메뉴 건너뛰기




Volumn 120, Issue 3, 2010, Pages 587-606

Clustering, haplotype diversity and locations of MIC-3: A unique root-specific defense-related gene family in Upland cotton (Gossypium hirsutum L.)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMAL LOCATION; COMPARATIVE ANALYSIS; CONSENSUS SEQUENCE; COTTON (GOSSYPIUM HIRSUTUM L.); COTTON GENES; COTTON PLANTS; DEFENSE RELATED GENES; GENE FAMILIES; GOSSYPIUM; HAPLOTYPE DIVERSITY; HAPLOTYPES; INTERGENIC REGIONS; MOLECULAR LEVELS; PCR AMPLIFICATION; ROOT KNOT NEMATODE; SELECTION PRESSURES; SEQUENCE ANALYSIS; TETRAPLOID COTTON;

EID: 75849150541     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-1178-z     Document Type: Article
Times cited : (12)

References (43)
  • 1
    • 33645122069 scopus 로고    scopus 로고
    • Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids
    • Adams KL, Wendel JF (2005) Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids. Genetics 171: 2130-2142.
    • (2005) Genetics , vol.171 , pp. 2130-2142
    • Adams, K.L.1    Wendel, J.F.2
  • 3
    • 35248812911 scopus 로고    scopus 로고
    • Transcriptome profiling, sequence characterization, and SNP-based chromosomal assignment of the EXPANSIN genes in cotton
    • An C, Saha S, Jenkins JN, Scheffler BE, Wilkins TA, Stelly D (2007) Transcriptome profiling, sequence characterization, and SNP-based chromosomal assignment of the EXPANSIN genes in cotton. Mol Genet Genomics 278(5): 539-553.
    • (2007) Mol Genet Genomics , vol.278 , Issue.5 , pp. 539-553
    • An, C.1    Saha, S.2    Jenkins, J.N.3    Scheffler, B.E.4    Wilkins, T.A.5    Stelly, D.6
  • 4
    • 42149125441 scopus 로고    scopus 로고
    • Cotton R2R3-MYB (Gossypium spp.) transcription factors SNP identification, phylogenomic characterization, chromosome localization, and linkage mapping
    • An C, Saha S, Jenkins JN, Ma DP, Scheffler BE, Kohel RJ, Yu JZ, Stelly DM (2008) Cotton R2R3-MYB (Gossypium spp.) transcription factors SNP identification, phylogenomic characterization, chromosome localization, and linkage mapping. Theor Appl Genet 116(7): 1015-1026.
    • (2008) Theor Appl Genet , vol.116 , Issue.7 , pp. 1015-1026
    • An, C.1    Saha, S.2    Jenkins, J.N.3    Ma, D.P.4    Scheffler, B.E.5    Kohel, R.J.6    Yu, J.Z.7    Stelly, D.M.8
  • 5
    • 0141678039 scopus 로고    scopus 로고
    • Genome-level evolution of resistance genes in Arabidopsis thaliana
    • Baumgarten A, Cannon S, Spangler R, May G (2003) Genome-level evolution of resistance genes in Arabidopsis thaliana. Genetics 165: 309-319.
    • (2003) Genetics , vol.165 , pp. 309-319
    • Baumgarten, A.1    Cannon, S.2    Spangler, R.3    May, G.4
  • 6
    • 0000771039 scopus 로고
    • The origin of American tetraploid Gossypium species
    • Beasley JO (1940) The origin of American tetraploid Gossypium species. Am Nat 74: 285-286.
    • (1940) Am Nat , vol.74 , pp. 285-286
    • Beasley, J.O.1
  • 7
    • 0002470026 scopus 로고
    • Meiotic chromosome behavior in species, species hybrids, haploids and induced polyploidy of Gossypium
    • Beasley JO (1942) Meiotic chromosome behavior in species, species hybrids, haploids and induced polyploidy of Gossypium. Genetics 27: 25-54.
    • (1942) Genetics , vol.27 , pp. 25-54
    • Beasley, J.O.1
  • 8
    • 0001526769 scopus 로고
    • The identification of chromosomes of Gossypium hirsutum L. by means of translocations
    • Brown MS (1980) The identification of chromosomes of Gossypium hirsutum L. by means of translocations. J Hered 71: 266-274.
    • (1980) J Hered , vol.71 , pp. 266-274
    • Brown, M.S.1
  • 9
    • 0002424918 scopus 로고
    • Phenylalamine ammonia-lyase activity in tomato roots infected and resistant to the root-knot nematode, Meloidogyne incognita
    • Brueske CH (1980) Phenylalamine ammonia-lyase activity in tomato roots infected and resistant to the root-knot nematode, Meloidogyne incognita. Physiol Plant Pathol 16: 409-414.
    • (1980) Physiol Plant Pathol , vol.16 , pp. 409-414
    • Brueske, C.H.1
  • 10
    • 0033524389 scopus 로고    scopus 로고
    • Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana
    • Caicedo AL, Schaal BA, Kunkel BN (1999) Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana. Proc Natl Acad Sci USA 96: 302-306.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 302-306
    • Caicedo, A.L.1    Schaal, B.A.2    Kunkel, B.N.3
  • 11
    • 0009163948 scopus 로고    scopus 로고
    • Changes in cotton root proteins correlated with resistance to root-knot nematode development
    • Callahan FE, Jenkins JN, Creech RG, Lawrence GW (1997) Changes in cotton root proteins correlated with resistance to root-knot nematode development. J Cotton Sci 1: 38-47.
    • (1997) J Cotton Sci , vol.1 , pp. 38-47
    • Callahan, F.E.1    Jenkins, J.N.2    Creech, R.G.3    Lawrence, G.W.4
  • 12
    • 27244434458 scopus 로고    scopus 로고
    • Comparison of MIC-3 protein accumulation in response to root-knot nematode infection in cotton lines displaying a range of resistance levels
    • Callahan FE, Zhang X-D, Ma D-P, Jenkins JN, Hayes RW, Tucker ML (2004) Comparison of MIC-3 protein accumulation in response to root-knot nematode infection in cotton lines displaying a range of resistance levels. J Cotton Sci 8: 186-190.
    • (2004) J Cotton Sci , vol.8 , pp. 186-190
    • Callahan, F.E.1    Zhang, X.-D.2    Ma, D.-P.3    Jenkins, J.N.4    Hayes, R.W.5    Tucker, M.L.6
  • 13
    • 33846272114 scopus 로고    scopus 로고
    • Plant NBS-LRR proteins in pathogen sensing and host defense
    • Deyoung JB, Innes RW (2006) Plant NBS-LRR proteins in pathogen sensing and host defense. Nat Immunol 7: 1243-1249.
    • (2006) Nat Immunol , vol.7 , pp. 1243-1249
    • Deyoung, J.B.1    Innes, R.W.2
  • 14
    • 34447283003 scopus 로고    scopus 로고
    • A microsatellite-based, gene-rich linkage map reveals genome structure, function, and evolution in Gossypium
    • Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B, Zhang T (2007) A microsatellite-based, gene-rich linkage map reveals genome structure, function, and evolution in Gossypium. Genetics 176: 527-541.
    • (2007) Genetics , vol.176 , pp. 527-541
    • Guo, W.1    Cai, C.2    Wang, C.3    Han, Z.4    Song, X.5    Wang, K.6    Niu, X.7    Wang, C.8    Lu, K.9    Shi, B.10    Zhang, T.11
  • 15
    • 63949083339 scopus 로고    scopus 로고
    • Integrative placement and orientation of non-redundant SSR loci in cotton linkage groups by deficiency analysis
    • Gutierrez OA, Stelly DM, Saha S, Jenkins JN, McCarty JC, Raska DA, Scheffler BE (2009) Integrative placement and orientation of non-redundant SSR loci in cotton linkage groups by deficiency analysis. Mol Breed 23: 693-707.
    • (2009) Mol Breed , vol.23 , pp. 693-707
    • Gutierrez, O.A.1    Stelly, D.M.2    Saha, S.3    Jenkins, J.N.4    McCarty, J.C.5    Raska, D.A.6    Scheffler, B.E.7
  • 16
    • 52049088237 scopus 로고    scopus 로고
    • Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton
    • Hovav R, Chaudhary B, Udall JA, Flagel L, Wendel JF (2008) Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton. Genetics 179: 1725-1733.
    • (2008) Genetics , vol.179 , pp. 1725-1733
    • Hovav, R.1    Chaudhary, B.2    Udall, J.A.3    Flagel, L.4    Wendel, J.F.5
  • 17
    • 36749015120 scopus 로고    scopus 로고
    • Molecular and SNP characterization of two genome-specific transcription factor genes GhMyb8 and GhMyb10 in cotton species
    • Hsu CY, An C, Saha S, Ma DP, Jenkins JN, Scheffler B, Stelly DM (2008) Molecular and SNP characterization of two genome-specific transcription factor genes GhMyb8 and GhMyb10 in cotton species. Euphytica 159: 259-273.
    • (2008) Euphytica , vol.159 , pp. 259-273
    • Hsu, C.Y.1    An, C.2    Saha, S.3    Ma, D.P.4    Jenkins, J.N.5    Scheffler, B.6    Stelly, D.M.7
  • 18
    • 45449118074 scopus 로고    scopus 로고
    • Diversification of Lrk/Tak kinase gene cluster is associated with subfunctionalization and cultivar-specific transcript accumulation in barley
    • Hu P, Wise RP (2008) Diversification of Lrk/Tak kinase gene cluster is associated with subfunctionalization and cultivar-specific transcript accumulation in barley. Funct Integr Genomics 8: 199-209.
    • (2008) Funct Integr Genomics , vol.8 , pp. 199-209
    • Hu, P.1    Wise, R.P.2
  • 19
    • 0038104857 scopus 로고    scopus 로고
    • Genomic gene clustering analysis of pathways in eukaryotes
    • Lee JM, Sonnhammer EL (2003) Genomic gene clustering analysis of pathways in eukaryotes. Genome Res 13(5): 875-882.
    • (2003) Genome Res , vol.13 , Issue.5 , pp. 875-882
    • Lee, J.M.1    Sonnhammer, E.L.2
  • 20
    • 28844473336 scopus 로고    scopus 로고
    • Complexities of chromosome landing in a highly duplicated genome: Toward map-based cloning of a gene controlling blackleg resistance in Brassica napus
    • Mayerhofer R, Wilde K, Mayerhofer M, Lydiate D, Bansal VK, Good AG, Parkin IA (2005) Complexities of chromosome landing in a highly duplicated genome: toward map-based cloning of a gene controlling blackleg resistance in Brassica napus. Genetics 171: 1977-1988.
    • (2005) Genetics , vol.171 , pp. 1977-1988
    • Mayerhofer, R.1    Wilde, K.2    Mayerhofer, M.3    Lydiate, D.4    Bansal, V.K.5    Good, A.G.6    Parkin, I.A.7
  • 21
    • 0013568724 scopus 로고
    • The significance of multivalent formation in three-species Gossypium hybrids
    • Menzel MY, Brown MS (1954) The significance of multivalent formation in three-species Gossypium hybrids. Genetics 39: 546-557.
    • (1954) Genetics , vol.39 , pp. 546-557
    • Menzel, M.Y.1    Brown, M.S.2
  • 22
    • 0008893660 scopus 로고
    • A chromosome translocation breakpoint map of the Gossypium hirsutum genome
    • Menzel MY, Richmond KL, Dougherty BJ (1985) A chromosome translocation breakpoint map of the Gossypium hirsutum genome. J Hered 76: 406-414.
    • (1985) J Hered , vol.76 , pp. 406-414
    • Menzel, M.Y.1    Richmond, K.L.2    Dougherty, B.J.3
  • 23
    • 0032144421 scopus 로고    scopus 로고
    • The root-knot nematode resistance gene Mi from tomato is a member of the leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes
    • Milligan SB, Bodeau J, Yaghoobi J, Kaloshian I, Zabel P, Williamson VM (1998) The root-knot nematode resistance gene Mi from tomato is a member of the leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes. Plant Cell 10(8): 1307-1319.
    • (1998) Plant Cell , vol.10 , Issue.8 , pp. 1307-1319
    • Milligan, S.B.1    Bodeau, J.2    Yaghoobi, J.3    Kaloshian, I.4    Zabel, P.5    Williamson, V.M.6
  • 24
    • 0033083979 scopus 로고    scopus 로고
    • Homologous of the Cf-9 disease resistance gene (Hcr9s) are present at multiple loci on the short arm of tomato chromosome 1
    • Parniske M, Wulff BH, Bonnema G, Thomas CM, Jones DA, Jones JDG (1999) Homologous of the Cf-9 disease resistance gene (Hcr9s) are present at multiple loci on the short arm of tomato chromosome 1. Mol Plant Microbe Interact 12(2): 93-102.
    • (1999) Mol Plant Microbe Interact , vol.12 , Issue.2 , pp. 93-102
    • Parniske, M.1    Wulff, B.H.2    Bonnema, G.3    Thomas, C.M.4    Jones, D.A.5    Jones, J.D.G.6
  • 25
    • 3042593118 scopus 로고    scopus 로고
    • Paralogy and orthology in the Malvaceae rpb2 gene family: Investigation of gene duplication in Hibiscus
    • Pfeil BE, Brubaker CL, Craven LA, Crisp MD (2004) Paralogy and orthology in the Malvaceae rpb2 gene family: investigation of gene duplication in Hibiscus. Mol Biol Evol 21: 1428-1437.
    • (2004) Mol Biol Evol , vol.21 , pp. 1428-1437
    • Pfeil, B.E.1    Brubaker, C.L.2    Craven, L.A.3    Crisp, M.D.4
  • 26
    • 35348887773 scopus 로고    scopus 로고
    • Introgression of resistance to nematode Rotylenchulus reniformis into upland cotton (Gossypium hirsutum) from Gossypium longicalyx
    • Robinson AF, Bell AA, Dighe ND, Menz MA, Nichols RL, Stelly DM (2007) Introgression of resistance to nematode Rotylenchulus reniformis into upland cotton (Gossypium hirsutum) from Gossypium longicalyx. Crop Sci 47: 1865-1877.
    • (2007) Crop Sci , vol.47 , pp. 1865-1877
    • Robinson, A.F.1    Bell, A.A.2    Dighe, N.D.3    Menz, M.A.4    Nichols, R.L.5    Stelly, D.M.6
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou M, Nei N (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, M.1    Nei, N.2
  • 29
    • 0033549777 scopus 로고    scopus 로고
    • Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis
    • Stahl EA, Dwyer G, Mauricio R, Kreitman M, Bergelson J (1999) Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis. Nature 400: 667-671.
    • (1999) Nature , vol.400 , pp. 667-671
    • Stahl, E.A.1    Dwyer, G.2    Mauricio, R.3    Kreitman, M.4    Bergelson, J.5
  • 30
    • 33645219073 scopus 로고    scopus 로고
    • Registration of 17 Upland (Gossypium hirsutum) germplasm lines disomic for different G. barbadense chromosome or arm substitutions
    • Stelly DM, Saha S, Raska DA, Jenkins JN, McCarty JC, Gutierrez OA (2005) Registration of 17 Upland (Gossypium hirsutum) germplasm lines disomic for different G. barbadense chromosome or arm substitutions. Crop Sci 45: 2663-2665.
    • (2005) Crop Sci , vol.45 , pp. 2663-2665
    • Stelly, D.M.1    Saha, S.2    Raska, D.A.3    Jenkins, J.N.4    McCarty, J.C.5    Gutierrez, O.A.6
  • 31
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 40
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 40. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 32
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
    • 33746438091 scopus 로고    scopus 로고
    • A novel approach for characterizing expression levels of genes duplicated by polyploidy
    • Udall JA, Swanson JM, Nettleton D, Percifield RJ, Wendel JF (2006) A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics 173(3): 1823-1827.
    • (2006) Genetics , vol.173 , Issue.3 , pp. 1823-1827
    • Udall, J.A.1    Swanson, J.M.2    Nettleton, D.3    Percifield, R.J.4    Wendel, J.F.5
  • 34
    • 0032754045 scopus 로고    scopus 로고
    • The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley
    • Wei F, Gobelman-Werner K, Morrol SM, Kurth J, Mao L, Wing R, Leister D, Schulze-Lefert P, Wise RP (1999) The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley. Genetics 153: 1929-1949.
    • (1999) Genetics , vol.153 , pp. 1929-1949
    • Wei, F.1    Gobelman-Werner, K.2    Morrol, S.M.3    Kurth, J.4    Mao, L.5    Wing, R.6    Leister, D.7    Schulze-Lefert, P.8    Wise, R.P.9
  • 35
    • 36148975768 scopus 로고    scopus 로고
    • Polyploidy and the evolutionary history of cotton
    • Wendel JF, Cronn C (2003) Polyploidy and the evolutionary history of cotton. Adv Agron 78: 139-186.
    • (2003) Adv Agron , vol.78 , pp. 139-186
    • Wendel, J.F.1    Cronn, C.2
  • 36
    • 3042569650 scopus 로고    scopus 로고
    • Coexpression of neighboring genes in the genome of Arabidopsis thaliana
    • Williums EJB, Bowles DJ (2004) Coexpression of neighboring genes in the genome of Arabidopsis thaliana. Genome Res 14: 1060-1067.
    • (2004) Genome Res , vol.14 , pp. 1060-1067
    • Williums, E.J.B.1    Bowles, D.J.2
  • 37
    • 18844425962 scopus 로고    scopus 로고
    • Identification and characterization of regions of the rice genome associated with broad-spectrum, quantitative disease resistance
    • Wisser JR, Sun Q, Hulbert SH, Kresovich S, Nelson RJ (2005) Identification and characterization of regions of the rice genome associated with broad-spectrum, quantitative disease resistance. Genetics 169: 2277-2293.
    • (2005) Genetics , vol.169 , pp. 2277-2293
    • Wisser, J.R.1    Sun, Q.2    Hulbert, S.H.3    Kresovich, S.4    Nelson, R.J.5
  • 38
    • 44149107292 scopus 로고    scopus 로고
    • Molecular characterization and temporal expression analyses indicate that the MIC (Meloidogyne-induced cotton) gene family represents a novel group of root-specific defense-related genes in upland cotton (Gossypium hirsutum L.)
    • Wubben MJ, Callahan FE, Hayes RW, Jenkins JN (2008) Molecular characterization and temporal expression analyses indicate that the MIC (Meloidogyne-induced cotton) gene family represents a novel group of root-specific defense-related genes in upland cotton (Gossypium hirsutum L.). Planta 228: 111-123.
    • (2008) Planta , vol.228 , pp. 111-123
    • Wubben, M.J.1    Callahan, F.E.2    Hayes, R.W.3    Jenkins, J.N.4
  • 39
    • 33747037492 scopus 로고    scopus 로고
    • Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton
    • Yang SS, Cheung F, Lee JJ, Ha M, Wei NE, Sze SH, Stelly DM, Thaxton P, Triplett B, Town CD, Chen JZ (2006) Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton. Plant J 47: 761-775.
    • (2006) Plant J , vol.47 , pp. 761-775
    • Yang, S.S.1    Cheung, F.2    Lee, J.J.3    Ha, M.4    Wei, N.E.5    Sze, S.H.6    Stelly, D.M.7    Thaxton, P.8    Triplett, B.9    Town, C.D.10    Chen, J.Z.11
  • 40
    • 0003555872 scopus 로고
    • Resistant germplasm in Gossypium species and related plants to Rotylenchulus reniformis
    • Yik CP, Birchfield W (1984) Resistant germplasm in Gossypium species and related plants to Rotylenchulus reniformis. J Nematol 16: 146-153.
    • (1984) J Nematol , vol.16 , pp. 146-153
    • Yik, C.P.1    Birchfield, W.2
  • 41
    • 33845610187 scopus 로고    scopus 로고
    • Association of root-knot nematode resistance genes with simple sequence repeat markers on two chromosomes in cotton
    • Ynturi P, Jenkins JN, McCarty JC, Gutierrez OA, Saha S (2006) Association of root-knot nematode resistance genes with simple sequence repeat markers on two chromosomes in cotton. Crop Sci 46: 2670-2674.
    • (2006) Crop Sci , vol.46 , pp. 2670-2674
    • Ynturi, P.1    Jenkins, J.N.2    McCarty, J.C.3    Gutierrez, O.A.4    Saha, S.5
  • 42
    • 21144459818 scopus 로고
    • Characterization of anionic peroxidases in tomato isolines infected by Meloidogyne incognita
    • Zacheo G, Orlando C, Bleve-Zacheo T (1993) Characterization of anionic peroxidases in tomato isolines infected by Meloidogyne incognita. J Nematol 25: 249-256.
    • (1993) J Nematol , vol.25 , pp. 249-256
    • Zacheo, G.1    Orlando, C.2    Bleve-Zacheo, T.3
  • 43
    • 0037036083 scopus 로고    scopus 로고
    • A novel root-specific gene, MIC-3 with increased expression in nematode-resistant cotton (Gossypium hirsutum L.) after root-knot nematode infection
    • Zhang XD, Callahan FE, Jenkins JN, Ma D-P, Karaca M, Saha S, Creech RG (2002) A novel root-specific gene, MIC-3 with increased expression in nematode-resistant cotton (Gossypium hirsutum L.) after root-knot nematode infection. Biochim Biophys Acta 1576: 214-218.
    • (2002) Biochim Biophys Acta , vol.1576 , pp. 214-218
    • Zhang, X.D.1    Callahan, F.E.2    Jenkins, J.N.3    Ma, D.-P.4    Karaca, M.5    Saha, S.6    Creech, R.G.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.