메뉴 건너뛰기




Volumn 38, Issue 1, 2009, Pages 26-38

Martini: Using literature keywords to compare gene sets

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; CELL CYCLE; CONTROLLED STUDY; DATA ANALYSIS; GENE FUNCTION; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC DATABASE; HUMAN; INTERMETHOD COMPARISON; MARTINI; MEDLINE; MELANOMA; NONHUMAN; OVARY CANCER; PRIORITY JOURNAL; QUALITY CONTROL; VALIDATION PROCESS;

EID: 75649097434     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp876     Document Type: Article
Times cited : (25)

References (32)
  • 1
    • 17244380380 scopus 로고    scopus 로고
    • A survey of current work in biomedical text mining
    • Cohen, A.M. and Hersh, W.R. (2005) A survey of current work in biomedical text mining. Brief Bioinform., 6, 57-71.
    • (2005) Brief Bioinform. , vol.6 , pp. 57-71
    • Cohen, A.M.1    Hersh, W.R.2
  • 4
  • 5
    • 34547561588 scopus 로고    scopus 로고
    • FatiGO+: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
    • Al-Shahrour, F., Minguez, P., Tarraga, J., Medina, I., Alloza, E., Montaner, D. and Dopazo, J. (2007) FatiGO+: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. Nucleic Acids Res., 35, W91-W96.
    • (2007) Nucleic Acids Res. , vol.35
    • Al-Shahrour, F.1    Minguez, P.2    Tarraga, J.3    Medina, I.4    Alloza, E.5    Montaner, D.6    Dopazo, J.7
  • 6
    • 48449095135 scopus 로고    scopus 로고
    • ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data
    • Antonov, A.V., Schmidt, T., Wang, Y. and Mewes, H.W. (2008) ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. Nucleic Acids Res., 36, W347-W351.
    • (2008) Nucleic Acids Res. , vol.36
    • Antonov, A.V.1    Schmidt, T.2    Wang, Y.3    Mewes, H.W.4
  • 8
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: current tools, limitations, and open problems
    • Khatri, P. and Draghici, S. (2005) Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics, 21, 3587-3595.
    • (2005) Bioinformatics , vol.21 , pp. 3587-3595
    • Khatri, P.1    Draghici, S.2
  • 9
    • 27544475950 scopus 로고    scopus 로고
    • Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts
    • Küffner, R., Fundel, K. and Zimmer, R. (2005) Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts. Bioinformatics, 21, ii259-ii267.
    • (2005) Bioinformatics , vol.21
    • Küffner, R.1    Fundel, K.2    Zimmer, R.3
  • 10
    • 0038017587 scopus 로고    scopus 로고
    • Mining microarray expression data by literature profiling
    • RESEARCH0055
    • Chaussabel, D. and Sher, A. (2002) Mining microarray expression data by literature profiling. Genome Biol., 3, RESEARCH0055.
    • (2002) Genome Biol. , vol.3
    • Chaussabel, D.1    Sher, A.2
  • 11
    • 33644638865 scopus 로고    scopus 로고
    • Discovering semantic features in the literature: a foundation for building functional associations
    • Chagoyen, M., Carmona-Saez, P., Shatkay, H., Carazo, J.M. and Pascual-Montano, A. (2006) Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinformatics, 7, 41.
    • (2006) BMC Bioinformatics , vol.7 , pp. 41
    • Chagoyen, M.1    Carmona-Saez, P.2    Shatkay, H.3    Carazo, J.M.4    Pascual-Montano, A.5
  • 12
    • 33847004014 scopus 로고    scopus 로고
    • Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation
    • Jelier, R., Jenster, G., Dorssers, L.C., Wouters, B.J., Hendriksen, P.J., Mons, B., Delwel, R. and Kors, J.A. (2007) Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation. BMC Bioinformatics, 8, 14.
    • (2007) BMC Bioinformatics , vol.8 , pp. 14
    • Jelier, R.1    Jenster, G.2    Dorssers, L.C.3    Wouters, B.J.4    Hendriksen, P.J.5    Mons, B.6    Delwel, R.7    Kors, J.A.8
  • 15
    • 0027457706 scopus 로고
    • SRS-an indexing and retrieval tool for flat file data libraries
    • Etzold, T. and Argos, P. (1993) SRS-an indexing and retrieval tool for flat file data libraries. Comput. Appl. Biosci., 9, 49-57.
    • (1993) Comput. Appl. Biosci. , vol.9 , pp. 49-57
    • Etzold, T.1    Argos, P.2
  • 16
    • 0002386913 scopus 로고
    • 2 from contingency tables, and the calculation of P
    • 2 from contingency tables, and the calculation of P.J. Roy. Stat. Soc., 85, 87-94.
    • (1922) J. Roy. Stat. Soc. , vol.85 , pp. 87-94
    • Fisher, R.A.1
  • 17
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc., 57, 289-300.
    • (1995) J. Roy. Stat. Soc. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 18
    • 13244249634 scopus 로고    scopus 로고
    • Handling multiple testing while interpreting microarrays with the Gene Ontology Database
    • Osier, M.V., Zhao, H. and Cheung, K.H. (2004) Handling multiple testing while interpreting microarrays with the Gene Ontology Database. BMC Bioinformatics, 5, 124.
    • (2004) BMC Bioinformatics , vol.5 , pp. 124
    • Osier, M.V.1    Zhao, H.2    Cheung, K.H.3
  • 20
    • 33749535603 scopus 로고    scopus 로고
    • Co-evolution of transcriptional and post-translational cell-cycle regulation
    • Jensen, L.J., Jensen, T.S., de Lichtenberg, U., Brunak, S. and Bork, P. (2006) Co-evolution of transcriptional and post-translational cell-cycle regulation. Nature, 443, 594-597.
    • (2006) Nature , vol.443 , pp. 594-597
    • Jensen, L.J.1    Jensen, T.S.2    de Lichtenberg, U.3    Brunak, S.4    Bork, P.5
  • 23
    • 75649144093 scopus 로고    scopus 로고
    • Mathematica Edition: Version 7.0
    • Wolfram Research, I. Wolfram Research, Inc., Champaign, Illinois
    • Wolfram Research, I. (2008) Mathematica Edition: Version 7.0. Wolfram Research, Inc., Champaign, Illinois. 38 Nucleic Acids Research, 2010, Vol. 38, No. 1.
    • (2008) Nucleic Acids Research, 2010 , vol.38 , Issue.1
  • 24
    • 0014784836 scopus 로고
    • Polyploidy in malignant melanoma
    • Whang-Peng, J., Chretien, P. and Knutsen, T. (1970) Polyploidy in malignant melanoma. Cancer, 25, 1216-1223.
    • (1970) Cancer , vol.25 , pp. 1216-1223
    • Whang-Peng, J.1    Chretien, P.2    Knutsen, T.3
  • 27
    • 0025735733 scopus 로고
    • Frequency of carriers of cystic fibrosis gene among patients with myeloid malignancy and melanoma
    • Warren, N., Holmes, J.A., al-Jader, L., West, R.R., Lewis, D.C. and Padua, R.A. (1991) Frequency of carriers of cystic fibrosis gene among patients with myeloid malignancy and melanoma. British Med. J., 302, 760-761.
    • (1991) British Med. J. , vol.302 , pp. 760-761
    • Warren, N.1    Holmes, J.A.2    al-Jader, L.3    West, R.R.4    Lewis, D.C.5    Padua, R.A.6
  • 28
    • 36949026694 scopus 로고    scopus 로고
    • Activation and regulation of ATM kinase activity in response to DNA double-strand breaks
    • Lee, J.H. and Paull, T.T. (2007) Activation and regulation of ATM kinase activity in response to DNA double-strand breaks. Oncogene, 26, 7741-7748.
    • (2007) Oncogene , vol.26 , pp. 7741-7748
    • Lee, J.H.1    Paull, T.T.2
  • 29
    • 34247481285 scopus 로고    scopus 로고
    • Targeting checkpoint kinase 1 in cancer therapeutics
    • Tse, A.N., Carvajal, R. and Schwartz, G.K. (2007) Targeting checkpoint kinase 1 in cancer therapeutics. Clin. Cancer Res., 13, 1955-1960.
    • (2007) Clin. Cancer Res. , vol.13 , pp. 1955-1960
    • Tse, A.N.1    Carvajal, R.2    Schwartz, G.K.3
  • 30
    • 44849120393 scopus 로고    scopus 로고
    • mda-9/Syntenin: more than just a simple adapter protein when it comes to cancer metastasis
    • Sarkar, D., Boukerche, H., Su, Z.Z. and Fisher, P.B. (2008) mda-9/Syntenin: more than just a simple adapter protein when it comes to cancer metastasis. Cancer Res., 68, 3087-3093.
    • (2008) Cancer Res. , vol.68 , pp. 3087-3093
    • Sarkar, D.1    Boukerche, H.2    Su, Z.Z.3    Fisher, P.B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.