-
1
-
-
70350521215
-
Metabolic engineering of Saccharomyces cerevisiae for production of carboxylic acids: Current status and challenges
-
Abbott, D. A., R. M. Zelle, J. T. Pronk, and A. J. van Maris. 2009. Metabolic engineering of Saccharomyces cerevisiae for production of carboxylic acids: current status and challenges. FEMS Yeast Res. 9:1123-1136.
-
(2009)
FEMS Yeast Res.
, vol.9
, pp. 1123-1136
-
-
Abbott, D.A.1
Zelle, R.M.2
Pronk, J.T.3
Van Maris, A.J.4
-
2
-
-
0021024592
-
Improvement of growth yield of yeast on glucose to the maximum by using an additional energy source
-
Babel, W., R. H. Muller, and K. D. Markuske. 1983. Improvement of growth yield of yeast on glucose to the maximum by using an additional energy source. Arch. Microbiol. 136:203-208.
-
(1983)
Arch. Microbiol.
, vol.136
, pp. 203-208
-
-
Babel, W.1
Muller, R.H.2
Markuske, K.D.3
-
3
-
-
0035170286
-
Stoichiometry and compartmentation of NADH metabolism in Saccharomyces cerevisiae
-
Bakker, B. M., K. M. Overkamp, A. J. van Maris, P. Kotter, M. A. Luttik, J. P. Van Dijken, and J. T. Pronk. 2001. Stoichiometry and compartmentation of NADH metabolism in Saccharomyces cerevisiae. FEMS Microbiol. Rev. 25:15-37.
-
(2001)
FEMS Microbiol. Rev.
, vol.25
, pp. 15-37
-
-
Bakker, B.M.1
Overkamp, K.M.2
Van Maris, A.J.3
Kotter, P.4
Luttik, M.A.5
Van Dijken, J.P.6
Pronk, J.T.7
-
4
-
-
0021822522
-
Utilization of formate as an additional energy source by glucose-limited chemostat cultures of Candida utilis CBS 621 and Saccharomyces cerevisiae CBS 8066
-
Bruinenberg, P. M., R. Jonker, J. P. van Dijken, and W. A. Scheffers. 1985. Utilization of formate as an additional energy source by glucose-limited chemostat cultures of Candida utilis CBS 621 and Saccharomyces cerevisiae CBS 8066. Arch. Microbiol. 142:302-306.
-
(1985)
Arch. Microbiol
, vol.142
, pp. 302-306
-
-
Bruinenberg, P.M.1
Jonker, R.2
Van Dijken, J.P.3
Scheffers, W.A.4
-
5
-
-
0020626034
-
An enzymic analysis of NADPH production and consumption, in Candida utilis
-
Bruinenberg, P. M., J. P. Van Dijken, and W. A. Scheffers. 1983. An enzymic analysis of NADPH production and consumption, in Candida utilis. J. Gen. Microbiol. 129:965-971.
-
(1983)
J. Gen. Microbiol.
, vol.129
, pp. 965-971
-
-
Bruinenberg, P.M.1
Van Dijken, J.P.2
Scheffers, W.A.3
-
6
-
-
13544262322
-
Competition of electrons to enter the respiratory chain: A new regulatory mechanism of oxidative metabolism in Saccharomyces cerevisiae
-
Bunoust, O., A. Devin, N. Averet, N. Camougrand, and M. Rigoulet. 2005. Competition of electrons to enter the respiratory chain: a new regulatory mechanism of oxidative metabolism in Saccharomyces cerevisiae. J. Biol. Chem. 280:3407-3413.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 3407-3413
-
-
Bunoust, O.1
Devin, A.2
Averet, N.3
Camougrand, N.4
Rigoulet, M.5
-
7
-
-
53749088357
-
Transport of carboxylic acids in yeasts
-
Casal, M., S. Paiva, O. Queiros, and I. Soares-Silva. 2008. Transport of carboxylic acids in yeasts. FEMS Microbiol. Rev. 32:974-994.
-
(2008)
FEMS Microbiol. Rev.
, vol.32
, pp. 974-994
-
-
Casal, M.1
Paiva, S.2
Queiros, O.3
Soares-Silva, I.4
-
8
-
-
0023561970
-
The mitochondrial respiratory chain of yeast
-
Structure and biosynthesis and the role in cellular metabolism.
-
de Vries, S., and C. A. Marres. 1987. The mitochondrial respiratory chain of yeast. Structure and biosynthesis and the role in cellular metabolism. Biochim. Biophys. Acta 895:205-239.
-
(1987)
Biochim. Biophys. Acta
, vol.895
, pp. 205-239
-
-
De Vries, S.1
Marres, C.A.2
-
9
-
-
62349109887
-
MitoP2: An integrative tool for the analysis of the mitochondrial proteome
-
Elstner, M., C. Andreoli, U. Ahting, I. Tetko, T. Klopstock, T. Meitinger, and H. Prokisch. 2008. MitoP2: an integrative tool for the analysis of the mitochondrial proteome. Mol. Biotechnol. 40:306-315.
-
(2008)
Mol. Biotechnol
, vol.40
, pp. 306-315
-
-
Elstner, M.1
Andreoli, C.2
Ahting, U.3
Tetko, I.4
Klopstock, T.5
Meitinger, T.6
Prokisch, H.7
-
10
-
-
34248531753
-
Locating proteins in the cell using target P, signal P and related tools
-
Emanuelsson, O., S. Brunak, G. von Heijne, and H. Nielsen. 2007. Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2:953-971.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
11
-
-
33751279921
-
Engineering NADH metabolism in Saccharomyces cerevisiae: Formate as an electron donor for glycerol production by anaerobic, glucose-limited chemostat cultures
-
Geertman, J. M., J. P. Van Dijken, and J. T. Pronk. 2006. Engineering NADH metabolism in Saccharomyces cerevisiae: formate as an electron donor for glycerol production by anaerobic, glucose-limited chemostat cultures. FEMS Yeast Res. 6:1193-1203.
-
(2006)
FEMS Yeast Res.
, vol.6
, pp. 1193-1203
-
-
Geertman, J.M.1
Van Dijken, J.P.2
Pronk, J.T.3
-
12
-
-
0035140099
-
Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression
-
Gombert, A. K., M. Moreira dos Santos, B. Christensen, and J. Nielsen. 2001. Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression. J. Bacteriol. 183:1441-1451..
-
(2001)
J. Bacteriol.
, vol.183
, pp. 1441-1451
-
-
Gombert, A.K.1
Moreira Dos Santos, M.2
Christensen, B.3
Nielsen, J.4
-
13
-
-
75749134466
-
Elimination of glycerol production in anaerobic cultures of a Saccharomyces cerevisiae strain engineered to use acetic acid as an electron acceptor
-
Guadalupe Medina, V., M. J. H. Almering, A. J. A. van Maris, and J. T. Pronk. 2010. Elimination of glycerol production in anaerobic cultures of a Saccharomyces cerevisiae strain engineered to use acetic acid as an electron acceptor. Appl. Environ. Microbiol. 76:190-195.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 190-195
-
-
Guadalupe Medina, V.1
Almering, M.J.H.2
Van Maris, A.J.A.3
Pronk, J.T.4
-
14
-
-
33746891860
-
Cofactor engineering in Saccharomyces cerevisiae: Expression of a H2O-forming NADH oxidase and impact on redox metabolism
-
Heux, S., R. Cachon, and S. Dequin. 2006. Cofactor engineering in Saccharomyces cerevisiae: expression of a H2O-forming NADH oxidase and impact on redox metabolism. Metab. Eng. 8:303-314.
-
(2006)
Metab. Eng.
, vol.8
, pp. 303-314
-
-
Heux, S.1
Cachon, R.2
Dequin, S.3
-
15
-
-
68049137324
-
Metabolic impact of redox cofactor perturbations in saccharomyces cerevisiae
-
Hou, J., N. F. Lages, M. Oldiges, and G. N. Vemuri. 2009. Metabolic impact of redox cofactor perturbations in Saccharomyces cerevisiae. Metab. Eng. 11:253-261.
-
(2009)
Metab. Eng.
, vol.11
, pp. 253-261
-
-
Hou, J.1
Lages, N.F.2
Oldiges, M.3
Vemuri, G.N.4
-
16
-
-
75749088325
-
Using regulatory information to manipulate glycerol metabolism in Saccharomyces cerevisiae
-
Hou, J., and G. N. Vemuri. 2010. Using regulatory information to manipulate glycerol metabolism in Saccharomyces cerevisiae. Appl. Microbiol. Biotechnol. 85:1123-1130.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.85
, pp. 1123-1130
-
-
Hou, J.1
Vemuri, G.N.2
-
17
-
-
31844436264
-
Yeast ABC transporters - A tale of sex, stress, drugs and aging
-
DOI 10.1016/j.febslet.2005.12.050, PII S0014579305015334, ABC Transporters
-
Jungwirth, H., and K. Kuchler. 2006. Yeast ABC transporters-a tale of sex, stress, drugs and aging. FEBS Lett. 580:1131-1138. (Pubitemid 43185293)
-
(2006)
FEBS Letters
, vol.580
, Issue.4
, pp. 1131-1138
-
-
Jungwirth, H.1
Kuchler, K.2
-
18
-
-
15644371838
-
The role of yeast VDAC genes on the permeability of the mitochondrial outer membrane
-
Lee, A. C, X. Xu, E. Blachly-Dyson, M. Forte, and M. Colombini. 1998. The role of yeast VDAC genes on the permeability of the mitochondrial outer membrane. J. Membr. Biol. 161:173-181.
-
(1998)
J. Membr. Biol.
, vol.161
, pp. 173-181
-
-
Lee, A.C.1
Xu, X.2
Blachly-Dyson, E.3
Forte, M.4
Colombini, M.5
-
19
-
-
0029861775
-
The role of pyridine dinucleotides in regulating the permeability of the mitochondrial outer membrane
-
Lee, A. C., X. Xu, and M. Colombini. 1996. The role of pyridine dinucleotides in regulating the permeability of the mitochondrial outer membrane. J. Biol. Chem. 271:26724-26731.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 26724-26731
-
-
Lee, A.C.1
Xu, X.2
Colombini, M.3
-
20
-
-
33947503169
-
Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry
-
DOI 10.1016/j.chroma.2007.02.034, PII S0021967307002907
-
Luo, B., K. Groenke, R. Takors, C. Wandrey, and M. Oldiges. 2007. Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry. J. Chromatogr. A 1147:153-164. (Pubitemid 46466829)
-
(2007)
Journal of Chromatography A
, vol.1147
, Issue.2
, pp. 153-164
-
-
Luo, B.1
Groenke, K.2
Takors, R.3
Wandrey, C.4
Oldiges, M.5
-
21
-
-
0032544505
-
The Saccharomyces cerevisiae NDE1 and NDE2 genes encode separate mitochondrial NADH dehydrogenases catalyzing the oxidation of cytosolic NADH
-
Luttik, M. A., K. M. Overkamp, P. Kotter, S. de Vries, J. P. van Dijken, and J. T. Pronk. 1998. The Saccharomyces cerevisiae NDE1 and NDE2 genes encode separate mitochondrial NADH dehydrogenases catalyzing the oxidation of cytosolic NADH. J. Biol. Chem. 273:24529-24534.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 24529-24534
-
-
Luttik, M.A.1
Overkamp, K.M.2
Kotter, P.3
De Vries, S.4
Van Dijken, J.P.5
Pronk, J.T.6
-
22
-
-
0026089901
-
Isolation and inactivation of the nuclear gene encoding the rotenone-insensitive internal NADH: Ubiquinone oxidoreductase of mitochondria from Saccharomyces cerevisiae
-
Marres, C. A., S. de Vries, and L. A. Grivell. 1991. Isolation and inactivation of the nuclear gene encoding the rotenone-insensitive internal NADH: ubiquinone oxidoreductase of mitochondria from Saccharomyces cerevisiae. Eur. J. Biochem. 195:857-862.
-
(1991)
Eur. J. Biochem.
, vol.195
, pp. 857-862
-
-
Marres, C.A.1
De Vries, S.2
Grivell, L.A.3
-
23
-
-
0022161592
-
Formate gradients as a means for detecting the maximum carbon conversion efficiency of heterotrophic substrates: Correlation between formate utilization, and biomass increase
-
Muller, R. H., K. D. Markuske, and W. Babel. 1985. Formate gradients as a means for detecting the maximum carbon conversion efficiency of heterotrophic substrates: correlation between formate utilization, and biomass increase. Biotechnol. Bioeng. 27:1599-1602.
-
(1985)
Biotechnol. Bioeng.
, vol.27
, pp. 1599-1602
-
-
Muller, R.H.1
Markuske, K.D.2
Babel, W.3
-
24
-
-
0032487751
-
A pH-controlled fed-batch process can overcome inhibition by formate in NADH-dependent enzymatic reductions using formate dehydrogenasecatalyzed coenzyme regeneration
-
Neuhauser, W., M. Steininger, D. Haltrich, K. D. Kulbe, and B. Nidetzky . 1998. A pH-controlled fed-batch process can overcome inhibition by formate in NADH-dependent enzymatic reductions using formate dehydrogenasecatalyzed coenzyme regeneration. Biotechnol. Bioeng. 60:277-282.
-
(1998)
Biotechnol. Bioeng.
, vol.60
, pp. 277-282
-
-
Neuhauser, W.1
Steininger, M.2
Haltrich, D.3
Kulbe, K.D.4
Nidetzky, B.5
-
25
-
-
51949107835
-
Progress in metabolic engineering of saccharomyces cerevisiae
-
Nevoigt, E. 2008. Progress in metabolic engineering of Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 72:379-412.
-
(2008)
Microbiol. Mol. Biol. Rev.
, vol.72
, pp. 379-412
-
-
Nevoigt, E.1
-
26
-
-
41549116226
-
Anticipating antiport in P-type ATPases
-
Niggli, V., and E. Sigel. 2008. Anticipating antiport in P-type ATPases. Trends Biochem. Sci. 33:156-160.
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 156-160
-
-
Niggli, V.1
Sigel, E.2
-
27
-
-
0036230936
-
Functional analysis of structural genes for NAD+-dependent formate dehydrogenase in Saccharomyces cerevisiae
-
Overkamp, K. M., P. Kotter, R. van der Hoek, S. Schoondermark-Stolk, M. A. Luttik, J. P. Van Dijken, and J. T. Pronk. 2002. Functional analysis of structural genes for NAD+-dependent formate dehydrogenase in Saccharomyces cerevisiae. Yeast 19:509-520.
-
(2002)
Yeast
, vol.19
, pp. 509-520
-
-
Overkamp, K.M.1
Kotter, P.2
Van Der Hoek, R.3
Schoondermark-Stolk, S.4
Luttik, M.A.5
Van Dijken, J.P.6
Pronk, J.T.7
-
28
-
-
70449519261
-
Impact of yeast systems biology on industrial biotechnology
-
Petranovic, D., and G. N. Vemuri. 2009. Impact of yeast systems biology on industrial biotechnology. J. Biotechnol. 144:204-211.
-
(2009)
J. Biotechnol.
, vol.144
, pp. 204-211
-
-
Petranovic, D.1
Vemuri, G.N.2
-
29
-
-
0032479995
-
The Pdr12 ABC transporter is required for the development of weak organic acid resistance in yeast
-
DOI 10.1093/emboj/17.15.4257
-
Piper, P., Y. Mahe, S. Thompson, R. Pandjaitan, C. Holyoak, R. Egner, M. Muhlbauer, P. Coote, and K. Kuchler. 1998. The pdr12 ABC transporter is required for the development of weak organic acid resistance in yeast. EMBO J. 17:4257-4265. (Pubitemid 28362616)
-
(1998)
EMBO Journal
, vol.17
, Issue.15
, pp. 4257-4265
-
-
Piper, P.1
Mahe, Y.2
Thompson, S.3
Pandjaitan, R.4
Holyoak, C.5
Egner, R.6
Muhlbauer, M.7
Coote, P.8
Kuchler, K.9
-
30
-
-
0035824654
-
Mitochondrial and cytosolic isoforms of yeast fumarase are derivatives of a single translation product and have identical amino termini
-
Sass, E., E. Blachinsky, S. Karniely, and O. Pines. 2001. Mitochondrial and cytosolic isoforms of yeast fumarase are derivatives of a single translation product and have identical amino termini. J. Biol. Chem. 276:46111-46117.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 46111-46117
-
-
Sass, E.1
Blachinsky, E.2
Karniely, S.3
Pines, O.4
-
31
-
-
0742270637
-
Global phenotypic analysis and transcriptional profiling defines the weak acid stress response regulon in Saccharomyces cerevisiae
-
Schuller, C., Y. M. Mamnun, M. Mollapour, G. Krapf, M. Schuster, B. E. Bauer, P. W. Piper, and K. Kuchler. 2004. Global phenotypic analysis and transcriptional profiling defines the weak acid stress response regulon in Saccharomyces cerevisiae. Mol. Biol. Cell 15:706-720.
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 706-720
-
-
Schuller, C.1
Mamnun, Y.M.2
Mollapour, M.3
Krapf, G.4
Schuster, M.5
Bauer, B.E.6
Piper, P.W.7
Kuchler, K.8
-
32
-
-
0345687191
-
The proteome of Saccharomyces cerevisiae mitochondria
-
Sickmann, A., J. Reinders, Y. Wagner, C. Joppich, R. Zahedi, H. E. Meyer, B. Schonfisch, I. Perschil, A. Chacinska, B. Guiard, P. Rehling, N. Pfuanner, and C. Meisinger. 2003. The proteome of Saccharomyces cerevisiae mitochondria. Proc. Natl. Acad. Sci. U. S. A. 100:13207-13212.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 13207-13212
-
-
Sickmann, A.1
Reinders, J.2
Wagner, Y.3
Joppich, C.4
Zahedi, R.5
Meyer, H.E.6
Schonfisch, B.7
Perschil, I.8
Chacinska, A.9
Guiard, B.10
Rehling, P.11
Pfuanner, N.12
Meisinger, C.13
-
33
-
-
0032528360
-
Cleanup and analysis of sugar phosphates in biological extracts by using solid-phase extraction and anion-exchange chromatography with pulsed amperometric detection
-
Smits, H. P., A. Cohen, T. Buttler, J. Nielsen, and L. Olsson. 1998. Cleanup and analysis of sugar phosphates in biological extracts by using solid-phase extraction and anion-exchange chromatography with pulsed amperometric detection. Anal. Biochem. 261:36-42.
-
(1998)
Anal. Biochem.
, vol.261
, pp. 36-42
-
-
Smits, H.P.1
Cohen, A.2
Buttler, T.3
Nielsen, J.4
Olsson, L.5
-
34
-
-
0034214335
-
An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains
-
Van Dijken, J. P., J. Bauer, L. Brambilla, P. Duboc, J. M. Francois, C. Gancedo, M. L. Giuseppin, J. J. Heijnen, M. Hoare, H. C. Lange, E. A. Madden, P. Niederberger, J. Nielsen, J. L. Parrou, T. Petit, D. Porro, M. Reuss, N. van Riel, M. Rizzi, H. Y. Steensma, C. T. Verrips, J. Vindelov, and J. T. Pronk. 2000. An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains. Enzyme Microb. Technol. 26:706-714.
-
(2000)
Enzyme Microb. Technol.
, vol.26
, pp. 706-714
-
-
Van Dijken, J.P.1
Bauer, J.2
Brambilla, L.3
Duboc, P.4
Francois, J.M.5
Gancedo, C.6
Giuseppin, M.L.7
Heijnen, J.J.8
Hoare, M.9
Lange, H.C.10
Madden, E.A.11
Niederberger, P.12
Nielsen, J.13
Parrou, J.L.14
Petit, T.15
Porro, D.16
Reuss, M.17
Van Riel, N.18
Rizzi, M.19
Steensma, H.Y.20
Verrips, C.T.21
Vindelov, J.22
Pronk, J.T.23
more..
-
35
-
-
0022507007
-
Redox balances in the metabolism of sugars by yeasts
-
Van Dijken, J. P., and W. A. Scheffers. 1986. Redox balances in the metabolism of sugars by yeasts. FEMS Microbiol. Rev. 32:199-224.
-
(1986)
FEMS Microbiol. Rev.
, vol.32
, pp. 199-224
-
-
Van Dijken, J.P.1
Scheffers, W.A.2
-
36
-
-
33847785682
-
Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae
-
Vemuri, G. N., M. A. Eiteman, J. E. McEwen, L. Olsson, and J. Nielsen. 2007. Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 104:2402-2407.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 2402-2407
-
-
Vemuri, G.N.1
Eiteman, M.A.2
McEwen, J.E.3
Olsson, L.4
Nielsen, J.5
-
38
-
-
0026710123
-
Effect of benzoic acid on metabolic fluxes in yeasts: A continuous-culture study on the regulation, of respiration and alcoholic fermentation
-
Verduyn, C., E. Postma, W. A. Scheffers, and J. P. Van Dijken. 1992. Effect of benzoic acid on metabolic fluxes in yeasts: a continuous-culture study on the regulation, of respiration and alcoholic fermentation. Yeast 8:501-517.
-
(1992)
Yeast
, vol.8
, pp. 501-517
-
-
Verduyn, C.1
Postma, E.2
Scheffers, W.A.3
Van Dijken, J.P.4
-
39
-
-
0014734642
-
Pathways of hydrogen in mitochondria of Saccharomyces carlsbergensis
-
von Jagow, G., and M. Klingenberg. 1970. Pathways of hydrogen in mitochondria of Saccharomyces carlsbergensis. Eur. J. Biochem. 12:583-592.
-
(1970)
Eur. J. Biochem.
, vol.12
, pp. 583-592
-
-
Von Jagow, G.1
Klingenberg, M.2
-
40
-
-
50249105159
-
Production of the polyketide 6-MSA in yeast engineered for increased malonyl-CoA supply
-
Wattanachaisaereekul, S., A. E. Lantz, M. L. Nielsen, and J. Nielsen. 2008. Production of the polyketide 6-MSA in yeast engineered for increased malonyl-CoA supply. Metab. Eng. 10:246-254.
-
(2008)
Metab. Eng.
, vol.10
, pp. 246-254
-
-
Wattanachaisaereekul, S.1
Lantz, A.E.2
Nielsen, M.L.3
Nielsen, J.4
|