메뉴 건너뛰기




Volumn 26, Issue 1, 2009, Pages 22-29

Annotation confidence score for genome annotation: A genome comparison approach

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 75249085091     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp613     Document Type: Article
Times cited : (8)

References (23)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul, S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 3
    • 75249083122 scopus 로고    scopus 로고
    • Centre for Horticulture and Lanscape, The University of Reading, UK. Available at, (last accessed date November 11)
    • Centre for Horticulture and Lanscape, The Richards Function, The University of Reading, UK. Available at http://www.horticultureandlandscape.rdg.ac.uk/hlm_richards.htm (last accessed date November 11, 2009).
    • (2009) The Richards Function
  • 6
    • 0037252761 scopus 로고    scopus 로고
    • iProClass: an integrated database of protein family, function and structure information
    • Huang, H. et al. (2003) iProClass: an integrated database of protein family, function and structure information. Nucleic Acids Res., 31, 390-392.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 390-392
    • Huang, H.1
  • 7
    • 0037433717 scopus 로고    scopus 로고
    • Evaluation of annotation strategies using an entire genome sequence
    • Iliopoulos, I. et al. (2003) Evaluation of annotation strategies using an entire genome sequence, Bioinformatics, 19, 717-726.
    • (2003) Bioinformatics , vol.19 , pp. 717-726
    • Iliopoulos, I.1
  • 8
    • 73349104765 scopus 로고    scopus 로고
    • Illunima Inc. Available at (last accessed date December 10, 2008)
    • Illunima Inc. (2007) DNA sequencing with Solexa technology. Available at http://www.illumina.com/downloads/SS_DNAsequencing.pdf (last accessed date December 10, 2008).
    • (2007) DNA sequencing with Solexa technology
  • 9
    • 30344472426 scopus 로고    scopus 로고
    • BioThesaurus: a web-based thesaurus of protein and gene names
    • Liu, H. et al. (2006a) BioThesaurus: a web-based thesaurus of protein and gene names. Bioinformatics, 22, 103-105.
    • (2006) Bioinformatics , vol.22 , pp. 103-105
    • Liu, H.1
  • 10
    • 33747894083 scopus 로고    scopus 로고
    • Quantitative Assessment of Dictionary-based Protein Named Entity Tagging
    • Liu, H. et al. (2006b) Quantitative Assessment of Dictionary-based Protein Named Entity Tagging. J. Am. Med. Inform. Assoc., 13, 497-507.
    • (2006) J. Am. Med. Inform. Assoc. , vol.13 , pp. 497-507
    • Liu, H.1
  • 11
    • 38549101119 scopus 로고    scopus 로고
    • The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
    • (Database issue)
    • Markowitz, V.M. et al. (2008) The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. Nucleic Acids Res., 36 (Database issue), 528-533.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 528-533
    • Markowitz, V.M.1
  • 12
    • 14644418424 scopus 로고    scopus 로고
    • Improving genome annotations using phylogenetic profile anomaly detection
    • Mikkelsen, T.S. et al. (2005) Improving genome annotations using phylogenetic profile anomaly detection, Bioinformatics, 21, 464-470.
    • (2005) Bioinformatics , vol.21 , pp. 464-470
    • Mikkelsen, T.S.1
  • 13
    • 52449084495 scopus 로고    scopus 로고
    • Identification and correction of abnormal, incomplete and mispredicted proteins in public databases
    • Nagy, A. et al. (2008) Identification and correction of abnormal, incomplete and mispredicted proteins in public databases. BMC Bioinform., 9, 353.
    • (2008) BMC Bioinform. , vol.9 , pp. 353
    • Nagy, A.1
  • 14
    • 75249105150 scopus 로고    scopus 로고
    • An Overview of MeSH
    • NIH. Available at (last accessed date November 11, 2009)
    • NIH (2007) An Overview of MeSH. Available at http://www.nlm.nih.gov/mesh/presentations/EAHIL_krakow_2007_sep/mesh_overview/index.htm (last accessed date November 11, 2009).
    • (2007)
  • 15
    • 0033055062 scopus 로고    scopus 로고
    • The use of gene clusters to infer functional coupling
    • Overbeek, R. et al. (1999) The use of gene clusters to infer functional coupling. Proc. Natl Acad. Sci. USA, 96, 2896-2901.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 2896-2901
    • Overbeek, R.1
  • 16
    • 84948481845 scopus 로고
    • An algorithm for suffix stripping
    • Porter, M.F. (1980) An algorithm for suffix stripping. Program, 4, 130-137.
    • (1980) Program , vol.4 , pp. 130-137
    • Porter, M.F.1
  • 17
    • 75249103648 scopus 로고    scopus 로고
    • Protein existence (last accessed date December 10, 2008)
    • Protein existence (2008) http://www.uniprot.org/manual/protein_existence (last accessed date December 10, 2008).
    • (2008)
  • 18
    • 4043147979 scopus 로고
    • A flexible growth function for empirical use
    • Richards, F.J. (1959) A flexible growth function for empirical use. J. Exp. Bot., 10, 290-300.
    • (1959) J. Exp. Bot. , vol.10 , pp. 290-300
    • Richards, F.J.1
  • 19
    • 0016800090 scopus 로고
    • A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase
    • Sanger, F. and Coulson, A.R. (1975) A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase. J. Mol. Biol., 94, 441-448.
    • (1975) J. Mol. Biol. , vol.94 , pp. 441-448
    • Sanger, F.1    Coulson, A.R.2
  • 20
    • 0017681196 scopus 로고
    • DNA sequencing with chain-terminating inhibitors
    • Sanger, F. et al. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl Acad. Sci. USA, 74, 5463-5467.
    • (1977) Proc. Natl Acad. Sci. USA , vol.74 , pp. 5463-5467
    • Sanger, F.1
  • 21
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov, R.L. et al. (1997) A genomic perspective on protein families. Science. 278, 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1
  • 22
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D. et al. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 11, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.11 , pp. 4673-4680
    • Thompson, J.D.1
  • 23
    • 33750688196 scopus 로고    scopus 로고
    • 454 sequencing put to the test using the complex genome of barley
    • Wicker, T. et al. (2006) 454 sequencing put to the test using the complex genome of barley. BMC Genomics, 7, 275.
    • (2006) BMC Genomics , vol.7 , pp. 275
    • Wicker, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.