Review of marking methods and release-recapture designs for estimating the survival of very small fish: Examples from the assessment of salmonid fry survival

Reviews in Fisheries Science

Volumn 17, Issue 3, 2009, Pages 391-401

  Skalski, John R ^a   Buchanan, Rebecca A ^a   Griswold, Jim ^b  

^a UNIVERSITY OF WASHINGTON   (United States)

^b WESTERN ECOSYSTEMS TECHNOLOGY INC   (United States)

Author keywords

External marks; Internal marks; Mark recapture; Survival estimation; Tagging

Indexed keywords

SALMONIDAE;

EID: 74949098372     PISSN: 10641262     EISSN: 15476553     Source Type: Journal    
DOI: 10.1080/10641260902752199     Document Type: Review

References (62)

1. Acolas, M. L., J. M. Roussel, J. M. Lebel, and J. L. Baliniere. Laboratory experiment on survival, growth, and tag retention following PIT injection into the body cavity of juvenile brown trout (Salmotrutta). Fish. Res., 86: 280-284 (2007).
2. Armstrong, G. C. Mortality, rate of growth, and fin regeneration of marked and unmarked lake trout fingerlings at the provincial fish hatchery, Port Arthur, Ontario. Trans. Am. Fish. Soc., 77: 129-131 (1949).
3. Bailey, R. E., J. R. Irvine, F. C. Dalziel, and T. C. Nelson. Evaluations of visible implant fluorescent tags for marking coho salmon smolts. N. Am. J. Fish. Manage., 18: 191-196 (1998).
4. Bart, A. N., G. A. Kindschi, H. Ahmed, J. Clark, J. Young, and Y. Zohar. Enhanced transport of calcein into rainbow trout, Oncorhynchus mykiss, larvae using cavitation level ultrasound. Aquaculture, 196: 189-197 (2001).
5. Bax, N. J. Early marine mortality of marked juvenile chum salmon (Oncorhynchus keta) released into Hood Canal, Puget Sound, Washington, in 1980. Can. J. Fish. Aquat. Sci., 40: 426-435 (1983).
6. Blankenship, H. L. Effects of time and fish size on coded wire tag loss from chinook and coho salmon. Am. Fish. Soc. Symp. Ser., 7: 237-243 (1990).
7. Bonneau, J. L., R. F. Thurow, and D. L. Scarnecchia. Capture, marking, and enumeration of juvenile bull trout and cutthroat trout in small, low conductivity streams. N. Am. J. Fish. Manage. 15: 563-568 (1995).
8. Brakensiek, K. E. and D. G. Hankin. Estimating overwinter survival of juvenile coho salmon in a northern California stream: Accounting for effects of passive integrated transponder tagging mortality and size-dependent survival. Trans. Am. Fish. Soc., 136: 1423-1437 (2007).
9. Brothers, E. B. Otolith marking. Am. Fish. Soc. Symp. Ser., 7: 183-202 (1990).
10. 2: An effective and easy-to-use field method to mark fish. Am. Fish. Soc. Symp. Ser., 7: 30-35 (1990).
11. Buckley, R. M., and H. L. Blankenship. Internal tags and marks: Internal extrinsic identification systems: Overview of implanted wire tags, otolith marks, and parasites. Am. Fish. Soc. Symp. Ser., 7: 173-182 (1990).
12. Buchanan, R. A. and J. R. Skalski. A migratory life-cycle release-recapture model for salmonid PIT-tag investigations. J. Agr. Biol. Environ. Stat., 12: 325-345 (2007).
13. Burnham, K., D. R. Anderson, G. C. White, C. Brownie, and K. H. Pollock. Design and analysis methods for fish survival experiments basedonrelease-recapture.Am.Fish.Soc.Monogr.,5:1-437(1987).
14. Carlson, S. R., L. G. Coggins Jr., and C. O. Swanton. A simple stratified design for mark-recapture estimation of salmon smolt abundance. Alaska Fish. Res. Bull., 5: 88-102 (1998).
15. Choe, M. K., and F. Yamazaki. Estimation of heritabilities of growth traits and phenotypic and genetic correlations in juvenile masu salmon, Oncorhynchus masou. Fish. Sci., 64: 903-908 (1998).
16. Close, T. L. Detection and retention of post-ocular visible implant elastomer in fingerling rainbow trout. N. Am. J. Fish. Manage., 20: 542-545 (2000).
17. Coble, D. W. Effects of fin-clipping on mortality and growth of yellow perch with a review of similar investigations. J. Wildlife Manage., 31: 173-180 (1967).
18. Coombs, K. A., J. K. Bailey, C. M. Herbinger, and G. W. Friars. Evaluation of various external marking techniques for Atlantic salmon. Am. Fish. Symp. Ser., 7: 142 146 (1990).
19. Cormack, R. M. Estimates of survival from the sighting of marked animals. Biometrika, 51: 429-438 (1964).
20. Cucherousset, J., R. A. Cunjak, R. Keeler, and R. Stump. The use of two new portable 12-mm PIT tag detectors to track small fish in shallow streams. N. Am. J. Fish. Manage., 25: 270-274 (2005).
21. Dussault, C., and M. A. Rodriguez. Field trials of marking stream salmonids by dye injection and coded-wire-tagging. N. Am. J. Fish. Manage., 17: 451-456 (1997).
22. Frenkel, V., G. Kindschi, and Y. Zohar. Noninvasive, mass marking of fish by immersion in calcein: Evaluation of fish size and ultrasound exposure on mark endurance. Aquaculture, 214: 169-183 (2002).
23. Gaines, P. C., and C. D. Martin. Feasibility of dual-marking age-0 chinook salmon for mark-recapture studies. N. Am. J. Fish. Manage., 24: 1456-1459 (2004).
24. Gharrett, A. J., and J. E. Seeb. Practical and theoretical guidelines for genetically marking fish populations. Am. Fish. Soc. Symp. Ser., 7: 407-417 (1990).
25. Hale, R. S., and J. H. Gray. Retention and detection of coded wire tags and elastomer tags in trout. N. Am. J. Fish. Manage., 18: 197-201 (1998).
26. Honeyfield, D. C., C. S. Ostrowski, J. W. Fletcher, and J. W. Mohler. Dietary calcein marking of brook trout, Atlantic salmon, yellow perch, and coho salmon scales. N. Am. J. Fish. Manage., 26: 431-437 (2006).
27. Hunter, J. G. Survival and production of pink and chum salmon in a coastal stream. J. Fish. Res. Board Can. Bull., 16: 835-886 (1959).
28. TM) in field efficacy trials. U.S. Fish and Wildlife Service, National INAD Office, Bozeman, Montana. http://www.fws.gov/fisheries/aadap/PDF/2003%20Calcein%20Annual%20Report.pdf (2003).
29. Johnson, B. O., and O. Ugedal. Effects of different kinds of fin-clipping on over-winter survival and growth of fingerling brown trout, Salmo trutta L., stocked in small streams in Norway. Aquacult. Res., 19: 305-311 (1988).
30. Johnson, J. H. Comparative survival and growth of Atlantic salmon from egg stocking and fry releases. N. Am. J. Fish. Manage., 24: 1409-1412 (2004).
31. Jolly, G. M. Explicit estimates from capture-recapture data with both death and immigration-stochastic model. Biometrika, 52: 225-247 (1965).
32. Kaill, W. M., M. K. Rawson, and T. Joyce. Retention rates of half-length coded wire tags implanted in emergent pink salmon. Am. Fish. Soc. Symp. Ser., 7: 253-258 (1990).
33. Kjelson, M. A., P. F. Raquel, and F. W. Fisher. Life history of fall-run juvenile Chinook salmon, Oncorhynchus tshawytscha, in the Sacramento-San Joaquin estuary, California. In: Estuarine Comparisons (V. S. Kennedy, Ed., pp. 393-411). New York: Academic Press (1982).
34. Kennedy, B. P., A. Klaue, J. D. Blum, C. L. Folt, and H. Hislow. Reconstructing the lives of fish using Sr isotopes in otoliths. Can. J. Fish. Aquat. Sci., 59: 925-929 (2002).
35. Knudsen, C. M., M. V. Johnston, S. L. Schroder, W. J. Bosch, D. E. Fast, and C. R. Strom. Effects of passive integrated transponder tags on smolt-to-adult recruit survival, growth, and behavior of hatchery spring Chinook salmon. N. Am. J. Fish. Manage. (in press).
36. Lebreton, J. D., K. P. Burnham, J. Clobert, and D. R. Anderson. Modeling survivaland testing biological hypotheses usingmarked animals: A unified approach with case studies. Ecol. Monogr., 62: 67-118 (1992).
37. McNeil, F. I., and E. J. Crossman. Fin clips in the evaluation of stocking programs for muskellunge, Esox masquinongy. Trans. Am. Fish. Soc., 108: 335-343 (1979).
38. Moffett, I. J. J., W. W. Crozier, and G. J. A. Kennedy. A comparison of five external marks for Atlantic salmon, Salmo salar L. Fish. Manage. Ecol., 4: 49-53 (1977).
39. Mohler, J. W. Producing fluorescent marks on Atlantic salmon fin rays with calcein via ismotic induction. N. Am. J. Fish. Manage., 23: 1109-1113 (2003).
40. Mohler, J. W., M. J. Millard, and J. W. Fletcher. Predation by cap-tive wild brook trout on calcein-marked versus nonmarked Atlantic salmon fry. N. Am. J. Fish. Manage., 22: 223-228 (2002).
41. Negus, M. T., and F. T. Tureson. Retention and nonlethal external detection of calcein marks in rainbow trout and Chinook salmon. N. Am. J. Fish. Manage., 24: 741-747 (2004).
42. Nielsen, L. A. Methods of marking fish and shellfish. Am. Fish. Soc. Spec. Publ., 23: 1-28 (1992).
43. Olsen, E. M., and L. A. Vollestad. An evaluation of visible implant elastomer for marking age-0 brown trout. N. Am. J. Fish. Manage., 21: 967-970 (2001).
44. Pacific Salmon Commission, Selective Fisheries Evaluation Committee. Special assignment-Review of marking for coded-wire tags and mark selective fishing. Report SFEC (06)-1.http://www.psc.org/pubs/SFEC06-1.pdf (2006).
45. Peltz, L., and J. Miller. Performance of half-length coded wire tags in a pink salmon hatchery marking program. Am. Fish. Soc. Symp. Ser., 7: 244-252 (1990).
46. Peterson, N. P., E. F. Prentice, and T. P. Quinn. Comparison of sequential coded wire and passive integrated transponder tags for assessing overwinter growth and survival of juvenile coho salmon. N. Am. J. Fish. Manage., 14: 870-873 (1994).
47. Pollock, K. H., S. R. Winterstein, C. M. Bunck, and P. D. Curtis. Survival analysis in telemetry studies: The staggered entry design. J. Wildlife Manage., 53: 7-15 (1989).
48. Ploskey, G. R., M. A. Weiland, J. S. Hughes, S. R. Zimmerman, R. E. Durham, E. S. Fischer, J. Kim, R. L. Townsend, J. R. Skalski, and R. L. McComas. 2007. Acoustic telemetry studies of juvenile Chinook salmon survival at the Lower Columbia projects in 2006. Technical report, U.S. Army Corps of Engineers, Portland District, Portland, OR. http://www.pnl.gov/main/publications/external/technical reports/PNNL-16560.pdf (2007).
49. Prentice, E. F., T. A. Flagg, and C. S. McCutcheon. Feasibility of using implantable passive integrated transponder (PIT) tags in salmonids. Am. Fish. Soc. Symp. Ser., 7: 317-322 (1990).
50. Quinn, T. P., E. C. Volk, and A. P. Hendry. Natural otolith microstructure patterns reveal precise homing to natal incubation sites by sockeye salmon (Oncorhynchus nerka). Can. J. Zool., 77: 766-775 (1999).
51. Ricker, W. E. Handbook of computations of biological statistics of fish populations. J. Fish. Res. Board Can. Bull., 119: 1-300 (1958).
52. Schroder, S. L., C. M. Knudsen, and E. C. Volk. Marking salmon fry with strontium chloride solutions. Can. J. Fish. Aquat. Sci., 52: 1141-1149 (1995).
53. Seber, G. A. F. A note on the multiple recapture census. Biometrika, 52: 249-259 (1965).
54. Seber, G. A. F. The Estimation of Animal Abundance. New York: MacMillan (1982).
55. Shepard, B. B., J. Robinson-Cox, S. C. Ireland, and R. G. White. Factors influencing retention of visible implant tags by west slope cutthroat trout inhabiting headwater streams of Montana. N. Am. J. Fish. Manage., 16: 913-920 (1996).
56. Shetter, D. S. The effect of fin removal on fingerling lake trout (Cristivomer namaycush). Trans. Am. Fish. Soc., 80: 260-277 (1951).
57. Skalski, J. R., and J. Griswold. A summary of methods for conducting salmonid fry mark-recapture studies for estimating survival in tributaries. Design and analysis of salmonid tagging studies in the Columbia Basin, Volume XXI, Bonneville Power Administration, Portland, OR, http://www.efw.bpa.gov/searchpublications/ (2006).
58. Skalski, J. R., A. Hoffmann, and S. G. Smith. Testing the significance of individual-andcohort-levelcovariatesinanimalsurvivalstudies.In: Marked Individuals in the Study of Bird Populations (J. D. Lebreton and P. M. North, Eds., pp. 9-28). Boston: Birkhauser Verlag (1993).
59. Skalski, J. R., J. Lady, R. Townsend, A. E. Giorgi, J. R. Stevenson, C. M. Peven, and R. D. McDonald. Estimating inriver survival of migrating salmonid smolts using radiotelemetry. Can. J. Fish. Aquat. Sci., 58: 1987-1997 (2001).
60. Skalski, J. R., S. G. Smith, R. N. Iwamoto, J. G. Williams, and A. Hoffmann. Use of PIT-tags to estimate survival of migrating juvenile salmonids in the Snake and Columbia Rivers. Can. J. Fish. Aquat. Sci., 55: 1484-1493 (1998).
61. Smith, S. G., W. D. Muir, J. G. Williams, and J. R. Skalski. Factors associated with travel time and survival of migrant yearling chinook salmon and steelhead in the Lower Snake River. N. Am. J. Fish. Manage., 22: 385-405 (2002).
62. Wenburg, J. K., and G. W. George. Placement of visible implant tags in the anal fin of wild coastal cutthroat trout. N. Am. J. Fish. Manage., 15: 874-877 (1995).