Efficient and accurate simulations of two-dimensional electronic photon-echo signals: Illustration for a simple model of the Fenna-Matthews-Olson complex

Journal of Chemical Physics

Volumn 132, Issue 1, 2010, Pages

  Sharp, Leah Z ^a   Egorova, Dassia ^a   Domcke, Wolfgang ^a  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOCHLOROPHYLLS; COHERENT OSCILLATIONS; DEPHASING; ECHO SPECTRA; EXTENDED VERSIONS; FRENKEL EXCITON MODEL; MATERIAL SYSTEMS; MOTION PHASE; MULTIPLE FREQUENCY; PEAK INTENSITY; PHOTON-ECHO SIGNAL; POPULATION RELAXATION; PULSE DURATIONS; PULSE-OVERLAP EFFECTS; SECULAR APPROXIMATION; SIMPLE MODEL; SPECTROSCOPIC SIGNALS;

COHERENT LIGHT; EQUATIONS OF MOTION; PHOTONS; PNEUMATIC CONTROL EQUIPMENT; TWO DIMENSIONAL;

EXCITONS;

EID: 75749094776     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3268705     Document Type: Article

References (45)

1. R. Blankenship, Molecular Mechanisms of Photosynthesis (Blackwell Science, Oxford, 2002). 10.1002/9780470758472
2. T. Renger, V. May, and O. Kühn, Phys. Rep. PRPLCM 0370-1573 343, 137 (2001). 10.1016/S0370-1573(00)00078-8
3. H. van Amerongen, L. Valkunas, and R. van Grondelle, Photosynthetic Excitons (World Scientific, Singapore, 2000).
4. G. McDermott, S. M. Prince, A. A. Freer, A. M. Hawthornthwaite-Lawless, M. Z. Papiz, R. J. Cogdll, and N. W. Isaacs, Nature (London) NATUAS 0028-0836 374, 517 (1995). 10.1038/374517a0
5. J. Koepke, X. Hu, C. Muenke, K. Schulten, and H. Michel, Structure (London) STRUE6 0969-2126 4, 581 (1996). 10.1016/S0969-2126(96)00063-9
6. W. Kühlbrandt, D. N. Wang, and Y. Fujiyoshi, Nature (London) NATUAS 0028-0836 367, 614 (1994). 10.1038/367614a0 (Pubitemid 24067701)
7. R. E. Fenna and B. C. Matthews, Nature (London) NATUAS 0028-0836 258, 573 (1975). 10.1038/258573a0
8. S. G. Johnson and G. J. Small, Chem. Phys. Lett. CHPLBC 0009-2614 155, 371 (1989). 10.1016/0009-2614(89)87171-4
9. S. G. Johnson and G. J. Small, J. Phys. Chem. JPCHAX 0022-3654 95, 471 (1991). 10.1021/j100154a083
10. E. M. Franken, S. Neerken, R. J. W. Louwe, J. Amesz, and T. J. Aartsma, Biochemistry BICHAW 0006-2960 37, 5046 (1998). 10.1021/bi972264c (Pubitemid 28176505)
11. S. Savikhin and W. S. Struve, Biochemistry BICHAW 0006-2960 33, 11200 (1994). 10.1021/bi00203a016 (Pubitemid 24304284)
12. S. Savikhin and W. S. Struve, Photosynth. Res. PHRSDI 0166-8595 48, 271 (1996). 10.1007/BF00041018
13. V. Gulbinas, L. Valkunas, D. Kuciauskas, E. Katilius, V. Liuolia, W. Zhou, and R. E. Blankenship, J. Phys. Chem. JPCHAX 0022-3654 100, 17950 (1996). 10.1021/jp961272k
14. A. Freiberg, S. Lin, K. Timpmann, and R. E. Blankenship, J. Phys. Chem. B JPCBFK 1089-5647 101, 7211 (1997). 10.1021/jp9633761
15. S. I. E. Vulto, A. M. Streltsov, and T. J. Aartsma, J. Phys. Chem. B JPCBFK 1089-5647 101, 4845 (1997). 10.1021/jp964040u
16. S. I. E. Vulto, S. Neerken, R. J. W. Louwe, M. A. de Baat, J. Amesz, and T. J. Aartsma, J. Phys. Chem. B JPCBFK 1089-5647 102, 10630 (1998). 10.1021/jp983003v
17. S. Savikhin, D. R. Buck, and W. S. Struve, J. Phys. Chem. B JPCBFK 1089-5647 102, 5556 (1998). 10.1021/jp981186f
18. R. J. W. Louwe and T. J. Aartsma, J. Phys. Chem. B JPCBFK 1089-5647 101, 7221 (1997). 10.1021/jp963370b
19. G. S. Engel, T. R. Calhoun, E. L. Read, T. -K. Ahn, T. Mančal, Y. -C. Cheng, R. Blankenship, and G. R. Fleming, Nature (London) NATUAS 0028-0836 446, 782 (2007). 10.1038/nature05678 (Pubitemid 46582029)
20. T. Brixner, J. Stenger, H. M. Vaswani, M. Cho, R. E. Blankenship, and G. R. Fleming, Nature (London) NATUAS 0028-0836 434, 625 (2005). 10.1038/nature03429 (Pubitemid 40488551)
21. T. Renger and V. May, J. Phys. Chem. A JPCAFH 1089-5639 102, 4381 (1998). 10.1021/jp9800665
22. S. I. E. Vulto, M. A. de Baat, S. Neerken, F. K. Nowak, H. van Amerongen, J. Amesz, and T. J. Aartsma, J. Phys. Chem. B JPCBFK 1089-5647 103, 8153 (1999). 10.1021/jp984702a
23. M. Cho, H. M. Vaswani, T. Brixner, J. Stenger, and G. R. Fleming, J. Phys. Chem. B JPCBFK 1089-5647 109, 10542 (2005). 10.1021/jp050788d (Pubitemid 40844481)
24. Y. -C. Cheng, G. S. Engel, and G. R. Fleming, Chem. Phys. CMPHC2 0301-0104 341, 285 (2007). 10.1016/j.chemphys.2007.07.049
25. Y. -C. Cheng and G. R. Fleming, J. Phys. Chem. A JPCAFH 1089-5639 112, 4254 (2008). 10.1021/jp7107889 (Pubitemid 351704620)
26. D. Abramavicius, D. Voronine, and S. Mukamel, Biophys. J. BIOJAU 0006-3495 94, 3613 (2008). 10.1529/biophysj.107.123455
27. D. Voronine, D. Abramavicius, and S. Mukamel, Biophys. J. BIOJAU 0006-3495 95, 4896 (2008). 10.1529/biophysj.108.134387
28. M. F. Gelin, D. Egorova, and W. Domcke, J. Chem. Phys. JCPSA6 0021-9606 123, 164112 (2005). 10.1063/1.2062188 (Pubitemid 41527635)
29. D. Egorova, M. F. Gelin, and W. Domcke, J. Chem. Phys. JCPSA6 0021-9606 126, 074314 (2007). 10.1063/1.2435353 (Pubitemid 46303475)
30. M. F. Gelin, D. Egorova, and W. Domcke, Acc. Chem. Res. ACHRE4 0001-4842 42, 1290 (2009). 10.1021/ar900045d
31. A. Ishizaki and G. R. Fleming, J. Chem. Phys. JCPSA6 0021-9606 130, 234110 (2009). 10.1063/1.3155214
32. S. I. E. Vulto, M. A. de Baat, R. J. W. Louwe, H. P. Permentier, T. Neef, M. Miller, H. van Amerongen, J. Amesz, and T. J. Aartsma, J. Phys. Chem. B JPCBFK 1089-5647 102, 9577 (1998). 10.1021/jp982095l
33. J. Adolphs, T. Renger, and V. May, Biophys. J. BIOJAU 0006-3495 91, 2778 (2006). 10.1529/biophysj.105.079483 (Pubitemid 44526469)
34. F. Müh, M. E.-A. Madjet, J. Adolphs, A. Abdurahman, B. Rabenstein, H. Ishikita, E. -W. Knapp, and T. Renger, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 104, 16862 (2007). 10.1073/pnas.0708222104 (Pubitemid 350210956)
35. A. Ishizaki and G. R. Fleming, J. Chem. Phys. JCPSA6 0021-9606 130, 234111 (2009). 10.1063/1.3155372
36. T. Mančal, A. V. Pisliakov, and G. R. Fleming, J. Chem. Phys. JCPSA6 0021-9606 124, 234504 (2006). 10.1063/1.2200704 (Pubitemid 43938903)
37. S. Mukamel, Principles of Nonlinear Optical Spectroscopy (University, Oxford, 1995).
38. A. V. Pisliakov, T. Mančal, and G. R. Fleming, J. Chem. Phys. JCPSA6 0021-9606 124, 234505 (2006). 10.1063/1.2200705 (Pubitemid 43938904)
39. D. Egorova, Chem. Phys. CMPHC2 0301-0104 347, 166 (2008). 10.1016/j.chemphys.2007.12.019
40. P. Rebentrost, M. Mohseni, and A. Aspuru-Guzik, J. Phys. Chem. B JPCBFK 1089-5647 113, 9942 (2009). 10.1021/jp901724d
41. M. Lutz, A. J. Hoff, and L. Brehamet, Biochim. Biophys. Acta BBACAQ 0006-3002 679, 331 (1981).
42. J. R. Diers and D. F. Bocian, J. Am. Chem. Soc. JACSAT 0002-7863 117, 6629 (1995). 10.1021/ja00129a042
43. V. Zazubovich, I. Tibe, and G. J. Small, J. Phys. Chem. B JPCBFK 1089-5647 105, 12410 (2001). 10.1021/jp012804m (Pubitemid 35338343)
44. M. Rätsep and A. Freiberg, J. Lumin. JLUMA8 0022-2313 127, 251 (2007). 10.1016/j.jlumin.2007.02.053 (Pubitemid 46754053)
45. A. Nemeth, F. Milota, T. Mancal, V. Lukes, H. F. Kaufmann, and J. Sperling, Chem. Phys. Lett. CHPLBC 0009-2614 459, 94 (2008). 10.1016/j.cplett.2008.05.057