Comparative phylogeography of brown (Sula leucogaster) and red-footed boobies (S. sula): The influence of physical barriers and habitat preference on gene flow in pelagic seabirds

Molecular Phylogenetics and Evolution

Volumn 54, Issue 3, 2010, Pages 883-896

  Morris Pocock, J A ^a   Steeves, T E ^b   Estela, F A ^c   Anderson, D J ^d   Friesen, V L ^a  

^a QUEEN S UNIVERSITY   (Canada)

^b UNIVERSITY OF CANTERBURY   (New Zealand)

^c Carrera 24 Na 4 20 Barrio Miraflores   (Colombia)

^d WAKE FOREST UNIVERSITY   (United States)

Author keywords

Habitat preference; Population differentiation; Seabird; Statistical phylogeography; Sula leucogaster; Sula sula

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; BIRD; CLASSIFICATION; DNA SEQUENCE; ECOSYSTEM; FEMALE; GENE FLOW; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; MOLECULAR EVOLUTION; PHYLOGENY; POPULATION DYNAMICS; POPULATION GENETICS; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE; SPECIES DIFFERENTIATION;

ANIMALS; BAYES THEOREM; BIRDS; DNA, MITOCHONDRIAL; ECOSYSTEM; EVOLUTION, MOLECULAR; FEMALE; GENE FLOW; GENETIC SPECIATION; GENETIC VARIATION; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; MODELS, GENETIC; PHYLOGENY; POPULATION DYNAMICS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

SULA LEUCOGASTER; SULA SULA;

EID: 76449111380     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.11.013     Document Type: Article

References (71)

1. Abbott C.L., Double M.C., Trueman J.W., Robinson A., and Cockburn A. An unusual source of apparent mitochondrial heteroplasmy: duplicate mitochondrial control regions in Thalassarche albatrosses. Mol. Ecol. 14 (2005) 3605-3613
2. Avise J.C., Nelson W.S., Bowen B.W., and Walker D. Phylogeography of colonially nesting seabirds, with special reference to global matrilineal patterns in the sooty tern (Sterna fuscata). Mol. Ecol. 9 (2000) 1783-1792
3. Backstrom N., Fagerberg S., and Ellegren H. Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome. Mol. Ecol. 17 (2008) 964-980
4. Baião P.C., and Parker P.G. Maintenance of plumage polymorphism in red-footed boobies in the Galápagos archipelago: observations of mate choice and habitat association. Condor 110 (2008) 544-548
5. Baião P.C., Schreiber E.A., and Parker P.G. The genetic basis of the plumage polymorphism in red-footed boobies (Sula sula): a Melanocortin-1 Receptor analysis. J. Hered. 98 (2007) 287-292
6. Baker A.J., and Marshall H.D. Mitochondrial control region sequences as tools for understanding evolution. In: Mindell D.P. (Ed). Avian Molecular Evolution and Systematics (1997), Academic Press, London 51-82
7. Benzie J.A.H. Genetic structure of marine organisms and SE Asian biogeography. In: Hall R., and Holloway J.D. (Eds). Biogeography and geological evolution of SE Asia (1998), Backhuys Publishers, Leiden 197-209
8. Burg T.M., and Croxall J.P. Global relationships amongst black-browed and grey-headed albatrosses: analysis of population structure using mitochondrial DNA and microsatellites. Mol. Ecol. 10 (2001) 2647-2660
9. Burg T.M., and Croxall J.P. Global population structure and taxonomy of the wandering albatross species complex. Mol. Ecol. 13 (2004) 2345-2355
10. Chakraborty R. Mitochondrial DNA polymorphism reveals hidden heterogeneity within some Asian populations. Am. J. Hum. Genet. 47 (1990) 87-94
11. Chappell J., and Shackleton N.J. Oxygen isotopes and sea-level. Nature 324 (1986) 137-140
12. Clement M., Posada D., and Crandall K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9 (2000) 1657-1659
13. Coyne J.A., and Orr H.A. Speciation (2004), Sinauer Associates, Sunderland, MA
14. Desjardins P., and Morais R. Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. J. Mol. Biol. 212 (1990) 599-634
15. Dunlop J.N., Surman C.A., and Wooller R.D. The marine distribution of seabirds from Christmas Island, Indian Ocean. Emu 101 (2001) 19-24
16. Eberhard J.R., Wright T.F., and Bermingham E. Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona. Mol. Biol. Evol. 18 (2001) 1330-1342
17. Ewens W.J. Sampling theory of selectively neutral alleles. Theor. Popul. Biol. 3 (1972) 87-112
18. Excoffier L., Smouse P.E., and Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131 (1992) 479-491
19. Excoffier L., Laval G., and Schneider S. ARLEQUIN version 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1 (2005) 47-50
20. Friesen V.L., Congdon B.C., Walsh H.E., and Birt T.P. Intron variation in marbled murrelets detected using analyses of single-stranded conformation polymorphisms. Mol. Ecol. 6 (1997) 1047-1058
21. Friesen V.L., Burg T.M., and Mccoy K.D. Mechanisms of population differentiation in seabirds. Mol. Ecol. 16 (2007) 1765-1785
22. Fu Y. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147 (1997) 915-925
23. Gavrilets S. Perspective: models of speciation: what have we leaned in 40 years?. Evolution 57 (2003) 2197-2215
24. Gómez-Díaz E., González-Solís J., Peinado M.A., and Page R.D.M. Phylogeography of the Calonectris shearwaters using molecular and morphometric data. Mol. Phylogen. Evol. 41 (2006) 322-332
25. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
26. Hey J., and Nielsen R. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167 (2004) 747-760
27. Hey J., and Nielsen R. Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc. Natl. Acad. Sci. USA 104 (2007) 2785-2790
28. Ho S.Y.W., Phillips M.J., Cooper A., and Drummond A.J. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol. Biol. Evol. 22 (2005) 1561-1568
29. Hutchison D.W., and Templeton A.R. Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution 53 (1999) 1898-1914
30. Huyvaert K.P., and Anderson D.J. Limited dispersal by Nazca boobies Sula granti. J. Avian Biol. 35 (2004) 46-53
31. Kidd M.G., and Friesen V.L. Analysis of mechanisms of microevolutionary change in Cepphus guillemots using patterns of control region variation. Evolution 52 (1998) 1158-1168
32. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
33. Kuhner M.K. LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters. Bioinformatics 22 (2006) 768-770
34. Kuhner M.K., Yamato J., and Felsenstein J. Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149 (1998) 429-434
35. Millar C.D., Dodd A., Anderson J., Gibb G.C., Ritchie P.A., Baroni C., Woodhams M.D., Hendy M.D., and Lambert D.M. Mutation and evolutionary rates in Adélie penguins from the Antarctic. PLoS Genet. 4 (2008) 10
36. Moum T., and Arnason E. Genetic diversity and population history of two related seabird species based on mitochondrial DNA control region sequences. Mol. Ecol. 10 (2001) 2463-2478
37. Moum T., and Bakke I. Mitochondrial control region structure and single site heteroplasmy in the razorbill (Alca torda; Aves). Curr. Genet. 39 (2001) 198-203
38. Narum S.R. Beyond Bonferroni: less conservative analyses for conservation genetics. Conserv. Genet. 7 (2006) 783-787
39. Nei M. Molecular Evolutionary Genetics (1987), Columbia University Press, New York
40. Nelson J.B. The Sulidae: Gannets and Boobies (1978), Oxford University Press, Oxford
41. Nelson J.B. Pelicans, Cormorants, and their Relatives (2005), Oxford University Press, Oxford
42. Nicholls D.G., Robertson C.J.R., Prince P.A., Murray M.D., Walker K.J., and Elliott G.P. Foraging niches of three Diomedea albatrosses. Mar. Ecol. Prog. Ser. 231 (2002) 269-277
43. Nielsen R., and Beaumont M.A. Statistical inferences in phylogeography. Mol. Ecol. 18 (2009) 1034-1047
44. Nylander J. MrModeltest v2. Program distributed by the author (2004), Evolutionary Biology Centre, Uppsala University, Uppsala
45. O'Neill, P., Heatwole, H., Preker, M., Jones, M., 1996. Populations, movements and site fidelity of brown and masked boobies on the Swain Reefs, Great Barrier Reef, as shown by banding recoveries. Technical Report No. 11. CRC Reef Research Centre, Townsville, Australia, pp. 1-36.
46. Phillips R.A., Croxall J.P., Silk J.R.D., and Briggs D.R. Foraging ecology of albatrosses and petrels from South Georgia: two decades of insights from tracking technologies. Aquat. Conserv. 17 (2007) S6-S21
47. Pierotti R. Isolating mechanisms in seabirds. Evolution 41 (1987) 559-570
48. Pitman R.L., and Balance L.T. The changing status of marine birds breeding at San Benedicto Island, Mexico. Wilson Bull. 114 (2002) 11-19
49. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
50. Sandoval-Castillo J., Rocha-Olivares A., Villavicencio-Garayzar C., and Balart E. Cryptic isolation of Gulf of California shovelnose guitarfish evidenced by mitochondrial DNA. Mar. Biol. 145 (2004) 983-988
51. Schreiber E.A., and Norton R.L. Brown booby: Sula Leucogaster. In: Gill F.B., and Pool A. (Eds). The Birds of North America No. 649 (2002), American Ornithologists' Union and The Academy of Natural Sciences of Philadelphia, Philadelphia 1-24
52. Singh T.R., Shneor O., and Huchon D. Bird mitochondrial gene order: insight from 3 Warbler mitochondrial genomes. Mol. Biol. Evol. 25 (2008) 475
53. Smith A.L., Monteiro L., Hasegawa O., and Friesen V.L. Global phylogeography of the band-rumped storm-petrel (Oceanodroma castro; Procellariiformes: Hydrobatidae). Mol. Phylogenet. Evol. 43 (2007) 755-773
54. Smouse P.E., Long J.C., and Sokal R.R. Multiple-regression and correlation extensions of the Mantel test of matrix correspondence. Syst. Zool. 35 (1986) 627-632
55. Sorenson M., and Quinn T. Numts: a challenge for avian systematics and population biology. Auk 115 (1998) 214-221
56. Steeves T.E., Anderson D.J., McNally H., Kim M.H., and Friesen V.L. Phylogeography of Sula: the role of physical barriers to gene flow in the diversification of tropical seabirds. J. Avian Biol. 34 (2003) 217-223
57. Steeves T.E., Anderson D.J., and Friesen V.L. The Isthmus of Panama: a major physical barrier to gene flow in a highly mobile pantropical seabird. J. Evol. Biol. 18 (2005) 1000-1008
58. Steeves T.E., Anderson D.J., and Friesen V.L. A role for nonphysical barriers to gene flow in the diversification of a highly vagile seabird, the masked booby (Sula dactylatra). Mol. Ecol. 14 (2005) 3877-3887
59. Stepien C.A., Rosenblatt R.H., and Bargmeyer B.A. Phylogeography of the spotten sand bass, Paralabrax maculatofasciatus: divergence of Gulf of California and Pacific coast populations. Evolution 55 (2001) 1852-1862
60. Tajima F. Evolutionary relationship of DNA sequences in finite populations. Genetics 105 (1983) 437-460
61. Tatarenkov A., and Avise J.C. Rapid concerted evolution in animal mitochondrial DNA. Proc. Roy. Soc. Lond. B Biol. 274 (2007) 1795-1798
62. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
63. VanderWerf E.A., Becker B.L., Eijzenga J., and Eijzenga H. Nazca booby Sula granti abd Brewster's brown booby Sula leucogaster brewsteri in the Hawaiian Islands and Johnston and Palmyra Atolls. Mar. Ornithol. 36 (2008) 67-71
64. Voris H.K. Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. J. Biogeogr. 27 (2000) 1153-1167
65. Watterson G.A. Homozygosity test of neutrality. Genetics 88 (1978) 405-417
66. Weimerskirch H., Le Corre M., Jaquemet S., and Marsac F. Foraging strategy of a tropical seabird, the red-footed booby, in a dynamic marine environment. Mar. Ecol. Prog. Ser. 288 (2005) 251-261
67. Weimerskirch H., Le Corre M., and Bost C.A. Foraging strategy of masked boobies from the largest colony in the world: relationship to environmental conditions and fisheries. Mar. Ecol. Prog. Ser. 362 (2008) 291-302
68. Wenink P., Baker A.J., and Tilanus M.G.J. Mitochondrial control-region sequences in two shorebird species, the turnstone and the dunlin, and their utility in population genetic studies. Mol. Biol. Evol. 11 (1994) 22-31
69. Wenink P.W., Baker A.J., Roesner H.U., and Tilanus M.G.J. Global mitochondrial DNA phylogeography of holarctic breeding dunlins (Calidris alpina). Evolution 50 (1996) 318-330
70. Whitlock M.C., and McCauley D.E. Indirect measures of gene flow and migration: FST ≠ 1/(4Nm + 1). Heredity 82 (1999) 117-125
71. Wilson A.C., Cann R.L., Carr S.M., George M., Gyllensten U.B., Helm-Bychowski K.M., Higuchi R.G., Palumbi S.R., Prager E.M., Sage R.D., and Stoneking M. Mitochondrial DNA and two perspectives on evolutionary genetics. Biol. J. Linn. Soc. 26 (1985) 375-400