Characterization of group A rotavirus infections in adolescents and adults from Pune, India: 1993-1996 and 2004-2007

Journal of Medical Virology

Volumn 82, Issue 3, 2010, Pages 519-527

  Tatte, Vaishali S ^a   Gentsch, Jon R ^b   Chitambar, Shobha D ^a  

^a NATIONAL INSTITUTE OF VIROLOGY   (India)

^b NATIONAL CENTER FOR IMMUNIZATION AND RESPIRATORY DISEASES   (United States)

Author keywords

Adult diarrhea; Epidemiology; G and P types; Rotavirus

Indexed keywords

PROTEIN VP6; VIRUS PROTEIN;

ADOLESCENT; ADULT; ARTICLE; CELL LINEAGE; GENE SEQUENCE; GENOTYPE; HUMAN; INDIA; MAJOR CLINICAL STUDY; MIXED INFECTION; MOLECULAR EPIDEMIOLOGY; PHYLOGENY; POLYMERASE CHAIN REACTION; PREVALENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS GENE; VIRUS INFECTION; VIRUS STRAIN;

ADOLESCENT; ADULT; AGED; ANTIGENS, VIRAL; CAPSID PROTEINS; CHILD; COMORBIDITY; FECES; FEMALE; GENOTYPE; HUMANS; INDIA; MALE; MIDDLE AGED; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; PREVALENCE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; YOUNG ADULT;

ANIMALIA; ROTAVIRUS; ROTAVIRUS A;

EID: 75449114922     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21708     Document Type: Article

References (52)

1. Anderson EJ, Weber SG. 2004. Rotavirus infection in adults. Lancet Infect Dis 4:91-99.
2. Ansaldi F, Pastorino B, Valle L, Durando P, Sticchi L, Tucci P, Biasci P, Lai P, Gasparini R, Icardi G. 2007. Molecular characterization of a new variant of rotavirus P[8]G9 predominant in a sentinal-based survey in central Italy. J Clin Microbiol 45:1011-1015.
3. Araujo IT, Assis RM, Fialho AM, Mascarenhas JD, Heinemann MB, Leite JP. 2007. Brazilian P[8]G1,P[8]G5, P[8]G9, and P[4]G2 rotavirus stains: Nucleotide sequence and phylogenetic analysis. J Med Virol 79:995-1001.
4. Arista S, Giammanco GM, De., Grazia S, Ramirez S, Biundo CL, Colomba C, CascioA,Martella V. 2006. Heterogeneity and temporal dynamics of evolution of G1 human rotaviruses in a settled population. J Virol 80:10724-10733.
5. Banyai K, Martella V, Jakab F, Melegh B, Szucs G. 2004. Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6] VP4 gene. J Clin Microbiol 42:4338-4343.
6. BokK,Matson DO, Gomez JA. 2002.Genetic variation of capsid protein VP7 in genotype G4 human rotavirus strains: Simultaneous emergence and spread of different lineages in Argentina. J Clin Microbiol 40:2016-2022.
7. Carraro E, Perosa AHS, Siqueira I, Pasternak J, Martino MDV. 2008. Rotavirus infections in children and adult patients attending in a tertiary hospital of Sao Paulo, Brazil. Brazil J Infect Dis 12:44-46.
8. Chitambar SD, Tatte V, Dhongde R, Kalrao V. 2008. High frequency of rotavirus viremia in children with acute gastroenteritis: Discordance of strains detected in stool and sera. J Med Virol 80:2169-2176.
9. Chouikha A, Fodha I, Noomen S, Bouzid L, Mastouri M, Peeze I, Beer MD, Dewar J, Geyer A, Sfar T, Gueddiche N, Messaadi F, Trabelsi A, Boujaafar N, Steele AD. 2007. Group A rotavirus strains circulating in the eastern center of Tunisia during a ten year period (1995-2004). J Med Virol 79:1002-1008.
10. Cook SM, Glass RI, Lebaron CW, Ho MS. 1990. Global seasonality of rotavirus infections. Bull WHO 68:171-177.
11. Crouch CF, Acres SD. 1984. Prevalence of rotavirus and coronavirus antigens in the feces of normal cows. Can J Comp Med 48:340-342.
12. Cunliffe NA, Gondwe JS, Graham SM, Thindwa BD, Dove W, Broadhead RL, Molyneux ME, Hart CA. 2001. Rotavirus strain diversity in Blantyre, Malawi, from 1997-1999. J Clin Microbiol 39:836-843.
13. Das S, Sen A, Uma G, Varghese V, Chaudhuri S, Bhattacharya SK, Mitra U, KobayashiN,Naik TN. 2002. Genomic diversity of groupA rotavirus strains infecting humans in eastern India. J Clin Microbiol 40:146-149.
14. delRefugioGonzalez-Losa M, Polanco-Marin GG,Manzano-Cabrera L, Puerto-Solis M. 2001. Acute gastroenteritis associated with rotavirus in adults. Arch Med Res 32:164-167.
15. Espinola EE, Amarilla A, Arbiza J, Parra GI. 2008. Sequence and phylogenetic analysis of the VP4 gene of human rotaviruses in Paraguay. Arch Virol 153:1067-1073.
16. EstesMK, Kapikian AZ. 2007. Rotaviruses. In: Knipe DM, Howley PM, Griffin DE, Martin MA, Lamb RA, Roizman B, Straus SE, editors. Fields virology. 5th edition. Philadelphia, PA: Lippincott-Raven Publishers. pp. 1917-1974.
17. Faruque AS, Malek MA, Khan AI, Hug S, Salam MA, Sack DA. 2004. Diarrhea in elderly people: Aetiology, and clinical characteristics. Scand J Infect Dis 36:204-208.
18. Fischer TK, Eugen-Olsen J, Pedersen AG, Molbak K, Bottiger B, Rostgaard K, Nielsen NM. 2005. Characterization of rotavirus strains in a Danish population: High frequency of mixed infections and diversity within the VP4 gene of P[8] strains. J Clin Microbiol 43:1099-1104.
19. Freeman MM, Kerin T, Jennifer H, Caustland KM, Gentsch J. 2008. Enhancement of detection and quantification of rotavirus in stool using a modified real time RT-PCR assay. J Med Virol 80:1489-1496.
20. Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Das BK, Bhan MK. 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365-1373.
21. Gentsch JR, Laird AR, Bielfelt B, Griffin DD,Banyai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI. 2005. Serotype diversity and reassortment between human and animal rotavirus strains: Implications for rotavirus vaccine programs. J Infect Dis 192:S146-S159.
22. Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276-282.
23. Hrdy DB. 1987. Epidemiology of rotaviral infection in adults. Rev Infect Dis 9:461-469.
24. Iturriza-Gomara M, Green J, Brown DW, Ramsay M, Desselberger U, Gray JJ. 2000a. Molecular epidemiology of human group A rotavirus infections in the United Kingdom between 1995 and 1998. J Clin Microbiol 38:4394-4401.
25. Iturriza-Gomara M, Green J, David WG, Desselberger U, Gray JJ. 2000b. Diversity within the VP4 gene of rotavirus P[8] strains: Implications for the reverse transcription-PCR genotyping. J Clin Microbiol 38:898-901.
26. Iturriza-Gomara M, Wong C, Blome S, Desselberger U, Gray J. 2002. Molecular characterization of VP6 genes of human rotavirus isolates: Correlation of genogroups with subgroups and evidence of independent segregation. J Virol 76:6596-6601.
27. Jain V, Das BK, Bhan MK, Glass RI, Gentsch JR, Indian Strain Surveillance Collaborating Laboratories. 2001. Great diversity of group A rotavirus strains and high prevalence of mixed rotavirus infections in India. J Clin Microbiol 39:3524-3529.
28. Kang G, Kelkar SD, Chitambar SD, Ray P, Naik T. 2005. Epidemiological profile of rotavirus infection in India: Challenges for the 21st century. J Infect Dis 192:S120-S126.
29. Kelkar SD, Ayachit VL. 2000. Circulation of group A rotavirus subgroups and serotypes in Pune, India, 1990-1997. J Health Popul Nutr 18:163-170.
30. Kelkar SD, Bhide VS, Ranshing SS, Bedekar SS. 2004. Rapid ELISA for the diagnosis of rotavirus. Ind J Med Res 119:60-65.
31. Kerin TK, Kane EM, Glass RI, Gentsch JR. 2007. Characterization of VP6 genes from rotavirus strains collected in the United States from 1996-2002. Virus Genes 35:489-495.
32. Kudo S, Zhou Y, Cao XR, Yamanashi S, Nakata S, Ushijima H. 2001. Molecular characterization in the VP7, VP4 and NSP4 genes of human rotavirus serotype 4 (G4) isolated in Japan and Kenya. Microbiol Immunol 45:167-171.
33. Kumar S, Tamura K, Nei M. 2004. MEGA 3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163.
34. Maldonado YA, Yolken RH. 1990. Rotavirus. Baillieres Clin Gastroenterol 4:609-625.
35. Mascarenhas J, D'Arc.P, Linarhes AC, Bayma APG, Lima JC, Sousa MS, Araujo IT, Heinemann MB, Gusmao RHP, Gabbay YB, Leite JPG. 2006. Molecular analysis of VP4, VP7 and NSP4 genes of P[6]G2 rotavirus genotype strains recovered from neonates admitted to hospital in Belem, Brazil. J Med Virol 78:281-289.
36. Page NA, Steele AD. 2004. Antigenic and genetic characterization of serotype G2 human rotavirus strains from the African continent. J Clin Microbiol 42:595-600.
37. Parashar UD, Gibson CJ, Bresse JS, Glass RI. 2006. Rotavirus and severe childhood diarrhea. Emerg Infect Dis 12:304-306.
38. PietruchinskiE,Benati F, Lauretti F, Kisielius J,UedaM,Volotao EM, Soares CC, Hoshino Y, Linhares RE, Nozawa C, Santos N. 2006. Rotavirus diarrhea in children and adults in a southern city of Brazil in 2003: Distribution of G-P types and finding of a rare G12 strain. J Med Virol 78:1241-1249.
39. Ramachandran M, Das BK, Vij A, Kumar R, Bhambal SS, Kesari N, Rawat H, Bahl L, Thakur S, Woods PA, Glass RI, Bhan MK, Gentsch JR. 1996. Unusual diversity of human rotavirus G and P genotypes in India. J Clin Microbiol 34:436-444.
40. Ramani S, Kang G. 2007. Burden of disease and molecular epidemiology of groupArotavirus infections in India. Ind JMed Res 125:612-632.
41. Ray PG, Kelkar SD. 2004. Measurement of antirotavirus IgM/IgA/IgG responses in the serum samples of Indian children following rotavirus diarrhea and their mothers. J Med Virol 72:416-423.
42. Rubliar-Abreu E, Hedlund KO, Svensson L, Mittelholzer C. 2005. Serotype G9 rotavirus infections in adults in Sweden. J Clin Microbiol 43:1374-1376.
43. Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/ genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29-56.
44. Sharma S, Ray P, Gentsh JR, Glass RI, Kalra V, Bhan MK. 2008. Emergence of [12G] rotavirus strains in Dehli, 2000-2007. J Clin Microbiol 46:1343-1348.
45. Solberg OD, Hasing ME, Trueba G, Eisenberg JNS. 2009. Characterization of novel VP7, VP4, and VP6 genotypes of a previously untypeable group A rotavirus. Virology 385:58-67.
46. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.
47. Timenetsky MC, Gouvea V, Santos N, Alge ME, Kisiellius JJ, Carmona RC. 1996. Outbreak of severe gastroenteritis in adults and children associated with type G2 rotavirus. J Diarrhoeal Dis Res 14:71-74.
48. Unicomb LE, Podder G, Gentsch JR, Woods PA, Hazan KZ, Faruque AS, Albert MJ, Glass RI. 1999. Evidence of high-frequency genomic reassortment of group A rotavirus strains in Bangladesh: Emergence of type G9 in 1995. J Clin Microbiol 37:1885-1891.
49. Wang YH, Kobayashi N, Zhou DJ, Yang ZQ, Zhou X, Peng JS, Zhu ZR, Zhao DF, Liu MQ, Gong J. 2007. Molecular epidemiologic analysis of group A rotaviruses in adults and children with Wuhan city, China, 2000-2006. Arch Virol 152:669-685.
50. Wilde J, Eiden J, Yolken R. 1990. Removal of inhibitory substances from human fecal specimens for detection of group A rotaviruses by reverse transcriptase and polymerase chain reaction. J Clin Microbiol 28:1300-1307.
51. Xin KQ, Morikawa S, Fang ZY, Mukoyama A, Okuda K, Ushijima H. 1993. Genetic variation in VP7 gene of human rotavirus serotype I (G1 type) isolated in Japan and China. Virology 197:813-816.
52. Zade JK, Chhabra P, Chitambar SD. 2009. Characterization ofVP7 and VP4 genes of rotavirus strains: 1990-1994 and 2000-2002. Epidemiol Infect 137:938-942.