Current knowledge about european eel anguilla anguilla (L.) mtDNA D-loop region haplotypic variety

Acta Zoologica Lituanica

Volumn 19, Issue 4, 2009, Pages 253-267

  Butkauskas, Dalius ^a   Ragauskas, Adomas ^a   Sruoga, Aniolas ^a   Ložys, Linas ^a   Tzeng, Wann Nian ^b  

^a VILNIUS UNIVERSITY   (Lithuania)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

Author keywords

A. anguilla; D loop; European eel; Haplotype; IBD; IBT; MtDNA; Panmixia

Indexed keywords

ANGUILLA ANGUILLA;

EID: 74949137621     PISSN: 13921657     EISSN: 16486919     Source Type: Journal    
DOI: 10.2478/v10043-009-0040-5     Document Type: Article

References (46)

1. Aljanabi, S. M. and Martinez, I. 1997. Universal and Rapid Salt-extraction of High Quality Genomic DNA for PCR-based Techniques. Nucleic Acids Research 25 (22): 4692-4693.
2. Aoyama, J. and Tsukamoto, K. 1997. Evolution of the Freshwater Eels. Naturwissenschaften 84: 17-21.
3. Åström, M. and Dekker, W. 2007. When will the eel Recover? A Full Life-Cycle Model. ICES Journal of Marine Science 64: 1491-1498.
4. Bandelt, H. J., Forster, P. and Röhl, A. 1999. Median-Joining Networks for Inferring Intraspecific Phylogenies. Molecular Biology and Evolution 16: 37-48.
5. Bonhommeau, S., Chassot, E. and Rivot, E. 2008. Fluctuations in European eel (Anguilla anguilla) Recruitment Resulting from Environmental Changes in the Sargasso Sea. Fisheries Oceanography 17 (1): 32-44.
6. Cano, J. M., Shikano, T., Kuparinen, A. and Merilä, J. 2008. Genetic Differentiation, Effective Population Size and Gene Flow in Marine Fishes: Implications for Stock Management. Journal of Integrated Fish Science 5: 1-10.
7. Çiftci, Y. and Okumuo, Ý. 2002. Fish Population Genetics and Applications of Molecular Markers to Fisheries and Aquaculture: I- Basic Principles of Fish Population Genetics. Turkish Journal of Fisheries and Aquatic Sciences 2: 145-155.
8. Daemen, E., Cross, T., Ollevier, F. and Volckaert, F. A. M. 2001. Analysis of the Genetic Structure of European Eel (Anguilla anguilla) Using Microsatellite DNA and mtDNR Markers. Marine Biology 139: 755-764.
9. Dannewitz, J., Maes, G. E., Johansson, L., Wickström, H., Volckaert, F. A. M. and Järvi, T. 2005. Panmixia in the European Eel: a Matter of Time. Proceedings of the Royal Society B 272: 1129-1137.
10. Daverat, F., Limburg, K. E., Thibault, I., Shiao, J. C., Dodson, J. J., Caron, F., Tzeng, W. N., Iizuka, Y. and Wickström, H. 2006. Phenotypic Plasticity of Habitat use by Three Temperate eel Species, Anguilla anguilla, A. japonica and A. rostrata. Marine Ecology Progress Series 308: 231-241.
11. Ewens, W. J. 1972. The Sampling Theory of Selectively Neutral Alleles. Theoretical and Popular Biology 3: 87-112.
12. Felsenstein, J. 1985. Confidence Limits on Phylogenies: An approach using the Bootstrap. Evolution 39: 783-791.
13. Forster, P., Harding, R., Torroni, A. and Bandelt, H. J. 1996. Origin and Evolution of Native American mtDNA Variation: A Reappraisal. American Journal of Human Genetics 59: 935-945.
14. Hendry, A. P. and Day, T. 2005. Population Structure Attributable to Reproductive Time: Isolation by Time and Adaptation by Time. Molecular Ecology 14: 901-916.
15. Huertas, M. and Cerdà, J. 2006. Stocking Density at Early Developmental Stages Affects Growth and Sex Ratio in the European Eel (Anguilla anguilla). Biological Bulleten 211: 286-296.
16. Ishikawa, S., Aoyama, J., Tsukamoto, K. and Nishida, M. 2001. Population Structure of the Japanese eel Anguilla japonica as Examined by Mitochondrial DNA Sequencing. Fisheries Science 67: 246-253.
17. Kettle, A. J., Heinrich, D., Barrett, J. H., Benecke, N. and Locker, A. 2008. Past Distributions of the European Freshwater eel from Archaeological and Palaeontological Evidence. Quaternary Science Reviews 27: 1309-1334.
18. Laikre, L., Larsson, L. C., Palmé, A., Charlier, J., Josefsson, M. and Rayman, N. 2008. Potentials for Monitoring Gene Level Biodiversity: using Sweden as an Example. Biodiversity Conservation 17: 893-910.
19. Lin, Y. J., Ložys, L., Shiao, J. C., Iizuka, Y and Tzeng, W. N. 2007. Growth Differences Between Naturally Recruited and Stocked European Eel Anguilla anguilla from Different Habitats in Lithuania. Journal of Fish Biology 71: 1773-1787.
20. Lintas, C., Hirano, J. and Archer, S. 1998. Genetic Variation of the European Eel (Anguilla anguilla). Molecular Marine Biology and Biotechnology 7 (4): 263-269.
21. Maes, G. E. and Volckaert, F. A. M. 2002. Clinal Genetic Variation and Isolation by Distance in the European Eel Anguilla anguilla (L.). Biological Journal of the Linnean Society 77: 509-521.
22. Maes, G. E., Volckaert, F. A. M. 2007. Challenges for Genetic Research in European Eel Management. ICES Journal of Marine Science 64: 1463-1471.
23. Morral, N., Bertranpetit, J., Estivill, X., Nunes, V., Casals, T., Giménez, J., Reis, A., Varon-Mateeva, R., Macek, M. et al. 1994. The origin of the major cystir fibrosis mutation (ÄF508) in European populations. Nature Genetics 7: 169-175.
24. Murgia, R., Tola, G., Hirano, J. and Archer, S. N. 1998. Genetic variation in Mediterranean fish determined from D-loop and cytochrome b mitochondrial DNA sequences. GenBank.
25. Nei, M. 1987. Molecular Evolutionary Genetics. New York: Columbia Univ. Press.
26. Okumuo, Ý. and Çiftci, Y. 2003. Fish Population Genetics and Molecular Markers: II- Molecular Markers and Their Applications in Fisheries and Aquaculture. Turkish Journal of Fisheries and Aquatic Sciences 3: 51-79.
27. Palm, S., Dannewitz, J., Prestegaard, T. and Wickström, H. 2009. Panmixia in European eel revisited: no genetic difference between maturing adults from southern and northern Europe. Heredity 103: 82-89.
28. Palstra, A. P., Van Ginneken, V. J. T., Murk, A. J. and Van den Thillart, G. E. E. J. M. 2006. Are Dioxin-like Contaminants Responsible for the Eel (Anguilla anguilla) Drama? Naturwissenschaften 93 (3):145-153.
29. Posada, D. and Crandall, K. A. 2001. Intraspecific Gene Genealogies: Trees Grafting into Networks. Trends in Ecology & Evolution 16 (1): 37-45.
30. Rozas, J., Sánchez-Delbarrio, J. C., Messeguer, X. and Rozas, R. 2003. DnaSP, DNA Polymorphism Analyses by the Coalescent and Other Methods. Bioinformatics 19: 2496-2497.
31. Rozen, S. and Skaletsky, H. J. 2000. Primer3 on the WWW for General Users and for Biologist Programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology: 365-386.
32. Saillard, J., Forster, P., Lynnerup, N., Bandelt, HJ. and Nørby, S. 2000. mtDNA Variation among Greenland Eskimos: the Edge of the Beringian expansion. American Journal of Human Genetics 67: 718-726.
33. Saitou, N. and Nei, M. 1987. The Neighbor-Joining Method: A New Method for Reconstructing Phylogenetic Trees. Molecular Biology and Evolution 4: 406-425.
34. Sang, T. K., Chang, H. Y., Chen, C. T. and Hui, C. F. 1994. Population Structure of the Japanese Eel, Anguilla japonica. Molecular and Biological Evolution 11 (2): 250-260.
35. Shiao, J. C., Ložys, L., Iizuka, Y. and Tzeng, W. N. 2006. Migratory Patterns and Contribution of Stocking to the Population of European Eel in Lithuania Waters as Indicated by Otolith Sr:Ca Ratios. Journal of Fish Biology 69: 749-769.
36. Sruoga, A., Butkauskas, D., Ragauskas, A. and Ložys, L. 2007. Investigation of Genetic Variability in the European Eel (Anguilla anguilla (L.)) in Lithuania Using Microsatellite DNA Markers. Acta Zoologica Lituanica 17 (2): 116-123.
37. Tajima, F. 1996. The Amount of DNA Polymorphism Maintained in a Finite population when the Neutral Mutation Rate Varies among Sites. Genetics 143: 1457-1465.
38. Tamura, K., Nei, M. and Kumar, S. 2004. Prospects for Inferring Very Large Phylogenies by Using the Neighbor- Joining Method. Proceedings of the National Academy of Sciences (USA) 101: 11030-11035.
39. Tamura, K., Dudley, J., Nei, M. and Kumar, S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Molecular Biology and Evolution 24: 1596-1599.
40. Trautner, J. 2006. Rapid Identification of European (Anguilla anguilla) and North American Eel (Anguilla rostrata) by Polymerase Chain Reaction. Inf. Fischereiforsch 53: 49-51.
41. Tsukamoto, K. and Arai, T. 2001. Facultative Catadromy of the Eel Anguilla japonica Between Freshwater and Seawater Habitats. Marine Ecology Progress Series 220: 265-276.
42. Tzeng, W. N., Wang, C. H., Wickström, H. and Reizenstein, M. 2000. Occurrence of the Semi-Catadromous European eel Anguilla anguilla in the Baltic Sea. Marine Biology 137: 93-98.
43. Van Ginneken, V., Durif, C., Balm, S. P., Boot, R., Verstegen, M. W. A., Antonissen, E. and Van den Thillart, G. 2007. Silvering of European Eel (Anguilla anguilla L.): Seasonal Changes of Morphological and Metabolic Parameters. Animal Biology 57 (1): 63-77.
44. Wirth, T. and Bernatchez, L. 2001. Genetic Evidence Against Panmixia in the European Eel. Nature 409: 1037-1040.
45. Wirth, T. and Bernatchez, L. 2003. Decline of North Atlantic Eels: a Fatal Synergy? Proceedings of the Royal Society B 270: 681-688.
46. Wysujack, K. 2007. The Precautionary Approach and the Management of the European Eel (Anguilla anguilla) - Critical Remarks. Inf. Fischereiforsch 54: 26-33.