Microclimate and forest management alter fungal-to-bacterial ratio and N2O-emission during rewetting in the forest floor and mineral soil of mountainous beech forests

Biogeochemistry

Volumn 97, Issue 1, 2010, Pages 55-70

  Blagodatskaya, E ^a,c   Dannenmann, M ^b   Gasche, R ^b   Butterbach Bahl, K ^b  

^a INSTITUTE OF PHYSICOCHEMICAL AND BIOLOGICAL PROBLEMS IN SOIL SCIENCE   (Russian Federation)

^b KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

^c UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

Cycloheximide; Forest soils and management; Fungal to bacterial ratio; Nitrous oxide emission; Streptomycin; Thinning

Indexed keywords

ANTIBIOTICS; BIOGENIC EMISSION; DECIDUOUS FOREST; FOREST FLOOR; FOREST MANAGEMENT; FOREST SOIL; FUNGUS; INHIBITOR; MICROBIAL ACTIVITY; MICROCLIMATE; MONTANE FOREST; NITROUS OXIDE; REWETTING; THINNING;

BACTERIA (MICROORGANISMS); FAGUS; FUNGI;

EID: 75849152914     PISSN: 01682563     EISSN: 1573515X     Source Type: Journal    
DOI: 10.1007/s10533-009-9310-3     Document Type: Article

References (52)

1. Anderson JPE, Domsch KH (1975) Measurement of bacterial and fungal contributions to respiration of selected agricultural and forest soils. Can J Microbiol 21: 314-322.
2. Anderson JPE, Domsch KH (1978) A physiological method for the quantitative measurement of microbial biomass in soils. Soil Biol Biochem 10: 215-221. doi: 10. 1016/0038-0717(78)90099-8.
3. Bailey VL, Smith JL, Bolton H Jr (2002) Fungal-to-bacterial ratios in soils investigated for enhanced C sequestration. Soil Biol Biochem 34: 997-1007. doi: 10. 1016/S0038-0717(02)00033-0.
4. Beare MH, Neely CL, Coleman DC, Hargrove WL (1990) A substrate-induced respiration (SIR) method for measurement of fungal and bacterial biomass on plant residues. Soil Biol Biochem 22: 585-594. doi: 10. 1016/0038-0717(90)90002-H.
5. Blagodatskaya EV, Anderson TH (1998) Interactive effects of pH and substrate quality on the fungal-to-bacterial ratio and qCO2 of microbial communities in forest soils. Soil Biol Biochem 30: 1269-1274. doi: 10. 1016/S0038-0717(98)00050-9.
6. Bollag JM, Tung G (1972) Nitrous oxide release by soil fungi. Soil Biol Biochem 4: 271-276. doi: 10. 1016/0038-0717(72)90021-1.
7. 4 in a tropical rain forest ecosystem. Global Biogeochem Cycles 18: GB3012. doi: 10. 1029/2004GB002243.
8. - production in a forest and an agricultural soil. Biol Fertil Soils 27: 27-34. doi: 10. 1007/s003740050395.
9. Cavigelli MA, Robertson GP (2001) Role of denitrifier diversity in rates on nitrous oxide consumption in a terrestrial ecosystem. Soil Biol Biochem 33: 297-310. doi: 10. 1016/S0038-0717(00)00141-3.
10. 2O in two soils. Biol Fertil Soils 28: 19-26. doi: 10. 1007/s003740050458.
11. 2O, and NO). Microbiol Rev 60: 609-640.
12. Dannenmann M, Gasche R, Ledebuhr A, Papen H (2006) Effects of forest management on soil N cycling in beech forests stocking on calcareous soils. Plant Soil 287: 279-300. doi: 10. 1007/s11104-006-9077-4.
13. Dannenmann M, Gasche R, Ledebuhr A, Holst T, Mayer H, Papen H (2007a) The effect of forest management on trace gas exchange at the pedosphere-atmosphere interface in beech (Fagus sylvatica L.) forests stocking on calcareous soils. Eur J For Res 126: 331-346. doi: 10. 1007/s10342-006-0153-3.
14. 2O production in the forest floor of beech stands as influenced by forest management. J Plant Nutr Soil Sci 170: 134-144. doi: 10. 1002/jpln. 200620644.
15. Dannenmann M, Butterbach-Bahl K, Gasche R, Willibald G, Papen H (2008) Dinitrogen emissions and the N2: N2O emission ratio of a Rendzic Leptosol as influenced by pH and forest thinning. Soil Biol Biochem 40: 2317-2323. doi: 10. 1016/j. soilbio. 2008. 05. 009.
16. Davidson EA (1992) Sources of nitric oxide and nitrous oxide following wetting of dry soil. Soil Sci Soc Am J 56: 95-102.
17. 2O in a seasonally dry tropical forest. Ecology 74: 130-139. doi: 10. 2307/1939508.
18. Dendooven L, Anderson JM (1994) Dynamics of reduction enzymes involved in the denitrification process in pasture soil. Soil Biol Biochem 26: 1501-1506. doi: 10. 1016/0038-0717(94)90091-4.
19. Dendooven L, Splatt P, Anderson JM (1994) The use of chloramphenicol in the study of the denitrification process: some side effects. Soil Biol Biochem 26: 925-927. doi: 10. 1016/0038-0717(94)90309-3.
20. Dendooven L, Duchateau L, Anderson JM (1996) Gaseous products of the denitrification process as affected by the antecedent water regime of the soil. Soil Biol Biochem 28: 239-245. doi: 10. 1016/0038-0717(95)00132-8.
21. Duguay KJ, Klironomos JN (2000) Direct and indirect effects of enhanced UV-B radiation on the decomposing and competitive abilities of saprobic fungi. Appl Soil Ecol 14: 157-164. doi: 10. 1016/S0929-1393(00)00049-4.
22. Fenn ME, Poth MA, Jonson DW (1996) Evidence for nitrogen saturation in the San Bernadino Mountains in Southern California. For Ecol Manag 82: 211-230.
23. Frey SD, Elliott ET, Paustian K (1999) Bacterial and fungal abundance and biomass in conventional and no-tillage agroecosystems along two climatic gradients. Soil Biol Biochem 31: 573-585. doi: 10. 1016/S0038-0717(98)00161-8.
24. Geßler A, Schrempp S, Matzarakis A, Mayer H, Rennenberg H, Adams MA (2001) Radiation modifies the effect of water availability on the carbon isotope composition of beech (Fagus sylvatica L.). New Phytol 50: 653-664. doi: 10. 1046/j. 1469-8137. 2001. 00136. x.
25. Hayatsu M, Tago K, Saito M (2008) Various players in the nitrogen cycle: diversity and functions of the microorganisms involved in nitrification and denitrification. Soil Sci Plant Nutr 54(1): 33-45.
26. Hoffmann G (1991) Methodenbuch Band 1, Die Untersuchung von Böden. 4. Auflage, VDLUFA-Verlag, Darmstadt.
27. Holst T, Hauser S, Kirchgäßner A, Matzarakis A, Mayer H, Schindler D (2004a) Measuring and modelling plant area index in beech stands. Int J Biometeorol 48: 192-201. doi: 10. 1007/s00484-004-0201-y.
28. Holst T, Mayer H, Schindler D (2004b) Microclimate within beech stands-Part II: thermal conditions. Eur J For Res 123: 13-28. doi: 10. 1007/s10342-004-0019-5.
29. Holst T, Rost J, Mayer H (2005) Net radiation balance for two forested slopes on opposite sides of a valley. Int J Biometeorol 49: 275-284. doi: 10. 1007/s00484-004-0251-1.
30. Ingham ER, Horton KA (1987) Bacterial, fungal and protozoan responses to chlorophorm fumigation in stored soil. Soil Biol Biochem 19: 545-550. doi: 10. 1016/0038-0717(87)90097-6.
31. Joergensen RG, Wichern F (2008) Quantitative assessment of the fungal contribution to microbial tissue in soil. Soil Biol Biochem 40: 2977-2991. doi: 10. 1016/j. soilbio. 2008. 08. 017.
32. Kobayashi M, Matsuo Y, Takimoto A, Suzuki S, Maruo F, Shoun H (1995) Denitrification, a novel type of respiratory metabolism in fungal mitochondrion. J Biol Chem 271: 16263-16267.
33. Kudo T, Takaya N, Park SY, Shiro Y, Shoun H (2001) A positively charged cluster formed in the heme-distal pocket of cytochrome P450nor is essential for interaction with NADH. J Biol Chem 276: 5020-5026. doi: 10. 1074/jbc. M007244200.
34. Laughlin RJ, Stevens RJ (2002) Evidence for fungal dominance of denitrification and co-denitrification in a grassland soil. Soil Sci Soc Am J 66: 1540-1548.
35. Lin Q, Brookes PC (1999) Comparison of substrate induced respiration, selective inhibition and biovolume measurements of microbial biomass and its community structure in unamended, ryegrass-amended, fumigated and pesticide-treated soils. Soil Biol Biochem 31: 1999-2014. doi: 10. 1016/S0038-0717(99)00122-4.
36. Lloyd D, Boddy L, Davies KJP (1987) Persistence of bacterial denitrification capacity under aerobic conditions: the rule rather than the exception. FEMS Microbiol Ecol 45: 185-190. doi: 10. 1111/j. 1574-6968. 1987. tb02354. x.
37. Mayer H, Holst T, Schindler D (2002) Microclimate within beech stands-part I: photosynthetically active radiation. Forstw Cbl 121: 301-321. doi: 10. 1046/j. 1439-0337. 2002. 02038. x.
38. 2O production by heterotrophic N transformations in a semiarid soil. Appl Soil Ecol 32: 253-263. doi: 10. 1016/j. apsoil. 2005. 06. 005.
39. 2O emission in submerged soils. Soil Biol Biochem 36: 1057-1066. doi: 10. 1016/j. soilbio. 2004. 03. 001.
40. Moody SA, Newsham KK, Ayres PG, Paul ND (1999) Variation in the responses of litter and phylloplane fungi to UV-B radiation (290-315 nm). Mycol Res 103: 1469-1477. doi: 10. 1017/S0953756299008783.
41. 2O emissions in grassland soil during freezing and thawing. Soil Biol Biochem 34: 1325-1331. doi: 10. 1016/S0038-0717(02)00076-7.
42. Munch JC (1989) Organism specific denitrification in samples of an Udifluvent with different nitrate concentrations. Z Pflanzenernaehr Bodenkd 152: 395-400. doi: 10. 1002/jpln. 19891520410.
43. Neely CL, Beare MH, Hargrove WL, Coleman DC (1991) Relationships between fungal and bacterial substrate-induced respiration, biomass and plant residue decomposition. Soil Biol Biochem 23: 947-954. doi: 10. 1016/0038-0717(91)90175-J.
44. 2O emissions. J Geophys Res 104: 18487-18503. doi: 10. 1029/1999JD900293.
45. Scheu S, Parkinson D (1994) Changes in bacterial and fungal biomass C, bacterial and fungal biovolume and ergosterol content after drying, remoistening and incubation of different layers of cool temperate forest soils. Soil Biol Biochem 26: 1515-1525. doi: 10. 1016/0038-0717(94)90093-0.
46. Shoun H, Kim D, Uchiyama H, Sugiyama J (1992) Denitrification by fungi. FEMS Microbiol Lett 94: 277-282. doi: 10. 1111/j. 1574-6968. 1992. tb05331. x.
47. Skiba U, Smith KA, Fowler D (1993) Nitrification and denitrification as sources of nitric oxide in a sandy loam soil. Soil Biol Biochem 25: 1527-1536. doi: 10. 1016/0038-0717(93)90007-X.
48. Smith MS, Tiedje JM (1979) Phases of denitrification following oxygen depletion in soil. Soil Biol Biochem 11: 261-267. doi: 10. 1016/0038-0717(79)90071-3.
49. 2O production following chloropicrin fumigation. Appl Soil Ecol 31: 101-109. doi: 10. 1016/j. apsoil. 2005. 03. 006.
50. Stevens RJ, Laughlin RJ, Burns LC, Arah JRM, Hood RC (1997) Measuring the contribution of nitrification and denitrification to the flux of nitrous oxide from soil. Soil Biol Biochem 29: 139-151. doi: 10. 1016/S0038-0717(96)00303-3.
51. Uchimura H, Enjoji H, Seki T, Taguchi A, Takaya N, Shoun H (2002) Nitrate reductase-formate dehydrogenase couple involved in the fungal denitrification by Fusarium oxysporum. J Biochem 131: 579-586.
52. West AW (1986) Improvement of the selective respiratory inhibition technique to measure eukaryote: prokaryote ratios in soils. J Microbiol Methods 5: 125-138. doi: 10. 1016/0167-7012(86)90008-4.