-
1
-
-
0035075383
-
How sigma docks to RNA polymerase and what sigma does
-
Burgess RR, Anthony L (2001) How sigma docks to RNA polymerase and what sigma does. Curr Opin Microbiol 4:126-131.
-
(2001)
Curr Opin Microbiol
, vol.4
, pp. 126-131
-
-
Burgess, R.R.1
Anthony, L.2
-
2
-
-
0023918675
-
Structure and function of bacterial sigma factors
-
Helmann JD, Chamberlin MJ (1988) Structure and function of bacterial sigma factors. Annu Rev Biochem 57:839-872.
-
(1988)
Annu Rev Biochem
, vol.57
, pp. 839-872
-
-
Helmann, J.D.1
Chamberlin, M.J.2
-
3
-
-
0022253253
-
Two functional domains conserved in major and alternate bacterial sigma factors
-
Stragier P, Parsot C, Bouvier J (1985) Two functional domains conserved in major and alternate bacterial sigma factors. FEBS Lett 187:11-15.
-
(1985)
FEBS Lett
, vol.187
, pp. 11-15
-
-
Stragier, P.1
Parsot, C.2
Bouvier, J.3
-
4
-
-
0026612797
-
The sigma 70 family: Sequence conservation and evolutionary relationships
-
Lonetto M, Gribskov M, Gross CA (1992) The sigma 70 family: Sequence conservation and evolutionary relationships. J Bacteriol 174:3843-3849.
-
(1992)
J Bacteriol
, vol.174
, pp. 3843-3849
-
-
Lonetto, M.1
Gribskov, M.2
Gross, C.A.3
-
5
-
-
0023057529
-
-
Gribskov M, Burgess RR (1986) Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins. Nucleic Acids Res 14:6745-6763.
-
Gribskov M, Burgess RR (1986) Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins. Nucleic Acids Res 14:6745-6763.
-
-
-
-
6
-
-
0024371540
-
Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase
-
Siegele DA, Hu JC, Walter WA, Gross CA (1989) Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase. J Mol Biol 206:591-603.
-
(1989)
J Mol Biol
, vol.206
, pp. 591-603
-
-
Siegele, D.A.1
Hu, J.C.2
Walter, W.A.3
Gross, C.A.4
-
7
-
-
0036203066
-
Structure of the bacterial RNA polymerase promoter specificity sigma subunit
-
Campbell EA, et al. (2002) Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 9:527-539.
-
(2002)
Mol Cell
, vol.9
, pp. 527-539
-
-
Campbell, E.A.1
-
8
-
-
0032553125
-
Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit
-
Arthur TM, Burgess RR (1998) Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit. J Biol Chem 273:31381-31387.
-
(1998)
J Biol Chem
, vol.273
, pp. 31381-31387
-
-
Arthur, T.M.1
Burgess, R.R.2
-
9
-
-
0029060496
-
A single amino acid substitution in sigma E affects its ability to bind core RNA polymerase
-
Shuler MF, Tatti KM, Wade KH, Moran CP, Jr. (1995) A single amino acid substitution in sigma E affects its ability to bind core RNA polymerase. J Bacteriol 177:3687-3694.
-
(1995)
J Bacteriol
, vol.177
, pp. 3687-3694
-
-
Shuler, M.F.1
Tatti, K.M.2
Wade, K.H.3
Moran Jr., C.P.4
-
10
-
-
0031885524
-
Multiple regions on the Escherichia coli heat shock transcription factor sigma32 determine core RNA polymerase binding specificity
-
Joo DM, Nolte A, Calendar R, Zhou YN, Jin DJ (1998) Multiple regions on the Escherichia coli heat shock transcription factor sigma32 determine core RNA polymerase binding specificity. J Bacteriol 180:1095-1102.
-
(1998)
J Bacteriol
, vol.180
, pp. 1095-1102
-
-
Joo, D.M.1
Nolte, A.2
Calendar, R.3
Zhou, Y.N.4
Jin, D.J.5
-
11
-
-
0024974082
-
Characterization of the Escherichia coli transcription factor sigma 70: Localization of a region involved in the interaction with core RNA polymerase
-
Lesley SA, Burgess RR (1989) Characterization of the Escherichia coli transcription factor sigma 70: Localization of a region involved in the interaction with core RNA polymerase. Biochemistry 28:7728-7734.
-
(1989)
Biochemistry
, vol.28
, pp. 7728-7734
-
-
Lesley, S.A.1
Burgess, R.R.2
-
12
-
-
0034725649
-
Mutational analysis of beta ′260-309, a sigma 70 binding site located on Escherichia coli core RNA polymerase
-
Arthur TM, Anthony LC, Burgess RR (2000) Mutational analysis of beta ′260-309, a sigma 70 binding site located on Escherichia coli core RNA polymerase. J Biol Chem 275:23113-23119.
-
(2000)
J Biol Chem
, vol.275
, pp. 23113-23119
-
-
Arthur, T.M.1
Anthony, L.C.2
Burgess, R.R.3
-
13
-
-
0032735991
-
The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized
-
Sharp MM, et al. (1999) The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized. Genes Dev 13:3015-3026.
-
(1999)
Genes Dev
, vol.13
, pp. 3015-3026
-
-
Sharp, M.M.1
-
14
-
-
33644747718
-
Mutational analysis of an extracytoplasmic-function sigma factor to investigate its interactions with RNA polymerase and DNA
-
Wilson MJ, Lamont IL (2006) Mutational analysis of an extracytoplasmic-function sigma factor to investigate its interactions with RNA polymerase and DNA. J Bacteriol 188:1935-1942.
-
(2006)
J Bacteriol
, vol.188
, pp. 1935-1942
-
-
Wilson, M.J.1
Lamont, I.L.2
-
15
-
-
0037470046
-
Mutational and functional analysis of a segment of the sigma family bacteriophage T4 late promoter recognition protein gp55
-
Wong K, Kassavetis GA, Leonetti JP, Geiduschek EP (2003) Mutational and functional analysis of a segment of the sigma family bacteriophage T4 late promoter recognition protein gp55. J Biol Chem 278:7073-7080.
-
(2003)
J Biol Chem
, vol.278
, pp. 7073-7080
-
-
Wong, K.1
Kassavetis, G.A.2
Leonetti, J.P.3
Geiduschek, E.P.4
-
16
-
-
17944375388
-
Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process
-
Gruber TM, et al. (2001) Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process. Mol Cell 8:21-31.
-
(2001)
Mol Cell
, vol.8
, pp. 21-31
-
-
Gruber, T.M.1
-
17
-
-
1442281182
-
Minimal machinery of RNA polymerase holoenzyme sufficient for promoter melting
-
Young BA, Gruber TM, Gross CA (2004) Minimal machinery of RNA polymerase holoenzyme sufficient for promoter melting. Science 303:1382-1384.
-
(2004)
Science
, vol.303
, pp. 1382-1384
-
-
Young, B.A.1
Gruber, T.M.2
Gross, C.A.3
-
18
-
-
0028333908
-
A promoter melting region in the primary sigma factor of Bacillus subtilis. Identification of functionally important aromatic amino acids
-
Juang YL, Helmann JD (1994) A promoter melting region in the primary sigma factor of Bacillus subtilis. Identification of functionally important aromatic amino acids.J Mol Biol 235:1470-1488.
-
(1994)
J Mol Biol
, vol.235
, pp. 1470-1488
-
-
Juang, Y.L.1
Helmann, J.D.2
-
19
-
-
0029094575
-
Open complex formation by Escherichia coli RNA polymerase: The mechanism of polymerase-induced strand separation of double helical DNA
-
de Haseth PL, Helmann JD (1995) Open complex formation by Escherichia coli RNA polymerase: The mechanism of polymerase-induced strand separation of double helical DNA. Mol Microbiol 16:817-824.
-
(1995)
Mol Microbiol
, vol.16
, pp. 817-824
-
-
de Haseth, P.L.1
Helmann, J.D.2
-
20
-
-
0026599029
-
Mutant sigma factor blocks transition between promoter binding and initiation of transcription
-
Jones CH, Moran CP, Jr. (1992) Mutant sigma factor blocks transition between promoter binding and initiation of transcription. Proc Natl Acad Sci USA 89:1958-1962.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 1958-1962
-
-
Jones, C.H.1
Moran Jr., C.P.2
-
21
-
-
4744373193
-
A hydrophobic patch on the flap-tip helix of E. coli RNA polymerase mediates sigma(70) region 4 function
-
Geszvain K, Gruber TM, Mooney RA, Gross CA, Landick R (2004) A hydrophobic patch on the flap-tip helix of E. coli RNA polymerase mediates sigma(70) region 4 function. J Mol Biol 343:569-587.
-
(2004)
J Mol Biol
, vol.343
, pp. 569-587
-
-
Geszvain, K.1
Gruber, T.M.2
Mooney, R.A.3
Gross, C.A.4
Landick, R.5
-
22
-
-
0036469062
-
A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition
-
Kuznedelov K, et al. (2002) A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition. Science 295:855-857.
-
(2002)
Science
, vol.295
, pp. 855-857
-
-
Kuznedelov, K.1
-
23
-
-
0038354921
-
Region 4 of sigma as a target for transcription regulation
-
Dove SL, Darst SA, Hochschild A (2003) Region 4 of sigma as a target for transcription regulation. Mol Microbiol 48:863-874.
-
(2003)
Mol Microbiol
, vol.48
, pp. 863-874
-
-
Dove, S.L.1
Darst, S.A.2
Hochschild, A.3
-
24
-
-
47749087475
-
A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis
-
MacLellan SR, Wecke T, Helmann JD (2008) A previously unidentified sigma factor and two accessory proteins regulate oxalate decarboxylase expression in Bacillus subtilis. Mol Microbiol 69:954-967.
-
(2008)
Mol Microbiol
, vol.69
, pp. 954-967
-
-
MacLellan, S.R.1
Wecke, T.2
Helmann, J.D.3
-
25
-
-
65649154706
-
Genetic analysis of factors affecting susceptibility of Bacillus subtilis to daptomycin
-
Hachmann AB, Angert ER, Helmann JD (2009) Genetic analysis of factors affecting susceptibility of Bacillus subtilis to daptomycin. Antimicrob Agents Chemother 53:1598-1609.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 1598-1609
-
-
Hachmann, A.B.1
Angert, E.R.2
Helmann, J.D.3
-
26
-
-
63449121369
-
The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis
-
MacLellan SR, Helmann JD, Antelmann H (2009) The YvrI alternative sigma factor is essential for acid stress induction of oxalate decarboxylase in Bacillus subtilis. J Bacteriol 191:931-939.
-
(2009)
J Bacteriol
, vol.191
, pp. 931-939
-
-
MacLellan, S.R.1
Helmann, J.D.2
Antelmann, H.3
-
27
-
-
33847373765
-
The phosphorus source phytate changes the composition of the cell wall proteome in Bacillus subtilis
-
Antelmann H, Towe S, Albrecht D, Hecker M (2007) The phosphorus source phytate changes the composition of the cell wall proteome in Bacillus subtilis. J Proteome Res 6:897-903.
-
(2007)
J Proteome Res
, vol.6
, pp. 897-903
-
-
Antelmann, H.1
Towe, S.2
Albrecht, D.3
Hecker, M.4
-
28
-
-
0035688875
-
Bacterial two-hybrid analysis of interactions between region 4of the sigma(70) subunit of RNApolymerase and the transcriptional regulators Rsd from Escherichia coli and AlgQ from Pseudomonas aeruginosa
-
Dove SL, Hochschild A (2001) Bacterial two-hybrid analysis of interactions between region 4of the sigma(70) subunit of RNApolymerase and the transcriptional regulators Rsd from Escherichia coli and AlgQ from Pseudomonas aeruginosa. J Bacteriol 183:6413-6421.
-
(2001)
J Bacteriol
, vol.183
, pp. 6413-6421
-
-
Dove, S.L.1
Hochschild, A.2
-
29
-
-
0015474583
-
Specificity of sigma-dependent binding of RNA polymerase to DNA
-
Bautz EK, Bautz FA, Beck E (1972) Specificity of sigma-dependent binding of RNA polymerase to DNA. Mol Gen Genet 118:199-207.
-
(1972)
Mol Gen Genet
, vol.118
, pp. 199-207
-
-
Bautz, E.K.1
Bautz, F.A.2
Beck, E.3
-
30
-
-
0014991930
-
The function of the -factor of Escherichia coli RNA polymerase in template site selection
-
Mueller K (1971) The function of the -factor of Escherichia coli RNA polymerase in template site selection. Mol Gen Genet 111:273-296.
-
(1971)
Mol Gen Genet
, vol.111
, pp. 273-296
-
-
Mueller, K.1
-
31
-
-
0024291372
-
Multiple principal sigma factor homologs in eubacteria: Identification of the rpoD box
-
Tanaka K, Shiina T, Takahashi H (1988) Multiple principal sigma factor homologs in eubacteria: Identification of the "rpoD box." Science 242:1040-1042.
-
(1988)
Science
, vol.242
, pp. 1040-1042
-
-
Tanaka, K.1
Shiina, T.2
Takahashi, H.3
-
32
-
-
45449099933
-
Advances in bacterial promoter recognition and its control by factors that do not bind DNA
-
Haugen SP, Ross W, Gourse RL (2008) Advances in bacterial promoter recognition and its control by factors that do not bind DNA. Nat Rev Microbiol 6:507-519.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 507-519
-
-
Haugen, S.P.1
Ross, W.2
Gourse, R.L.3
-
33
-
-
0017119182
-
Bacteriophage SP01 regulatory proteins directing late gene transcription in vitro
-
Tijan R, Pero J (1976) Bacteriophage SP01 regulatory proteins directing late gene transcription in vitro. Nature 262:753-757.
-
(1976)
Nature
, vol.262
, pp. 753-757
-
-
Tijan, R.1
Pero, J.2
-
34
-
-
0242693109
-
Bacteriophage-induced modifications of host RNA polymerase
-
Nechaev S, Severinov K (2003) Bacteriophage-induced modifications of host RNA polymerase. Annu Rev Microbiol 57:301-322.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 301-322
-
-
Nechaev, S.1
Severinov, K.2
-
35
-
-
0020788167
-
Initiation of transcription at phage T4 late promoters with purified RNA polymerase
-
Kassavetis GA, Elliott T, Rabussay DP, Geiduschek EP (1983) Initiation of transcription at phage T4 late promoters with purified RNA polymerase. Cell 33:887-897.
-
(1983)
Cell
, vol.33
, pp. 887-897
-
-
Kassavetis, G.A.1
Elliott, T.2
Rabussay, D.P.3
Geiduschek, E.P.4
-
36
-
-
10644220255
-
The bacteriophage T4 late-transcription coactivator gp33 binds the flap domain of Escherichia coli RNA polymerase
-
Nechaev S, Kamali-Moghaddam M, Andre E, Leonetti JP, Geiduschek EP (2004) The bacteriophage T4 late-transcription coactivator gp33 binds the flap domain of Escherichia coli RNA polymerase. Proc Natl Acad Sci USA 101:17365-17370.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 17365-17370
-
-
Nechaev, S.1
Kamali-Moghaddam, M.2
Andre, E.3
Leonetti, J.P.4
Geiduschek, E.P.5
-
37
-
-
32044436258
-
Structural basis for bacterial transcription-coupled DNA repair
-
Deaconescu AM, et al. (2006) Structural basis for bacterial transcription-coupled DNA repair. Cell 124:507-520.
-
(2006)
Cell
, vol.124
, pp. 507-520
-
-
Deaconescu, A.M.1
-
38
-
-
3242655757
-
A bacterial two-hybrid system based on transcription activation
-
Dove SL, Hochschild A (2004) A bacterial two-hybrid system based on transcription activation. Methods Mol Biol 261:231-246.
-
(2004)
Methods Mol Biol
, vol.261
, pp. 231-246
-
-
Dove, S.L.1
Hochschild, A.2
-
39
-
-
0026329840
-
Footprinting protein-DNA complexes in vivo
-
Sasse-Dwight S, Gralla JD (1991) Footprinting protein-DNA complexes in vivo. Methods Enzymol 208:146-168.
-
(1991)
Methods Enzymol
, vol.208
, pp. 146-168
-
-
Sasse-Dwight, S.1
Gralla, J.D.2
|