Iron sources used by the nonpathogenic lactic acid bacterium Lactobacillus sakei as revealed by electron energy loss spectroscopy and secondary-ion mass spectrometry

Applied and Environmental Microbiology

Volumn 76, Issue 2, 2010, Pages 560-565

  Duhutrel, Philippe ^a   Bordat, Christian ^b   Wu, Ting Di ^c,d   Zagorec, Monique ^a   Guerquin Kern, Jean Luc ^c,d   Champomier Vergès, Marie Christine ^a  

^a Unité Flore Lactique et Environnement Carné   (France)

^b INRA   (France)

^c Centre Universitaire   (France)

^d INSTITUT CURIE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; DISSOCIATION; DRUG PRODUCTS; ELECTRON ENERGY LEVELS; ELECTRON SCATTERING; ENERGY DISSIPATION; IRON; LACTIC ACID; NANOTECHNOLOGY; SECONDARY EMISSION; SECONDARY ION MASS SPECTROMETRY;

COMPLEMENTARY TOOLS; GENOME SEQUENCES; LACTIC ACID BACTERIA; LACTIC ACID BACTERIUM LACTOBACILLUS SAKEI; LACTOBACILLUS SAKEI; NATURAL ECOSYSTEM; RARE SPECIES; STATIONARY PHASE;

ELECTRON ENERGY LOSS SPECTROSCOPY;

BACTERIUM; ELECTRON; GENETIC ANALYSIS; GENOME; MASS SPECTROMETRY;

BACTERIA (MICROORGANISMS); LACTOBACILLUS SAKEI;

EID: 75249084160     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02205-09     Document Type: Article

References (41)

1. Beveridge, T. J., M. N. Hughes, H. Lee, K. T. Leung, R. K. Poole, I. Sawaidis, S. Silver and J. T. Trevors. 1997. Metal-microbe interactions: contemporary approaches. Adv. Microb. Physiol. 38: 177-243.
2. Bockelmann, U., H. Lunsdorf, and U. Szewzyk. 2007. Ultrastructural and electron energy-loss spectroscopic analysis of an extracellular filamentous matrix of an environmental bacterial isolate. Environ. Microbiol. 9: 2137-2144.
3. Bordat, C., A. Constans, O. Bouet, I. Blanc, C. L. Trubert, R. Girot and G. Cournot. 1993. Iron distribution in thalassemic bone by energy-loss spectroscopy and electron, spectroscopic imaging. Calcif. Tissue Int. 53: 29-37.
4. Bordât, C., and J. L. Guerquin-Kern. 2008. Cryo-preparation procedures for elemental imaging by SIMS and EFTEM, p. 499-536. In A. Cavalier, D. Spehner and B. Humbel (ed.), Handbook of cryo-preparation methods for electron microscopy, vol.7. CRC Press, Boca Raton, FL.
5. Bordât, C., J. L. Guerquln-Kern, M. Lieberherr, and G. Cournot. 2004. Direct visualization of intracellular calcium in rat osteoblasts by energyfiltering transmission electron microscopy. Histochem. Cell Biol. 121: 31-38.
6. Bordat, C., M. Sich, F. Rety, O. Bouet, G. Cournot, C. A. Cuenod and O. Clément, 2000. Distribution of iron oxide nanoparticles in rat lymph nodes studied using electron energy loss spectroscopy (EELS) and electron, spectroscopic imaging (ESI). J. Magn. Reson. Imaging 12: 505-509.
7. Bruyneel, B., M. Vandewoestyne and W. Verstraete. 1989. Lactic add bacteria: microorganisms able to grow in the absence of available iron and copper. Biotechnol. Lett. 11: 401-406.
8. Chaillou, S., M. C. Champomier-Vergès, M. Cornet, A. M. Crutz-Le Coq, A. M. Dudez, V. Martin, S. Beauflls, E. Darbon-Rongère, R. Bossy, V. Loux, and M. Zagorec. 2005. The complete genome sequence of the meat-borne lactic add bacterium Lactobacillus sakei 23K. Nat. Biotechnol. 23: 1527-1533.
9. Chaillou, S., M. Daty, F. Baraige, A. M. Dudez, P. Anglade, R. Jones, C. A. Alpert, M. C. Champomier-Vergès and M. Zagorec. 2009. Intraspecies genomic diversity and natural population structure of the meat-borne lactic add bacterium Lactobacillus sakei. Appl. Environ. Microbiol. 75: 970-980.
10. Champomier-Verges, M. C., A. Stintzi, and J. M. Meyer. 1996. Acquisition of iron by the non-siderophore-producing Pseudomonas fragi. Microbiology 142: 1191-1199.
11. Crosa, J. H., and C. T. Walsh. 2002. Genetics and assembly line enzymology of siderophore biosynthesis in bacteria. Microbiol. Mol. Biol. Rev. 66: 223-249.
12. De Man, J. C., M. Rogosa and M. E. Sharpe. 1960. A medium for the cultivation of Lactobacilli. J. Appl. Bacteriol. 23: 130-135.
13. Duwat, P., S. Sourice, B. Cesselin, G. Lamberet, K. Vido, P. Gaudu, Y. Le Loir, F. Violet, P. Loubière, and A. Gruss. 2001. Respiration capacity of the fermenting bacterium Lactococcus lactis and its positive effects on growth and survival. J. Bacteriol. 183: 4509-4516.
14. Egerton, R. F. 1989. Electron energy-loss spectroscopy in the electron microscope. Plenum Press, New York, NY.
15. Elli, M., R. Zink, A. Rytz, R. Rentero, and L. Morelli. 2000. Iron requirement of Lactobacillus spp. in completely chemically defined growth media. J. Appl. Microbiol. 88: 695-703.
16. Eltsov, M., and B. Zuber. 2006. Transmission electron microscopy of the bacterial nucleoid. J. Struct. Biol. 156: 246-254.
17. Grohovaz, F., M. Bossi, R. Pezzati, J. Meldolesi, and F. T. Tarelli. 1996. High resolution ultrastructural mapping of total calcium: electron spectroscopic imaging electron, energy loss spectroscopy analysis of a physically/chemically processed nerve-muscle preparation. Proc. Natl. Acad. Sci. U. S. A. 93: 4799-4803.
18. Guerquln-Kern, J.-L., T.-D. Wu, C. Quintana, and A. Croisy. 2005. Progress in analytical imaging of the cell by dynamic secondary ion mass spectrometry (SIMS microscopy). Biochim. Biophys. Acta 1724: 228-238.
19. Hayat, M. 2000. Principles and techniques of electron microscopy: biological applications, 4th ed, p. 377-406. Cambridge University Press, Cambridge, United Kingdom.
20. Hertel, C., G. Schmidt, M. Fischer, K. Oellers, and W. P. Hammes. 1998. Oxygen-dependent regulation of the expression of the catalase gene katA of Lactobacillus sakei LTH677. Appl. Environ. Microbiol. 64: 1359-1365.
21. Hunter, R. C., A. P. Hitchcock, J. J. Dynes, M. Obst, and T. J. Beveridge. 2008. Mapping the speciation of iron in Pseudomonas aeruginosa biofilms using scanning transmission X-ray microscopy. Environ. Sci. Technol. 42: 8766-8772.
22. Imbert, M., and R. Blondeau. 1998. On the iron requirement of lactobacilli grown in chemically defined medium. Curr. Microbiol. 37: 64-66.
23. Jeanguillaume, C. 1987. Electron-energy loss spectroscopy and biology. Scanning Microsc. 1: 437-450.
24. Jeanguillaume, C., M. Tence, P. Trebbia, and C. Colliex. 1983. Electronenergy loss chemical mapping of low Z elements in biological sections. Scan. Electron Microsc. 745-756.
25. Jonas, L., G. Fulda, T. Salameh, W. Schmidt, G. E. Kroning, U. T. Hopt and H. Nizze. 2001. Electron microscopic detection of copper in the liver of two patients with morbus Wilson by EELS and EDX. Ultrastruct. Pathol. 25: 111-118.
26. Knauf, H. J., R. F. Vogel, and W. P. Hammes. 1992. Cloning, sequence, and phenotypic expression, of katA, which encodes the catalase of Lactobacillus sakei LTH677. Appl. Environ. Microbiol. 58: 832-839.
27. 27. Koop, A., I. Voss, A. Thesing, H. Kohl, R. Reichelt, and A. Steinbuchel. 2007. Identification and localization of cyanophycin in bacteria, cells via imaging of the nitrogen distribution using energy-filtering transmission electron microscopy. Biomacromolecules 8: 2675-2683. (Pubitemid 47516915)
28. Lauret, R., F. Morel-Devllle, F. Berthier, M. C. Champomier-Verges, P. Postma, S. D. Ehrlich, and M. Zagorec. 1996. Carbohydrate utilization in Lactobacillus sakei. Appl. Environ. Microbiol. 62: 1922-1927.
29. Li, T., T. D. Wu, L. Mazeas, L. Toffln, J. L. Guerquln-Kern, G. Leblon, and T. Bouchez. 2008. Simultaneous analysis of microbial identity and function, using NanoSIMS. Environ. Microbiol. 10: 580-588.
30. MacLeod, R. A. 1952. The toxicity of o-phenanthroline for lactic acid bacteria. J. Biol. Chem. 197: 751-761.
31. Makarova, K., A. Slesarev, Y. Wolf, A. Sorokin, B. Mirkin, E. Koonin, A. Pavlov, N. Pavlova, V. Karamychev, N. Polouchine, V. Shakliova, I. Grigoriev, Y. Lou, D. Rohksar, S. Lucas, K. Huang, D. M. Goodstein, T. Hawkins, V. Plengvidhya, D. Welker, J. Hughes, Y. Goh, A. Benson, K. Baldwin, J. H. Lee, I. Diaz-Muniz, B. Dosti, V. Smeianov, W. Wechter, R. Barabote, G. Lorca, E. Altermann, R. Barrangou, B. Gaiiesan, Y. Xie, H. Rawsthoriie, D. Tamir, C. Parker, F. Breidt, J. Broadbent, R. Hutkins, D. O'Sullivan, J. Steele, G. Unlu, M. Saler, T. Klaenhammer, P. Richardson, S. Kozyavkin, B. Weimer, and D. Mills. 2006. Comparative genomics of the lactic acid bacteria. Proc. Natl. Acad. Sci. U. S. A. 103: 15611-15616.
32. Miot, J., K. Benzerara, M. Obst, A. Kappler, F. Hegler, S. Schadler, C. Bouchez, F. Guyot, and G. Morin. 2009. Extracellular iron biomineralization by photoautotrophic iron-oxidizing bacteria. Appl. Environ. Microbiol. 75: 5586-5591.
33. Orphan, V. J., C. H. House, K. U. Hinrichs, K. D. McKeegan, and E. F. DeLong. 2001. Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis. Science 293: 484-487.
34. Pandey, A., F. Bringel, and J. M. Meyer. 1994. Iron requirement and search for siderophores in lactic add bacteria. Appl. Microbiol. Biotechnol. 40: 735-739.
35. Reimer, L., U. Zepke, J. Moesch, S. T. Schulze-Hillert, M. Ross-Messemer, W. Probst, and E. Weimer. 1992. EELS spectroscopy: a reference handbook of standard data for identification and interpretation of electron energy loss spectra and for generation of electron spectroscopic images. Carl Zeiss, Electron Optics Division, Oberkochen, Germany.
36. 36. Sebulsky, M. T., D. Hohnstein, M. D. Hunter, and D. E. Heinrichs. 2000. Identification and characterization of a membrane permease involved in iron-hydroxamate transport in Staphylococcus aureus. J. Bacteriol. 182: 4394-4400. (Pubitemid 30599800)
37. Siezen, R. J., M. J. C. Starrenburg, J. Boekhorst, B. Renckens, D. Molenaar, and J. Vlieg. 2008. Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche. Appl. Environ. Microbiol. 74: 424-436.
38. Sinha, A. K. 1972. Colorimetric assay of catalase. Anal. Biochem. 47: 389-394.
39. Vannier-Santos, M. A., A. Martiny, U. Lins, J. A. Urbina, V. M. Borges, and W. de Souza. 1999. Impairment of sterol biosynthesis leads to phosphorus and calcium accumulation in Leishmania acidocalclsomes. Microbiology 145: 3213-3220.
40. Wandersman, C., and P. Delepelaire. 2004. Baderial iron sources: from, siderophores to hemophores. Annu. Rev. Microbiol. 58: 611-647.
41. Weinberg, E. D. 1997. The Lactobacillus anomaly: total iron, abstinence. Perspect. Biol. Med. 40: 578-583.