Raman study of poly(alanine-glycine)-based peptides containing tyrosine, valine, and serine as model for the semicrystalline domains of Bombyx mori silk fibroin

Biopolymers

Volumn 75, Issue 4, 2004, Pages 314-324

  Taddei, Paola ^a   Asakura, Tetsuo ^b   Yao, Juming ^b   Monti, Patrizia ^a  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

Bombyx mori silk fibroin; Model peptides; Roman spectroscopy; Silk I and II; Tyrosine environment

Indexed keywords

CONFORMATIONS; CRYSTALLINE MATERIALS; HYDROGEN BONDS; RAMAN SPECTROSCOPY; SYNTHESIS (CHEMICAL);

CONFORMATIONAL TRANSITION; SOLID PHASE METHODS; TYROSINE; VALINE;

PROTEINS;

ALANINE DERIVATIVE; GLYCINE DERIVATIVE; PEPTIDE DERIVATIVE; SERINE; SILK FIBROIN; TYROSINE; VALINE;

AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; CONFORMATIONAL TRANSITION; HYDROGEN BOND; MOLECULAR INTERACTION; MOLECULAR MODEL; NONHUMAN; PEPTIDE ANALYSIS; PEPTIDE SYNTHESIS; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN STABILITY; PROTEIN STRUCTURE; RAMAN SPECTROMETRY; SILKWORM;

ANIMALS; BOMBYX; FIBROINS; MODELS, MOLECULAR; PEPTIDES; PROTEIN STRUCTURE, TERTIARY; SILK; SPECTRUM ANALYSIS, RAMAN;

BOMBYX; BOMBYX MORI;

EID: 7544240159     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/bip.20137     Document Type: Article

References (47)

1. Marsh, R. E.; Corey, R. B.; Pauling, L. Biochim Biophys Acta 1955, 16, 1-34.
2. Fraser, B.; MacRae, T. P. Conformations in Fibrous Proteins and Related Synthetic Polypeptides; Academic Press: New York, 1973; p 293.
3. Lotz, B.; Colonna Cesari, F. Biochimie 1979, 61, 205-214, and literature cited therein.
4. Nicholson, L. K.; Asakura, T.; Demura, M.; Cross, T. A. Biopolymers 1993, 33, 847-861.
5. Demura, M.; Minami, M.; Asakura, T.; Cross, T. A. J Am Chem Soc 1998, 120, 1300-1308.
6. Takahashi, Y.; Gehoh, M.; Yuzuriha, K. Int J Biol Macromol 1999, 24, 127-138.
7. Asakura, T.; Ashida, J.; Yamane, T.; Kameda, T.; Nakazawa, Y.; Ohgo, K.; Komatsu, K. J Mol Biol 2001, 306, 291-305.
8. Lucas, F.; Shaw, J. T. B.; Smith, S. G. Biochem J 1957, 66, 468-479.
9. Strydom D. J.; Haylett, T.; Stead, R. H. Biochem Biophys Res Commun 1977, 3, 932-938.
10. Zhou, C.; Confalonieri, F.; Medina, N.; Zivanovic, Y.; Esnault, C.; Yang T.; Jacquet, M.; Janin, J.; Duguet, M.; Perasso, R.; Li, Z. Nucleic Acids Res 2000, 28, 2413-2419.
11. Asakura, T.; Yao, J. Protein Sci 2002, 11, 2706-2713.
12. Asakura, T.; Yamane, T.; Nakazawa, Y.; Kameda, T.; Ando, K. Biopolymers 2001, 58, 521-525.
13. Anderson, J. P. Biopolymers 1998, 45, 307-321.
14. Fossey, S. A.; Nemethy, G.; Gibson, K. D.; Scheraga, H. A. Biopolymers 1991, 31, 1529-1541.
15. Asakura, T.; Kuzuhara, A.; Tabeta, R.; Saito, H. Macromolecules 1985, 18, 1841-1845.
16. Asakura, T.; Demura, M.; Date, T.; Miyashita, M.; Ogawa, K.; Williamson M. P. Biopolymers 1997, 41, 193-203.
17. Tu, A. T. Raman Spectroscopy in Biology: Principles and Applications; John Wiley & Sons, Ltd: Chichester, 1982.
18. Edwards, H. G. M.; Farwell, D. W. J Raman Spectrosc 1995, 26, 901-909, and references cited therein.
19. Frushour B. G.; Koenig J. L. In Advances in Infrared and Raman Spectroscopy, Vol.1; Clark, R. J. H., Hester, R. E., Eds.; Heyden, London, 1975; p 35.
20. Monti, P.; Taddei, P.; Freddi, G.; Asakura, T.; Tsukada, M. J Raman Spectrosc 2001, 32, 103-107.
21. Monti, P.; Taddei, P.; Freddi, G.; Ohgo, K.; Asakura, T. Biopolymers (Biospectroscopy) 2003, 72, 329-338.
22. Panitch, A.; Matsuki, K.; Cantor, E. J.; Cooper, S. J.; Atkins, E. D. T.; Fournier, M. J.; Mason, T. L.; Tirrell, D. A. Macromolecules 1997, 30, 42-49.
23. Asakura T.; Yao J.; Yamane T.; Umemura K.; Ulrich A.S. J Am Chem Soc 2002, 124, 8794-8795.
24. Zahn, H.; Schade, W.; Ziegler, K. Biochem J 1967, 104, 1019-1026.
25. Ishida, M.; Asakura, T.; Yokoi, M.; Saito, H. Macromolecules 1990, 23, 88-94.
26. Savitzky, A.; Golay, M. J. E. Anal Chem 1964, 36, 1627-1639.
27. Marquardt, D. W. J Soc Ind Appl Math 1963, 11, 431-436.
28. Baker, C.; Maddams, W. F.; Grasselli, J. G.; Hazle, M. A. S. Spectrochim Acta 1978, 34A, 761-763.
29. Siamwiza, M. N.; Lord, R. C.; Chen, M. C.; Takamatsu, T.; Harada, I.; Matsuura, H.; Shimanouchi, T. Biochemistry 1975, 14, 4870-4876.
30. Brack, A.; Spach G. Biopolymers 1972, 11, 563-586.
31. Magoshi, J.; Magoshi, Y.; Nakamura, S. Polymer Comm 1985, 26, 309-311.
32. Overman, S. A.; Thomas, G. J., Jr. Biochemistry 1999, 38, 4018-4027.
33. Moore, W. H.; Krimm, S. Biopolymers 1976, 15, 2465-2483.
34. Asakura, T.; Suita, K.; Kameda, T.; Afonin, S.; Ulrich, A. S. Magn Reson Chem 2004, 42, 258-266.
35. Ohgo, K.; Kurano, T. L.; Kumashiro, K. K.; Asakura, T. Biomacromolecules, in press.
36. Saito, H.; Tabeta, R.; Asakura, T.; Iwanaga, Y.; Shoji, A.; Ozaki, T.; Ando, I. Macromolecules 1984, 17, 1405-1412.
37. Takeuchi, H.; Watanabe, N.; Satoh, Y.; Harada, H. J Raman Spectrosc 1989, 20, 233-237.
38. Zheng, S.; Li, G.; Yao, W.; Yu, T. Appl Spectrosc 1989, 43, 1269-1272.
39. Fasman, G. D.; Itoh, K.; Liu, C. S.; Lord, R. C. Biopolymers 1978, 17, 125-143.
40. Krimm, S.; Bandekar, J. Adv Protein Chem 1986, 38, 181-364.
41. Harada, I.; Takeuchi, H. In Spectroscopy of Biological Systems. Advances in Spectroscopy. Clark R. J. H. and Hester R. E. (eds), Vol. 13, Chichester: John Wiley & Sons, 1986; pp 113-175.
42. Craig, W. S.; Gaber, B. P. J Am Chem Soc 1977, 99, 4130-4134.
43. Overman, S. A.; Aubrey, K.; Vispo, N. S.; Cesareni, G.; Thomas, G. J., Jr. Biochemistry 1994, 33, 1039-1042.
44. Wen, Z. Q.; Armstrong, A.; Thomas, G. J., Jr. Biochemistry 1999, 38, 3148-3156.
45. Arp, Z.; Autrey, D.; Laane, J.; Overman, S. A.; Thomas, G. J., Jr. Biochemistry 2001, 40, 2522-2529.
46. Thomas, G. J., Jr. Biopolymers (Biospectroscopy) 2002, 67, 214-225.
47. Asakura, T.; Sugino, R.; Yao, J.; Takashima, H.; Kishore, R. Biochemistry 2002, 41, 4415-4424.