeast Genome at Better Than 95% Accuracy Based on the Z curve. Nucleic Acids Res., 28: 2804-2814, 2000.
-
Zhang CT andWang J, Recognition of Protein Coding Genes in the Yeast Genome at Better Than 95% Accuracy Based on the Z curve. Nucleic Acids Res., 28: 2804-2814, 2000.
-
-
-
-
23
-
-
0003922190
-
-
2nd ed, John Wiley & Sons, New York
-
Duda RO, Hart PE, and Stork DG, Pattern Classification, 2nd ed., John Wiley & Sons, New York, 2001.
-
(2001)
Pattern Classification
-
-
Duda, R.O.1
Hart, P.E.2
Stork, D.G.3
-
25
-
-
33645166563
-
Clustering of protein structures using hydrophobic free energy and solvent accessibility of proteins
-
Yu ZG, Anh V, Lau KS and Zhou LQ, Clustering of protein structures using hydrophobic free energy and solvent accessibility of proteins. Phys. Rev. E, 73: 031920, 2006.
-
(2006)
Phys. Rev. E
, vol.73
, pp. 031920
-
-
Yu, Z.G.1
Anh, V.2
Lau, K.S.3
Zhou, L.Q.4
-
26
-
-
0035575801
-
Multifractal characterisation of length sequences of coding and noncoding segments in a complete genome
-
Yu ZG, Anh V and Lau KS, Multifractal characterisation of length sequences of coding and noncoding segments in a complete genome. Physica A, 301: 351-361, 2001.
-
(2001)
Physica A
, vol.301
, pp. 351-361
-
-
Yu, Z.G.1
Anh, V.2
Lau, K.S.3
-
27
-
-
0035442627
-
Measure representation and multifractal analysis of complete genomes
-
Yu ZG, Anh V and Lau KS, Measure representation and multifractal analysis of complete genomes. Phys. Rev. E, 64: 031903, 2001.
-
(2001)
Phys. Rev. E
, vol.64
, pp. 031903
-
-
Yu, Z.G.1
Anh, V.2
Lau, K.S.3
|