메뉴 건너뛰기




Volumn 27, Issue 2, 1998, Pages 105-112

Investigating the dielectric effects of channel pore water on the electrostatic barriers of the permeation ion by the finite difference Poisson-Boltzmann method

Author keywords

Electrostatic barrier; Pore constant; The FDPB method

Indexed keywords

ION CHANNEL; WATER;

EID: 0344972109     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002490050116     Document Type: Article
Times cited : (18)

References (35)
  • 1
  • 3
    • 0029863372 scopus 로고    scopus 로고
    • Molecular dynamics simulations of water within models of ion channels
    • Breed J, Sankararamakrishnan R, Kerr ID, Sansom MS (1996) Molecular dynamics simulations of water within models of ion channels. Biophys J 70:1643-1661
    • (1996) Biophys J , vol.70 , pp. 1643-1661
    • Breed, J.1    Sankararamakrishnan, R.2    Kerr, I.D.3    Sansom, M.S.4
  • 4
    • 0343063933 scopus 로고
    • Structure of proteins: Packing of alpha-helices and pleated sheets
    • Chothia C, Levitt M, Richardson D (1977) Structure of proteins: packing of alpha-helices and pleated sheets. Proc Natl Acad Sci USA 74:4130-4134
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 4130-4134
    • Chothia, C.1    Levitt, M.2    Richardson, D.3
  • 5
    • 0021118508 scopus 로고
    • Principles that determine the structure of proteins
    • Chothia C (1984) Principles that determine the structure of proteins. Annu Rev Biochem 53:537-572
    • (1984) Annu Rev Biochem , vol.53 , pp. 537-572
    • Chothia, C.1
  • 7
    • 0026107642 scopus 로고
    • Molecular dynamics simulation of small peptides: Dependence on dielectric model and PH
    • Daggett V, Kollman PA, Kuntz ID (1991) Molecular dynamics simulation of small peptides: dependence on dielectric model and PH. Biopolymers 31:285-304
    • (1991) Biopolymers , vol.31 , pp. 285-304
    • Daggett, V.1    Kollman, P.A.2    Kuntz, I.D.3
  • 8
    • 0029918684 scopus 로고    scopus 로고
    • Structural studies of synthetic peptides dissected from the voltage-gated sodium channel
    • Doak DG, Mulvey D, Kawaguchi K, Villalain J, Campell ID (1996) Structural studies of synthetic peptides dissected from the voltage-gated sodium channel. J Mol Biol 258:672-687
    • (1996) J Mol Biol , vol.258 , pp. 672-687
    • Doak, D.G.1    Mulvey, D.2    Kawaguchi, K.3    Villalain, J.4    Campell, I.D.5
  • 9
    • 84988087911 scopus 로고
    • Calculating the electrostatic potential of molecules in solution: Method and error assessment
    • Gilson MK, Sharp KA, Honig BH (1987) Calculating the electrostatic potential of molecules in solution: method and error assessment. J Comp Chem 9:327-335
    • (1987) J Comp Chem , vol.9 , pp. 327-335
    • Gilson, M.K.1    Sharp, K.A.2    Honig, B.H.3
  • 10
    • 0022368897 scopus 로고
    • The Structure of the voltage-sensitive sodium channel. Inferences derived from computer-aided analysis of the electrophorus electricus channel primary structure
    • Greenblatt RE, Blatt Y, Montai M (1985) The Structure of the voltage-sensitive sodium channel. Inferences derived from computer-aided analysis of the electrophorus electricus channel primary structure. FEBS Lett 193:125-134
    • (1985) FEBS Lett , vol.193 , pp. 125-134
    • Greenblatt, R.E.1    Blatt, Y.2    Montai, M.3
  • 11
    • 0026663131 scopus 로고
    • Quantitation of physico-chemical properties of the aqueous phase inside the phoE ionic channel
    • Gutman M, Tsfadia Y, Masad A, Nachiel E (1992) Quantitation of physico-chemical properties of the aqueous phase inside the phoE ionic channel. Biochim Biophys Acta 1109:141-148
    • (1992) Biochim Biophys Acta , vol.1109 , pp. 141-148
    • Gutman, M.1    Tsfadia, Y.2    Masad, A.3    Nachiel, E.4
  • 12
    • 0004834826 scopus 로고
    • Ion channel electrostatics and the shape of channel proteins
    • C. Miller (ed). Plenum, New York
    • Jordan PC (1986) Ion channel electrostatics and the shape of channel proteins. In: C. Miller (ed) Ion channel reconstitution. Plenum, New York, pp 37-55
    • (1986) Ion Channel Reconstitution , pp. 37-55
    • Jordan, P.C.1
  • 13
    • 0024374839 scopus 로고
    • How electrolyte shielding influences the electrical potential in transmembrane ion channels
    • Jordan PC, Bacquet RJ, McCammon JA, Tran P (1989) How electrolyte shielding influences the electrical potential in transmembrane ion channels. Biophys J 55:1041-1052
    • (1989) Biophys J , vol.55 , pp. 1041-1052
    • Jordan, P.C.1    Bacquet, R.J.2    McCammon, J.A.3    Tran, P.4
  • 14
    • 0028070549 scopus 로고
    • Parallel helix bundles and ion channels: Molecular modeling via simulated annealing and restrained molecular dynamics
    • Kerr ID, Sankararamakrishnan R, Smart OS, Sansom MSP (1994) Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics. Biophys J 67:1501-1515
    • (1994) Biophys J , vol.67 , pp. 1501-1515
    • Kerr, I.D.1    Sankararamakrishnan, R.2    Smart, O.S.3    Sansom, M.S.P.4
  • 16
    • 0017866923 scopus 로고
    • Electrostatic calculations for an ion channel. I. Energy and potential profiles and interaction between ions
    • Levitt DG (1978) Electrostatic calculations for an ion channel. I. Energy and potential profiles and interaction between ions. Biophys J 22:202-219
    • (1978) Biophys J , vol.22 , pp. 202-219
    • Levitt, D.G.1
  • 18
    • 0025298268 scopus 로고
    • Molecular anatomy and molecular design of channel proteins
    • Montal M (1990) Molecular anatomy and molecular design of channel proteins. FASEB J 4:2623-2635
    • (1990) FASEB J , vol.4 , pp. 2623-2635
    • Montal, M.1
  • 19
    • 0025913646 scopus 로고
    • Automated modeling of coiled coils: Application to the GCN4 dimerization region
    • Nilges M, Brunger AT (1991) Automated modeling of coiled coils: application to the GCN4 dimerization region. Protein Eng 4:649-659
    • (1991) Protein Eng , vol.4 , pp. 649-659
    • Nilges, M.1    Brunger, A.T.2
  • 21
    • 0024121468 scopus 로고
    • Channel protein engineering: Synthetic 22-mer peptide from the primary structure of the voltage-sensitive sodium channel forms ionic channels in lipid bilayers
    • Oiki S, Danho W, Montal M (1988) Channel protein engineering: synthetic 22-mer peptide from the primary structure of the voltage-sensitive sodium channel forms ionic channels in lipid bilayers. Proc Natl Acad Sci USA 85:2393-2397
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2393-2397
    • Oiki, S.1    Danho, W.2    Montal, M.3
  • 22
    • 0014481138 scopus 로고
    • Energy of an ion crossing a low dielectric membrane: Solution to four relevant electrostatic problems
    • Parsegian A (1969) Energy of an ion crossing a low dielectric membrane: solution to four relevant electrostatic problems. Nature 221:844-846
    • (1969) Nature , vol.221 , pp. 844-846
    • Parsegian, A.1
  • 23
    • 0001228862 scopus 로고
    • Nonlinear dielectric behavior of water in transmembrane ion channels: Ion energy barriers and the channel dielectric constant
    • Partenskii MB, Jordan PC (1992) Nonlinear dielectric behavior of water in transmembrane ion channels: ion energy barriers and the channel dielectric constant. J Phys Chem 96:3906-3910
    • (1992) J Phys Chem , vol.96 , pp. 3906-3910
    • Partenskii, M.B.1    Jordan, P.C.2
  • 24
    • 0028068829 scopus 로고
    • Influence of a channel-forming peptide on energy barriers to ion permeation, viewed from a continuum dielectric perspective
    • Partenskii MB, Dorman V, Jordan PC (1994) Influence of a channel-forming peptide on energy barriers to ion permeation, viewed from a continuum dielectric perspective. Biophys J 67:1429-1438
    • (1994) Biophys J , vol.67 , pp. 1429-1438
    • Partenskii, M.B.1    Dorman, V.2    Jordan, P.C.3
  • 25
    • 33749223814 scopus 로고
    • Reevaluation of the Born model of ion hydration
    • Rashin AA, Honig B (1985) Reevaluation of the Born model of ion hydration. J Phys Chem 89:5588-5593
    • (1985) J Phys Chem , vol.89 , pp. 5588-5593
    • Rashin, A.A.1    Honig, B.2
  • 26
    • 0017876485 scopus 로고
    • Packing of alpha-helices: Geometrical constraints and contact areas
    • Richmond TJ, Richards FM (1978) Packing of alpha-helices: geometrical constraints and contact areas. J Mol Biol 119:537-555
    • (1978) J Mol Biol , vol.119 , pp. 537-555
    • Richmond, T.J.1    Richards, F.M.2
  • 27
    • 0000763912 scopus 로고
    • Molecular basis for the Born model of ion solvation
    • Roux B, Yu H, Karplus M (1990) Molecular basis for the Born model of ion solvation. J Phys Chem 94:4683-4688
    • (1990) J Phys Chem , vol.94 , pp. 4683-4688
    • Roux, B.1    Yu, H.2    Karplus, M.3
  • 28
    • 33646940952 scopus 로고
    • Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-Alkanes
    • Ryckaert JP, Ciccotti G, Berendsen HJC (1977) Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-Alkanes. J Comput Phys 23:327-341
    • (1977) J Comput Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 29
    • 0027817476 scopus 로고
    • Structure and function of channel-forming peptaibols
    • Sansom MSP (1993) Structure and function of channel-forming peptaibols. Q Rev Biophys 26:365-421
    • (1993) Q Rev Biophys , vol.26 , pp. 365-421
    • Sansom, M.S.P.1
  • 30
    • 0027339698 scopus 로고
    • Influenza virus M2 protein: A molecular modeling study of the ion channel
    • Sansom MSP, Kerr ID (1993) Influenza virus M2 protein: a molecular modeling study of the ion channel. Protein Eng 6:65-74
    • (1993) Protein Eng , vol.6 , pp. 65-74
    • Sansom, M.S.P.1    Kerr, I.D.2
  • 31
    • 0025283002 scopus 로고
    • Electrostatic interactions in macromolecules: Theory and application
    • Sharp KA, Honig B (1990) Electrostatic interactions in macromolecules: theory and application. Annu Rev Biophys Chem 19:302-332
    • (1990) Annu Rev Biophys Chem , vol.19 , pp. 302-332
    • Sharp, K.A.1    Honig, B.2
  • 34
    • 0027092981 scopus 로고
    • The glycophorin A transmembrane domain dimer: Sequence-specific propensity for a right-handed supercoil of helices
    • Treutlein HR, Lemmon MA, Engelmann DM, Brunger AT (1992) The glycophorin A transmembrane domain dimer: sequence-specific propensity for a right-handed supercoil of helices. Biochem 31:12726-12733
    • (1992) Biochem , vol.31 , pp. 12726-12733
    • Treutlein, H.R.1    Lemmon, M.A.2    Engelmann, D.M.3    Brunger, A.T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.