-
1
-
-
0029633152
-
Electrostatics and diffusion of molecules in solution: Simulations with the University of Houston Brownian Dynamics program
-
Madura J D et al 1995 Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program Comput. Phys. Commun. 91 57-95
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 57-95
-
-
Madura, J.D.1
-
2
-
-
0000777707
-
Energetic coupling between DNA bending and base pair opening
-
Ramsetin J and Lavery R 1988 Energetic coupling between DNA bending and base pair opening Proc. Natl Acad. Sci. USA. 85 7231-5
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 7231-7235
-
-
Ramsetin, J.1
Lavery, R.2
-
3
-
-
0344972109
-
Investigating the dielectric effects of channel pore water on the electrostatic barriers of the permeation ion by the finite difference Poisson-Boltzmann method
-
Cheng W, Wang C X, Chen W Z, Xu Y W and Shi Y Y 1998 Investigating the dielectric effects of channel pore water on the electrostatic barriers of the permeation ion by the finite difference Poisson-Boltzmann method Eur. Biophys. J. 27 105-12
-
(1998)
Eur. Biophys. J.
, vol.27
, pp. 105-112
-
-
Cheng, W.1
Wang, C.X.2
Chen, W.Z.3
Xu, Y.W.4
Shi, Y.Y.5
-
4
-
-
0036217783
-
Long time dynamics of met-enkephalin: Comparison of explicit and implicit solvent models
-
Shen M-Y and Freed K F 2002 Long time dynamics of met-enkephalin: comparison of explicit and implicit solvent models Biophys. J. 82 1791-808
-
(2002)
Biophys. J.
, vol.82
, pp. 1791-1808
-
-
Shen, M.-Y.1
Freed, K.F.2
-
5
-
-
0142072231
-
Vibrational Stark effects calibrate the sensitivity of vibrational probes for electric fields in proteins
-
Suydam I T and Boxer S G 2003 Vibrational Stark effects calibrate the sensitivity of vibrational probes for electric fields in proteins Biochemistry 42 12050-5
-
(2003)
Biochemistry
, vol.42
, pp. 12050-12055
-
-
Suydam, I.T.1
Boxer, S.G.2
-
6
-
-
0042661367
-
Effect of overscreeming on the localization of hydrated electrons
-
Kornyshev A A and Nitzan A 2001 Effect of overscreeming on the localization of hydrated electrons Z. Phys. Chem. 215 701-15
-
(2001)
Z. Phys. Chem.
, vol.215
, pp. 701-715
-
-
Kornyshev, A.A.1
Nitzan, A.2
-
7
-
-
0036646150
-
Intramolecular modulation of electric fields in folding proteins
-
Fernández A 2002 Intramolecular modulation of electric fields in folding proteins Phys. Lett. A 299 217-20
-
(2002)
Phys. Lett. A
, vol.299
, pp. 217-220
-
-
Fernández, A.1
-
10
-
-
0036642699
-
Hydrogen network fluctuations and dielectric spectrometry of liquids
-
Kaatze U, Behrends R and Pottel R 2002 Hydrogen network fluctuations and dielectric spectrometry of liquids J. Non-Cryst. Solids 305 19-28
-
(2002)
J. Non-Cryst. Solids
, vol.305
, pp. 19-28
-
-
Kaatze, U.1
Behrends, R.2
Pottel, R.3
-
11
-
-
0011960339
-
Hydrophobicity at small and large length scales
-
Lum K, Chandler D and Weeks J D 1999 Hydrophobicity at small and large length scales J. Phys. Chem. 103 4570-7
-
(1999)
J. Phys. Chem.
, vol.103
, pp. 4570-4577
-
-
Lum, K.1
Chandler, D.2
Weeks, J.D.3
-
12
-
-
0035498860
-
Energetics of ion conduction through the K+ channel
-
Berneche S and Roux B 2001 Energetics of ion conduction through the K+ channel Nature 414 73-7
-
(2001)
Nature
, vol.414
, pp. 73-77
-
-
Berneche, S.1
Roux, B.2
-
13
-
-
0035039272
-
Structural determinants of MscL gating studied by molecular dynamics simulations
-
Gullingsrud J, Kosztin D and Schulten K 2001 Structural determinants of MscL gating studied by molecular dynamics simulations Biophys. J. 80 2074-81
-
(2001)
Biophys. J.
, vol.80
, pp. 2074-2081
-
-
Gullingsrud, J.1
Kosztin, D.2
Schulten, K.3
-
14
-
-
0035705881
-
Simulation approaches ion channel structure-function relationships
-
Tieleman D P, Biggin P, Smith G and Sansom M 2001 Simulation approaches ion channel structure-function relationships Q. Rev. Biophys. 34 473-561
-
(2001)
Q. Rev. Biophys.
, vol.34
, pp. 473-561
-
-
Tieleman, D.P.1
Biggin, P.2
Smith, G.3
Sansom, M.4
-
15
-
-
0007165005
-
Mobility and solvation of ions in channels
-
Lynden-Bell R M and Rasaiah J C 1996 Mobility and solvation of ions in channels J. Chem. Phys. 105 9266-80
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 9266-9280
-
-
Lynden-Bell, R.M.1
Rasaiah, J.C.2
-
16
-
-
0034667023
-
Water-vapor effect on the electrical conductivity of a single-walled carbon nanotube
-
Zahab A, Spina L, Poncharal P and Marlière C 2000 Water-vapor effect on the electrical conductivity of a single-walled carbon nanotube Phys. Rev. B 62 10000-3
-
(2000)
Phys. Rev. B
, vol.62
, pp. 10000-10003
-
-
Zahab, A.1
Spina, L.2
Poncharal, P.3
Marlière, C.4
-
17
-
-
0037422589
-
Insufficiently dehydrated hydrogen bonds as determinants of protein interactions
-
Fernández A and Scheraga H A 2003 Insufficiently dehydrated hydrogen bonds as determinants of protein interactions Proc. Natl Acad. Sci. USA. 100 113-8
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 113-118
-
-
Fernández, A.1
Scheraga, H.A.2
-
19
-
-
0035829539
-
Water conduction through the hydrophobic channel of a carbon nanotube
-
Hummer G, Rasaiah J C and Noworyta J P 2001 Water conduction through the hydrophobic channel of a carbon nanotube Nature 414 188-90
-
(2001)
Nature
, vol.414
, pp. 188-190
-
-
Hummer, G.1
Rasaiah, J.C.2
Noworyta, J.P.3
-
20
-
-
0035419743
-
Temperature effects on the static and dynamic properties of liquid water inside nanotubes
-
Martí J and Gordillo M C 2001 Temperature effects on the static and dynamic properties of liquid water inside nanotubes Phys. Rev. E 64 021504
-
(2001)
Phys. Rev. E
, vol.64
, pp. 021504
-
-
Martí, J.1
Gordillo, M.C.2
-
21
-
-
0035939951
-
Formation of ordered ice nanotubes inside carbon nanotubes
-
Koga K, Gao G T, Tanaka H and Zeng X C 2001 Formation of ordered ice nanotubes inside carbon nanotubes Nature 412 802-5
-
(2001)
Nature
, vol.412
, pp. 802-805
-
-
Koga, K.1
Gao, G.T.2
Tanaka, H.3
Zeng, X.C.4
-
22
-
-
0037041562
-
Helical ice-sheets inside carbon nanotubes in the physiological condition
-
Noon W H, Ausman K D, Smalley R E and Ma J 2002 Helical ice-sheets inside carbon nanotubes in the physiological condition Chem. Phys. Lett. 355 445-8
-
(2002)
Chem. Phys. Lett.
, vol.355
, pp. 445-448
-
-
Noon, W.H.1
Ausman, K.D.2
Smalley, R.E.3
Ma, J.4
-
23
-
-
0141521782
-
Anomalously immobilized water: A new water phase induced by confinement in nanotubes
-
Mashl R J, Joseph S, Aluru N R and Jakobsson E 2003 Anomalously immobilized water: a new water phase induced by confinement in nanotubes Nano Lett. 3 589-92
-
(2003)
Nano Lett.
, vol.3
, pp. 589-592
-
-
Mashl, R.J.1
Joseph, S.2
Aluru, N.R.3
Jakobsson, E.4
-
25
-
-
0001163718
-
Hydrogen bond structure of liquid water confined in nanotubes
-
Gordillo M C and Marti J 2000 Hydrogen bond structure of liquid water confined in nanotubes Chem. Phys. Lett. 329 341-5
-
(2000)
Chem. Phys. Lett.
, vol.329
, pp. 341-345
-
-
Gordillo, M.C.1
Marti, J.2
-
26
-
-
0000020246
-
A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions
-
Mahoney M W and Jorgensen W L 2000 A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions J. Chem. Phys. 112 8910-22
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 8910-8922
-
-
Mahoney, M.W.1
Jorgensen, W.L.2
-
27
-
-
0035424605
-
Combined fluctuating charge and polarizable dipole models: Application to a five-site water potential function
-
Stern H A, Rittner F, Berne B J and Friesner R A 2001 Combined fluctuating charge and polarizable dipole models: application to a five-site water potential function J. Chem. Phys. 115 2237-51
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 2237-2251
-
-
Stern, H.A.1
Rittner, F.2
Berne, B.J.3
Friesner, R.A.4
-
29
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen H J, Postma J P, van Gunsteren W F, Di Nola A and Haak J R 1984 Molecular dynamics with coupling to an external bath J. Phys. Chem. 81 3684-90
-
(1984)
J. Phys. Chem.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.1
Postma, J.P.2
Van Gunsteren, W.F.3
Di Nola, A.4
Haak, J.R.5
-
30
-
-
1542747445
-
Single-file transport of water molecules through a carbon nanotube
-
Berezhkovskii A and Hummer G 2002 Single-file transport of water molecules through a carbon nanotube Phys. Rev. Lett. 89 064503
-
(2002)
Phys. Rev. Lett.
, vol.89
, pp. 064503
-
-
Berezhkovskii, A.1
Hummer, G.2
-
31
-
-
0036971123
-
Dynamics of hydrogen bond desolvation in protein folding
-
Fernández A, Sosnick T R and Colubri A 2002 Dynamics of hydrogen bond desolvation in protein folding J. Mol. Biol. 321 659-75
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 659-675
-
-
Fernández, A.1
Sosnick, T.R.2
Colubri, A.3
-
32
-
-
0041821388
-
Dehydron: A structurally encoded signal for protein interaction
-
Fernández A and Scott L R 2003 Dehydron: a structurally encoded signal for protein interaction Biophys. J. 85 1914-28
-
(2003)
Biophys. J.
, vol.85
, pp. 1914-1928
-
-
Fernández, A.1
Scott, L.R.2
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