A re-defined and generalized percent-overlap-of-activation measure for studies of fMRI reproducibility and its use in identifying outlier activation maps

NeuroImage

Volumn 50, Issue 1, 2010, Pages 124-135

  Maitra, Ranjan ^a  

^a Iowa State University   (United States)

Author keywords

Dice coefficient; Eigenvalues; Finger thumb opposition experiment; Intra class correlation coefficient; Outlier detection; Percent overlap; Perron Frobenius theorem; Principal components; Reliability; Summarized multiple Jaccard similarity coefficient

Indexed keywords

ARTICLE; BRAIN FUNCTION; CONTROLLED STUDY; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; HUMAN EXPERIMENT; METHODOLOGY; MOTOR PERFORMANCE; NON INVASIVE PROCEDURE; PRIORITY JOURNAL; RELIABILITY; REPRODUCIBILITY; RIGHT HANDEDNESS; TASK PERFORMANCE;

ALGORITHMS; BRAIN; BRAIN MAPPING; FINGERS; FUNCTIONAL LATERALITY; HUMANS; MAGNETIC RESONANCE IMAGING; MALE; MOTOR ACTIVITY; REPRODUCIBILITY OF RESULTS; THUMB; TIME FACTORS;

EID: 75249101298     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2009.11.070     Document Type: Article

References (47)

1. Adler R. The Geometry of Random Fields (1981), Wiley, New York
2. Allison D.B., Paultre F., Goran M.I., Poehlman E.T., and Heymseld S.B. Statistical considerations regarding the use of ratios to adjust data. Int. J. Obes. 19 (1995) 644-652
3. Aron A.R., Shohamy D., Clark J., Myers C., Gluck M.A., and Poldrack R.A. Human midbrain sensitivity to cognitive feedback and uncertainty during classification learning. J. Neurophysiol. 92 (2004) 1144-1152
4. Bapat R.B., and Raghavan T.E.S. Nonnegative Matrices and Applications. Cambridge University Press (1997), Cambridge, United Kingdom
5. Benjamini Y., and Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. Series B (Methodological) 57 1 (1995) 289-300. http://dx.doi.org/10.2307/2346101 URL http://dx.doi.org/10.2307/2346101
6. January. Biswal B., DeYoe A.E., and Hyde J.S. Reduction of physiological fluctuations in fMRI using digital filters. Magn. Reson. Med. 35 1 (1996) 107-113. http://view.ncbi.nlm.nih.gov/pubmed/8771028 URL http://view.ncbi.nlm.nih.gov/pubmed/8771028
7. Buchsbaum B.R., Greer S., Chang W.L., and Berman K.F. Meta-analysis of neuroimaging studies of the Wisconsin card-sorting task and component processes. Hum. Brain Mapp. 25 (2005) 35-45
8. Chen E.E., and Small S.L. Test-retest reliability in fMRI of language: group and task effects. Brain Lang. 102 2 (2007) 176-185. http://dx.doi.org/10.1016/j.bandl.2006.04.015 URL http://dx.doi.org/10.1016/j.bandl.2006.04.015
9. Colwell R.K., and Coddington J.A. Estimating terrestrial biodiversity through extrapolation. Philos. Trans. R. Soc. Lond. 345 (1994) 101-118
10. Cox R.W., and Hyde J.S. Software tools for analysis and visualization of fMRI data. NMR Biomed. 10 4-5 (1997) 171-178
11. Derrfuss J., Brass M., Neumann J., and von Cramon D.Y. Involvement of inferior frontal junction in cognitive control: meta-analyses of switching and stroop studies. Hum. Brain Mapp. 25 (2005) 22-34
12. Dice L.R. Measures of the amount of ecologic association between species. Ecology 26 (1945) 297-302
13. Efron B. Bootstrap methods: another look at the jackknife. Ann. Stat. 7 (1979) 1-26
14. Efron B., and Gong G. A leisurely look at the bootstrap, the jackknife, and cross-validation. Am. Stat. 37 1 (1983) 36-48
15. Fernández G., Sprecht K., Weis S., Tendolkar I., Reuber M., Fell J., P. K., Ruhlmann J., Reul J., and Elger C.E. Intrasubject reproducibility of presurgical language lateralization and mapping using fMRI. Neurology 60 (2003) 969-975
16. Friedman L., Stern H., Brown G.G., Mathalon D.H., Turner J., Glover G.H., Gollub R.L., Lauriello J., Lim K.O., Cannon T., Greve D.N., Bockholt H.J., Belger A., Mueller B., Doty M.J., He J., Wells W., Smyth P., Pieper S., Kim S., Kubicki M., Vangel M., and Potkin S.G. Test-retest and between-site reliability in a multicenter fMRI study. Human Brain Mapp. 29 8 (2008) 958-972. http://dx.doi.org/10.1002/hbm.20440 URL http://dx.doi.org/10.1002/hbm.20440
17. Genovese C.R., Noll D.C., and Eddy W.F. Estimating test-retest reliability in functional MR imaging: I. Statistical methodology. Magn. Reson. Med. 38 (1997) 497-507
18. Hajnal J.V., Myers R., Oatridge A., Schweiso J.E., Young J.R., and Bydder G.M. Artifacts due to stimulus-correlated motion in functional imaging of the brain. Magn. Reson. Med. 31 (1994) 283-291
19. Jaccard P. Ètude comparative de la distribution florale dans une portion des alpes et des jura. Bulletin del la Sociètè Vaudoise des Sciences Naturelles 37 (1901) 547579
20. Kherif F., Poline J.B., Meriaux S., Benali H., Flandin G., and Brett M. Group analysis in functional neuroimaging: selecting subjects using similarity measures. Neuroimage 20 4 (2003) 2197-2208
21. Koch G.G. Intraclass correlation coefficient. In: Kotz S., and Johnson N.L. (Eds). Encyclopedia of Statistical Sciences Vol. 4 (1982), John Wiley and Sons, New York 213-217
22. Lazar N.A., Luna B., Sweeney J.A., and Eddy W.F. Combining brains: a survey of methods for statistical pooling of information. Neuroimage 15 (2002) 538-550
23. Levandowsky M., and Winter D. Distance between sets. Nature 234 (1971) 34-35
24. Luo W.L., and Nichols T.E. Diagnosis and exploration of massively univariate neuroimaging models. Neuroimage 19 3 (2003) 1014-1032
25. Machielsen W.C., Rombouts S.A., Barkhof F., Scheltens P., and Witter M.P. fMRI of visual encoding: reproducibility of activation. Hum. Brain Mapp. 9 (2000) 156-164
26. Maitra R., Roys S.R., and Gullapalli R.P. Test-retest reliability estimation of functional MRI data. Magn. Reson. Med. 48 (2002) 62-70
27. Manoach D.S., Halpern E.F., Kramer T.S., Chang Y., Goff D.C., Rauch S.L., Kennedy D.N., and Gollub R.L. Test-retest reliability of a functional MRI working memory paradigm in normal and schizophrenic subjects. Am. J. Psychiatry 158 (2001) 955-958
28. McGonigle D.J., Howseman A.M., Athwal B.S., Friston K.J., Frackowiak R.S.J., and Holmes A.P. Variability in fMRI: an examination of intersession differences. Neuroimage 11 (2000) 708-734
29. McGraw K.O., and Wong S.P. Forming inferences about some intraclass correlation coefficients. Psychol. Methods 1 1 (1996) 30-46
30. McNamee R.L., and Lazar N.A. Assessing the sensitivity of fMRI group maps. Neuroimage 22 2 (2004) 920-931
31. Miezin F.M., Maccotta L., Ollinger J.M., Petersen S.E., and Buckner R.L. Characterizing the hemodynamic response: effects of presentation rate, sampling procedure, and the possibility of ordering brain activity based on relative timing. Neuroimage 11 (2000) 735-759
32. Noll F.C., Genovese C.R., Nystrom L.E., Vazquez A.L., Forman S.D., Eddy W.F., and Cohen J.D. Estimating test-retest reliability in functional MR imaging: II. Application to motor and cognitive activation studies. Magn. Reson. Med. 38 (1997) 508-517
33. R Development Core Team. R: A Language and Environment for Statistical Computing (2009), R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org ISBN 3-900051-07-0. URL http://www.R-project.org
34. Raemekers M., Vink M., Zandbelt B., van Wezel R.J.A., Kahn R.S., and Ramsey N.F. Test-retest reliability of fMRI activation during prosaccades and antisaccades. Neuroimage 36 (2007) 532-542
35. Ridderinkhof K.R., Ullsperger M., Cron E.A., and Nieuwenhuis S. The role of the medial frontal cortex in cognitive control. Science 306 (2004) 443-447
36. Rombouts S.A., Barkhof F., Hoogenraad F.G., Sprenger M., and Scheltens P. Within-subject reproducibility of visual activation patterns with functional magnetic resonance imaging using multislice echo planar imaging. Magn. Reson. Med. 16 (1998) 105-113
37. Ruddell S., Twiss S., and Pomeroy P. Measuring opportunity for sociality: quantifying social stability in a colonially breeding phocid. Anim. Behav. 74 (2007) 1357-1368
38. Seghier M., Friston K., and Price C. Detecting subject-specific activations using fuzzy clustering. Neuroimage 36 (2007) 594-605
39. Shrout P.E., and Fleiss J.L. Intraclass correlations: uses in assessing rater reliability. Psychol. Bull. 86 2 (1979) 420-428
40. Sørensen T. A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons. Biologiske Skrifter/Kongelige Danske Videnskabernes Selskab 5 4 (1948) 134
41. Sprecht K., Willmes K., Shah N.J., and Jäncke L. Assessment of reliability in functional imaging studies. J. Magn. Reson. Imaging 17 (2003) 463-471
42. Tulloss R.E. Assessment of similarity indices for undesirable properties and a new tripartite similarity index based on cost functions. In: Palm M.E., and Chapela I.H. (Eds). Mycology in Sustainable Development: Expanding Concepts, Vanishing Borders (1997), Parkway Publishers, North Carolina 122-143
43. Uttal W.R. The New Phrenology: The Limits of Localizing Cognitive Processes in the Brain (2001), The MIT Press, Cambridge, MA
44. Wei X., Yoo S.S., Dickey C.C., Zou K.H., Guttman C.R., and Panych L.P. Functional MRI of auditory verbal working memory: long-term reproducibility analysis. Neuroimage 21 (2004) 1000-1008
45. Wood R.P., Grafton S.T., Watson J.D.G., Sicotte N.L., and Mazziotta J.C. Automated image registration: II. intersubject validation of linear and non-linear models. J. Comput. Assist. Tomogr. 22 (1998) 253-265
46. Woolrich M. Robust group analysis using outlier inference. Neuroimage 41 (2008) 286-301
47. 2, f and t fields. Adv. Appl. Probab. 26 (1994) 13-42