메뉴 건너뛰기




Volumn 106, Issue 50, 2009, Pages 21323-21328

A two-subunit bacterial σ-factor activates transcription in Bacillus subtilis

Author keywords

Initiation; Open complex; Promoter; RNA polymerase

Indexed keywords

CORE BINDING FACTOR; DNA; ELEMENT; RNA POLYMERASE; SIGMA FACTOR;

EID: 75849150494     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0910006106     Document Type: Article
Times cited : (15)

References (39)
  • 1
    • 0035075383 scopus 로고    scopus 로고
    • How sigma docks to RNA polymerase and what sigma does
    • Burgess RR, Anthony L (2001) How sigma docks to RNA polymerase and what sigma does. Curr Opin Microbiol 4:126-131.
    • (2001) Curr Opin Microbiol , vol.4 , pp. 126-131
    • Burgess, R.R.1    Anthony, L.2
  • 2
    • 0023918675 scopus 로고
    • Structure and function of bacterial sigma factors
    • Helmann JD, Chamberlin MJ (1988) Structure and function of bacterial sigma factors. Annu Rev Biochem 57:839-872.
    • (1988) Annu Rev Biochem , vol.57 , pp. 839-872
    • Helmann, J.D.1    Chamberlin, M.J.2
  • 3
    • 0022253253 scopus 로고
    • Two functional domains conserved in major and alternate bacterial sigma factors
    • Stragier P, Parsot C, Bouvier J (1985) Two functional domains conserved in major and alternate bacterial sigma factors. FEBS Lett 187:11-15.
    • (1985) FEBS Lett , vol.187 , pp. 11-15
    • Stragier, P.1    Parsot, C.2    Bouvier, J.3
  • 4
    • 0026612797 scopus 로고
    • The sigma 70 family: Sequence conservation and evolutionary relationships
    • Lonetto M, Gribskov M, Gross CA (1992) The sigma 70 family: Sequence conservation and evolutionary relationships. J Bacteriol 174:3843-3849.
    • (1992) J Bacteriol , vol.174 , pp. 3843-3849
    • Lonetto, M.1    Gribskov, M.2    Gross, C.A.3
  • 5
    • 0023057529 scopus 로고    scopus 로고
    • Gribskov M, Burgess RR (1986) Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins. Nucleic Acids Res 14:6745-6763.
    • Gribskov M, Burgess RR (1986) Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins. Nucleic Acids Res 14:6745-6763.
  • 6
    • 0024371540 scopus 로고
    • Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase
    • Siegele DA, Hu JC, Walter WA, Gross CA (1989) Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase. J Mol Biol 206:591-603.
    • (1989) J Mol Biol , vol.206 , pp. 591-603
    • Siegele, D.A.1    Hu, J.C.2    Walter, W.A.3    Gross, C.A.4
  • 7
    • 0036203066 scopus 로고    scopus 로고
    • Structure of the bacterial RNA polymerase promoter specificity sigma subunit
    • Campbell EA, et al. (2002) Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 9:527-539.
    • (2002) Mol Cell , vol.9 , pp. 527-539
    • Campbell, E.A.1
  • 8
    • 0032553125 scopus 로고    scopus 로고
    • Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit
    • Arthur TM, Burgess RR (1998) Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit. J Biol Chem 273:31381-31387.
    • (1998) J Biol Chem , vol.273 , pp. 31381-31387
    • Arthur, T.M.1    Burgess, R.R.2
  • 9
    • 0029060496 scopus 로고
    • A single amino acid substitution in sigma E affects its ability to bind core RNA polymerase
    • Shuler MF, Tatti KM, Wade KH, Moran CP, Jr. (1995) A single amino acid substitution in sigma E affects its ability to bind core RNA polymerase. J Bacteriol 177:3687-3694.
    • (1995) J Bacteriol , vol.177 , pp. 3687-3694
    • Shuler, M.F.1    Tatti, K.M.2    Wade, K.H.3    Moran Jr., C.P.4
  • 10
    • 0031885524 scopus 로고    scopus 로고
    • Multiple regions on the Escherichia coli heat shock transcription factor sigma32 determine core RNA polymerase binding specificity
    • Joo DM, Nolte A, Calendar R, Zhou YN, Jin DJ (1998) Multiple regions on the Escherichia coli heat shock transcription factor sigma32 determine core RNA polymerase binding specificity. J Bacteriol 180:1095-1102.
    • (1998) J Bacteriol , vol.180 , pp. 1095-1102
    • Joo, D.M.1    Nolte, A.2    Calendar, R.3    Zhou, Y.N.4    Jin, D.J.5
  • 11
    • 0024974082 scopus 로고
    • Characterization of the Escherichia coli transcription factor sigma 70: Localization of a region involved in the interaction with core RNA polymerase
    • Lesley SA, Burgess RR (1989) Characterization of the Escherichia coli transcription factor sigma 70: Localization of a region involved in the interaction with core RNA polymerase. Biochemistry 28:7728-7734.
    • (1989) Biochemistry , vol.28 , pp. 7728-7734
    • Lesley, S.A.1    Burgess, R.R.2
  • 12
    • 0034725649 scopus 로고    scopus 로고
    • Mutational analysis of beta ′260-309, a sigma 70 binding site located on Escherichia coli core RNA polymerase
    • Arthur TM, Anthony LC, Burgess RR (2000) Mutational analysis of beta ′260-309, a sigma 70 binding site located on Escherichia coli core RNA polymerase. J Biol Chem 275:23113-23119.
    • (2000) J Biol Chem , vol.275 , pp. 23113-23119
    • Arthur, T.M.1    Anthony, L.C.2    Burgess, R.R.3
  • 13
    • 0032735991 scopus 로고    scopus 로고
    • The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized
    • Sharp MM, et al. (1999) The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized. Genes Dev 13:3015-3026.
    • (1999) Genes Dev , vol.13 , pp. 3015-3026
    • Sharp, M.M.1
  • 14
    • 33644747718 scopus 로고    scopus 로고
    • Mutational analysis of an extracytoplasmic-function sigma factor to investigate its interactions with RNA polymerase and DNA
    • Wilson MJ, Lamont IL (2006) Mutational analysis of an extracytoplasmic-function sigma factor to investigate its interactions with RNA polymerase and DNA. J Bacteriol 188:1935-1942.
    • (2006) J Bacteriol , vol.188 , pp. 1935-1942
    • Wilson, M.J.1    Lamont, I.L.2
  • 15
    • 0037470046 scopus 로고    scopus 로고
    • Mutational and functional analysis of a segment of the sigma family bacteriophage T4 late promoter recognition protein gp55
    • Wong K, Kassavetis GA, Leonetti JP, Geiduschek EP (2003) Mutational and functional analysis of a segment of the sigma family bacteriophage T4 late promoter recognition protein gp55. J Biol Chem 278:7073-7080.
    • (2003) J Biol Chem , vol.278 , pp. 7073-7080
    • Wong, K.1    Kassavetis, G.A.2    Leonetti, J.P.3    Geiduschek, E.P.4
  • 16
    • 17944375388 scopus 로고    scopus 로고
    • Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process
    • Gruber TM, et al. (2001) Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process. Mol Cell 8:21-31.
    • (2001) Mol Cell , vol.8 , pp. 21-31
    • Gruber, T.M.1
  • 17
    • 1442281182 scopus 로고    scopus 로고
    • Minimal machinery of RNA polymerase holoenzyme sufficient for promoter melting
    • Young BA, Gruber TM, Gross CA (2004) Minimal machinery of RNA polymerase holoenzyme sufficient for promoter melting. Science 303:1382-1384.
    • (2004) Science , vol.303 , pp. 1382-1384
    • Young, B.A.1    Gruber, T.M.2    Gross, C.A.3
  • 18
    • 0028333908 scopus 로고
    • A promoter melting region in the primary sigma factor of Bacillus subtilis. Identification of functionally important aromatic amino acids
    • Juang YL, Helmann JD (1994) A promoter melting region in the primary sigma factor of Bacillus subtilis. Identification of functionally important aromatic amino acids.J Mol Biol 235:1470-1488.
    • (1994) J Mol Biol , vol.235 , pp. 1470-1488
    • Juang, Y.L.1    Helmann, J.D.2
  • 19
    • 0029094575 scopus 로고
    • Open complex formation by Escherichia coli RNA polymerase: The mechanism of polymerase-induced strand separation of double helical DNA
    • de Haseth PL, Helmann JD (1995) Open complex formation by Escherichia coli RNA polymerase: The mechanism of polymerase-induced strand separation of double helical DNA. Mol Microbiol 16:817-824.
    • (1995) Mol Microbiol , vol.16 , pp. 817-824
    • de Haseth, P.L.1    Helmann, J.D.2
  • 20
    • 0026599029 scopus 로고
    • Mutant sigma factor blocks transition between promoter binding and initiation of transcription
    • Jones CH, Moran CP, Jr. (1992) Mutant sigma factor blocks transition between promoter binding and initiation of transcription. Proc Natl Acad Sci USA 89:1958-1962.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 1958-1962
    • Jones, C.H.1    Moran Jr., C.P.2
  • 21
    • 4744373193 scopus 로고    scopus 로고
    • A hydrophobic patch on the flap-tip helix of E. coli RNA polymerase mediates sigma(70) region 4 function
    • Geszvain K, Gruber TM, Mooney RA, Gross CA, Landick R (2004) A hydrophobic patch on the flap-tip helix of E. coli RNA polymerase mediates sigma(70) region 4 function. J Mol Biol 343:569-587.
    • (2004) J Mol Biol , vol.343 , pp. 569-587
    • Geszvain, K.1    Gruber, T.M.2    Mooney, R.A.3    Gross, C.A.4    Landick, R.5
  • 22
    • 0036469062 scopus 로고    scopus 로고
    • A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition
    • Kuznedelov K, et al. (2002) A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition. Science 295:855-857.
    • (2002) Science , vol.295 , pp. 855-857
    • Kuznedelov, K.1
  • 23
    • 0038354921 scopus 로고    scopus 로고
    • Region 4 of sigma as a target for transcription regulation
    • Dove SL, Darst SA, Hochschild A (2003) Region 4 of sigma as a target for transcription regulation. Mol Microbiol 48:863-874.
    • (2003) Mol Microbiol , vol.48 , pp. 863-874
    • Dove, S.L.1    Darst, S.A.2    Hochschild, A.3
  • 24
    • 47749087475 scopus 로고    scopus 로고
    • A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis
    • MacLellan SR, Wecke T, Helmann JD (2008) A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis. Mol Microbiol 69:954-967.
    • (2008) Mol Microbiol , vol.69 , pp. 954-967
    • MacLellan, S.R.1    Wecke, T.2    Helmann, J.D.3
  • 25
    • 65649154706 scopus 로고    scopus 로고
    • Genetic analysis of factors affecting susceptibility of Bacillus subtilis to daptomycin
    • Hachmann AB, Angert ER, Helmann JD (2009) Genetic analysis of factors affecting susceptibility of Bacillus subtilis to daptomycin. Antimicrob Agents Chemother 53:1598-1609.
    • (2009) Antimicrob Agents Chemother , vol.53 , pp. 1598-1609
    • Hachmann, A.B.1    Angert, E.R.2    Helmann, J.D.3
  • 26
    • 63449121369 scopus 로고    scopus 로고
    • The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis
    • MacLellan SR, Helmann JD, Antelmann H (2009) The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis. J Bacteriol 191:931-939.
    • (2009) J Bacteriol , vol.191 , pp. 931-939
    • MacLellan, S.R.1    Helmann, J.D.2    Antelmann, H.3
  • 27
    • 33847373765 scopus 로고    scopus 로고
    • The phosphorus source phytate changes the composition of the cell wall proteome in Bacillus subtilis
    • Antelmann H, Towe S, Albrecht D, Hecker M (2007) The phosphorus source phytate changes the composition of the cell wall proteome in Bacillus subtilis. J Proteome Res 6:897-903.
    • (2007) J Proteome Res , vol.6 , pp. 897-903
    • Antelmann, H.1    Towe, S.2    Albrecht, D.3    Hecker, M.4
  • 28
    • 0035688875 scopus 로고    scopus 로고
    • Bacterial two-hybrid analysis of interactions between region 4of the sigma(70) subunit of RNApolymerase and the transcriptional regulators Rsd from Escherichia coli and AlgQ from Pseudomonas aeruginosa
    • Dove SL, Hochschild A (2001) Bacterial two-hybrid analysis of interactions between region 4of the sigma(70) subunit of RNApolymerase and the transcriptional regulators Rsd from Escherichia coli and AlgQ from Pseudomonas aeruginosa. J Bacteriol 183:6413-6421.
    • (2001) J Bacteriol , vol.183 , pp. 6413-6421
    • Dove, S.L.1    Hochschild, A.2
  • 29
    • 0015474583 scopus 로고
    • Specificity of sigma-dependent binding of RNA polymerase to DNA
    • Bautz EK, Bautz FA, Beck E (1972) Specificity of sigma-dependent binding of RNA polymerase to DNA. Mol Gen Genet 118:199-207.
    • (1972) Mol Gen Genet , vol.118 , pp. 199-207
    • Bautz, E.K.1    Bautz, F.A.2    Beck, E.3
  • 30
    • 0014991930 scopus 로고
    • The function of the -factor of Escherichia coli RNA polymerase in template site selection
    • Mueller K (1971) The function of the -factor of Escherichia coli RNA polymerase in template site selection. Mol Gen Genet 111:273-296.
    • (1971) Mol Gen Genet , vol.111 , pp. 273-296
    • Mueller, K.1
  • 31
    • 0024291372 scopus 로고
    • Multiple principal sigma factor homologs in eubacteria: Identification of the rpoD box
    • Tanaka K, Shiina T, Takahashi H (1988) Multiple principal sigma factor homologs in eubacteria: Identification of the "rpoD box." Science 242:1040-1042.
    • (1988) Science , vol.242 , pp. 1040-1042
    • Tanaka, K.1    Shiina, T.2    Takahashi, H.3
  • 32
    • 45449099933 scopus 로고    scopus 로고
    • Advances in bacterial promoter recognition and its control by factors that do not bind DNA
    • Haugen SP, Ross W, Gourse RL (2008) Advances in bacterial promoter recognition and its control by factors that do not bind DNA. Nat Rev Microbiol 6:507-519.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 507-519
    • Haugen, S.P.1    Ross, W.2    Gourse, R.L.3
  • 33
    • 0017119182 scopus 로고
    • Bacteriophage SP01 regulatory proteins directing late gene transcription in vitro
    • Tijan R, Pero J (1976) Bacteriophage SP01 regulatory proteins directing late gene transcription in vitro. Nature 262:753-757.
    • (1976) Nature , vol.262 , pp. 753-757
    • Tijan, R.1    Pero, J.2
  • 34
    • 0242693109 scopus 로고    scopus 로고
    • Bacteriophage-induced modifications of host RNA polymerase
    • Nechaev S, Severinov K (2003) Bacteriophage-induced modifications of host RNA polymerase. Annu Rev Microbiol 57:301-322.
    • (2003) Annu Rev Microbiol , vol.57 , pp. 301-322
    • Nechaev, S.1    Severinov, K.2
  • 35
    • 0020788167 scopus 로고
    • Initiation of transcription at phage T4 late promoters with purified RNA polymerase
    • Kassavetis GA, Elliott T, Rabussay DP, Geiduschek EP (1983) Initiation of transcription at phage T4 late promoters with purified RNA polymerase. Cell 33:887-897.
    • (1983) Cell , vol.33 , pp. 887-897
    • Kassavetis, G.A.1    Elliott, T.2    Rabussay, D.P.3    Geiduschek, E.P.4
  • 36
    • 10644220255 scopus 로고    scopus 로고
    • The bacteriophage T4 late-transcription coactivator gp33 binds the flap domain of Escherichia coli RNA polymerase
    • Nechaev S, Kamali-Moghaddam M, Andre E, Leonetti JP, Geiduschek EP (2004) The bacteriophage T4 late-transcription coactivator gp33 binds the flap domain of Escherichia coli RNA polymerase. Proc Natl Acad Sci USA 101:17365-17370.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 17365-17370
    • Nechaev, S.1    Kamali-Moghaddam, M.2    Andre, E.3    Leonetti, J.P.4    Geiduschek, E.P.5
  • 37
    • 32044436258 scopus 로고    scopus 로고
    • Structural basis for bacterial transcription-coupled DNA repair
    • Deaconescu AM, et al. (2006) Structural basis for bacterial transcription-coupled DNA repair. Cell 124:507-520.
    • (2006) Cell , vol.124 , pp. 507-520
    • Deaconescu, A.M.1
  • 38
    • 3242655757 scopus 로고    scopus 로고
    • A bacterial two-hybrid system based on transcription activation
    • Dove SL, Hochschild A (2004) A bacterial two-hybrid system based on transcription activation. Methods Mol Biol 261:231-246.
    • (2004) Methods Mol Biol , vol.261 , pp. 231-246
    • Dove, S.L.1    Hochschild, A.2
  • 39
    • 0026329840 scopus 로고
    • Footprinting protein-DNA complexes in vivo
    • Sasse-Dwight S, Gralla JD (1991) Footprinting protein-DNA complexes in vivo. Methods Enzymol 208:146-168.
    • (1991) Methods Enzymol , vol.208 , pp. 146-168
    • Sasse-Dwight, S.1    Gralla, J.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.