Estimating overwinter survival of juvenile coho salmon in a northern California stream: Accounting for effects of passive integrated transponder tagging mortality and size-dependent survival

Transactions of the American Fisheries Society

Volumn 136, Issue 5, 2007, Pages 1423-1437

  Brakensiek, Kyle E ^a,b   Hankin, David G ^a  

^a HUMBOLDT STATE UNIVERSITY   (United States)

^b Stillwater Sciences   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ESTIMATION METHOD; JUVENILE; MODELING; MORTALITY; OVERWINTERING; SALMONID; SIZE EFFECT; SURVIVAL;

CALIFORNIA; NORTH AMERICA; UNITED STATES;

ONCORHYNCHUS KISUTCH;

EID: 35848948850     PISSN: 00028487     EISSN: 15488659     Source Type: Journal    
DOI: 10.1577/T06-211.1     Document Type: Article

References (57)

1. Au, D. W. K. 1972. Population dynamics of the coho salmon and its response to logging in three coastal streams. Doctoral dissertation. Oregon State University, Corvallis.
2. Anderson, D. R., K. P. Burnham, and G. C. White. 1994. AIC model selection in overdispersed capture-recapture data. Ecology 75:1780-1793.
3. Arnason, A. N., and K. H. Mills. 1987. Detection of handling mortality and its effects on Jolly-Seber estimates for mark-recapture experiments. Canadian Journal of Fisheries and Aquatic Sciences 44(Supplement 1):64-73.
4. Beechie, T., E. Beamer, and L. Wasserman. 1994. Estimating coho salmon rearing habitat and smolt production losses in a large river basin, and implications for habitat restoration. North American Journal of Fisheries Management 14:797-811.
5. Bell, E. 2001. Survival, growth and movement of juvenile coho salmon (Oncorhynchus kisutch) over-wintering in alcoves, backwaters, and main channel pools in Prairie Creek, California. Master's thesis. Humboldt State University, Arcata, California.
6. Bell, E., and W. G. Duffy. 2007. Previously undocumented two-year freshwater residency of juvenile coho salmon in Prairie Creek, California. Transactions of the American Fisheries Society 136:966-970.
7. Bradford, M. J., G. C. Taylor, and J. A. Allan. 1997. Empirical review of coho salmon smolt abundance and the prediction of smolt production at the regional level. Transactions of the American Fisheries Society 126:49-64.
8. Brown, L. R., P. B. Moyle, and R. M. Yoshiyama. 1994. Historical decline and current status of coho salmon in California. North American Journal of Fisheries Management 14:237-261.
9. Brownie, C., D. R. Anderson, K. P. Burnham, and D. S. Robson. 1985. Statistical inference from band recovery data: a handbook, 2nd edition. U.S. Fish and Wildlife Service Resource Publication 156.
10. Brownie, C., and D. S. Robson. 1983. Estimation of time-specific survival rates for tag-resighting samples: a generalization of the Jolly-Seber model. Biometrics 39:437-453.
11. Bryant, M. D. 2000. Estimating fish populations by removal methods with minnow traps in southeast Alaska streams. North American Journal of Fisheries Management 20:923-930.
12. Burnham, K. P., and D. R. Anderson. 1998. Model selection and inference: a practical information theoretical approach. Springer-Verlag, New York.
13. Burnham, K. P., D. R. Anderson, G. C. White, C. Brownie, and K. H. Pollock. 1987. Design and analysis methods for fish survival experiments based on release-recapture. American Fisheries Society, Monograph 5, Bethesda, Maryland.
14. Bustard, D. R., and D. W. Narver. 1975. Aspects of the winter ecology of juvenile coho salmon (Oncorhynchus kisutch) and steelhead trout (Salmo gairdneri). Journal of the Fisheries Research Board of Canada 32:667-680.
15. Carothers, A. D. 1973. The effects of unequal catchability on Jolly-Seber estimates. Biometrics 29:79-100.
16. CDFG (California Department of Fish and Game). 2002. Status review of California coho salmon north of San Francisco. Candidate Species Status Review Report 2002-3 to the California Fish and Game Commission, Sacramento.
17. Cederholm, C. J., and W. J. Scarlett. 1981. Seasonal immigrations of juvenile salmonids into four small tributaries of the Clearwater River, Washington, 1977-1981. Pages 98-110 in E. L. Brannon and E. O. Salo, editors. Proceedings of the salmon and trout migratory behavior symposium. University of Washington, School of Fisheries, Seattle.
18. Cooch, E. G., and G. C. White, editors. 2006. Program MARK: a gentle introduction, 5th edition. Available: www.phidot.org/software/mark/docs/book. (September 2006).
19. Cormack, R. M. 1964. Estimates of survival from the sighting of marked animals. Biometrika 51:429-438.
20. Crone, R. A., and C. E. Bond. 1976. Life history of coho salmon (Oncorhynchus kisutch) in Sashin Creek, southeastern Alaska. U.S. National Marine Fisheries Service Fishery Bulletin 74:897-923.
21. Cucherousset, J., J. M. Roussel, R. Keeler, R. Cunjak, and R. Stump. 2005. The use of two new portable 12-mm PIT tag detectors to track small fish in shallow streams. North American Journal of Fisheries Management 25:270-274.
22. Eberhardt, L. L. 1978. Appraising variability in population studies. Journal of Wildlife Management 42:207-238.
23. Espenshade, E. B., editor. 1995. Goode's world atlas. Rand McNally, New York.
24. Ford, J. E., and D. G. Lonzarich. 2000. Over-winter survival and habitat use by juvenile coho salmon (Oncorhynchus kisutch) in two Lake Superior tributaries. Journal of Great Lakes Research 26:94-101.
25. Good, T. P., R. S. Waples, and P. Adams, editors. 2005. Updated status of federally listed ESUs of West Coast salmon and steelhead. NOAA Technical Memorandum NMFS-NWFSC-66.
26. Hartman, G. F., and J. C. Scrivener. 1990. Impacts of forestry practices on a coastal stream ecosystem, Carnation Creek, British Columbia. Canadian Bulletin of Fisheries and Aquatic Sciences 223.
27. Holtby, B. L. 1988. Effects of logging on stream temperatures in Carnation Creek, British Columbia, and associated impacts on the coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences 45:502-515.
28. Janda, R. J. K. M. Nolan, D. R. Harden, and S. M. Colrnan. 1975. Watershed conditions in the drainage basin of Redwood Creek, Humboldt County, California. U.S. Geological Survey, Open-File Report 75-568, Reston, Virginia.
29. Jolly, G. M. 1965. Explicit estimates from capture-recapture data with both death and immigration-stochastic model. Biometrika 52:225-247.
30. Lebreton, J. D., K. P. Burnham, J. Colbert, and D. R. Anderson. 1992. Modeling survival and testing biological hypotheses using marked animals: a unified approach with case studies. Ecological Monographs 62:67-118.
31. McMahon, T. E., and G. F. Hartman. 1989. Influence of cover complexity and current velocity on winter habitat use by juvenile coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences 46:1551-1557.
32. Murphy, M. L., J. F. Thedinga, K. V. Koski, and G. B. Grette. 1984. A stream ecosystem in an old-growth forest on southeast Alaska, part V: seasonal changes in habitat utilization by juvenile salmonids. Pages 89-98 in W. R. Meehan, T. R. Merrell, Jr., and T. A. Hanley, editors. Proceedings of a symposium on fish and wildlife relationships in old-growth forests. American Institute of Fishery Research Biologists, Asheville, North Carolina.
33. Nickelson, T. E., and P. W. Lawson. 1998. Population viability of coho salmon, Oncorhynchus kisutch, in Oregon coastal basins: application of a habitat-based life cycle model. Canadian Journal of Fisheries and Aquatic Sciences 55:2383-2392.
34. Nickelson, T. E., J. D. Rodgers, S. L. Johnson, and M. F. Solazzi. 1992a. Seasonal changes in habitat use by juvenile coho salmon (Oncorhynchus kisutch) in Oregon coastal streams. Canadian Journal of Fisheries and Aquatic Sciences 49:783-789.
35. Nickelson, T. E., M. F. Solazzi, S. L. Johnson, and J. D. Rodgers. 1992b. An approach to determining stream carrying capacity and limiting habitat for coho salmon (Oncorhynchus kisutch). Pages 251-260 in L. Berg and P. W. Delaney, editors. Proceedings of the coho workshop, Nanaimo, British Columbia, May 26-28, 1992. Canada Department of Fisheries and Oceans, Pacific Region, Association of Professional Biologists of British Columbia, and American Fisheries Society, North Pacific International Chapter, Vancouver.
36. Nielsen, J. L. 1998. Electrofishing California's endangered fish populations. Fisheries 23(12):6-12.
37. Peterson, N. P. 1982. Population characteristics of juvenile coho salmon (Oncorhynchus kisutch) wintering in riverine ponds. Canadian Journal of Fisheries and Aquatic Sciences 39:1303-1307.
38. Peterson, N. P., E. F. Prentice, and T. P. Quinn. 1994. Comparison of a sequential coded wire and passive integrated transponder tags for assessing winter growth and survival of juvenile coho salmon. North American Journal of Fisheries Management 14:870-873.
39. Peterson, N. P., and L. M. Reid. 1984. Wall-base channels: their evolution, distribution, and use by juvenile coho salmon in the Clearwater River, Washington. Pages 215-226 in J. M. Walton and D. B. Houston, editors. Proceedings of an Olympic wild fish conference. Peninsula College, Fisheries Technology Program, Port Angeles, Washington.
40. Pollock, M. M., G. R. Pess, T. J. Beechie, and D. R. Montgomery. 2004. The importance of beaver ponds to coho salmon production in the Stillaguamish River basin, Washington, USA. North American Journal of Fisheries Management 24:749-760.
41. Prentice, E. F., T. A. Flagg, and C. S. McCutcheon. 1987. A study to determine the biological feasibility of a new tagging system, 1986-1987. Bonneville Power Administration, Portland, Oregon.
42. Prentice, E. F., T. A. Flagg, and C. S. McCutcheon. 1990. Feasibility of using passive integrated transponder (PIT) tags in salmonids. Pages 317-322 in N. C. Parker, A. E. Giorgi, R. C. Heidinger, D. B. Jester, Jr., E. D. Price, and G. A. Winans, editors. Fish-marking techniques. American Fisheries Society, Symposium 7, Bethesda, Maryland.
43. Quinn, T. P., and N. P. Peterson. 1996. The influence of habitat complexity and fish size on over-winter survival and growth of individually marked juvenile coho salmon (Oncorhynchus kisutch) in Big Beef Creek, Washington. Canadian Journal of Fisheries and Aquatic Sciences 53:1555-1564.
44. Reeves, G. H., F. H. Everest, and T. E. Nickelson. 1989. Identification of physical habitats limiting the production of coho salmon in western Oregon and Washington. U.S. Forest Service General Technical Report PNW-245.
45. Roussel, J. M., A. Haro, and R. A. Cunjak. 2000. Field test of a new method for tracking small fishes in shallow rivers using passive integrated transponder (PIT) technology. Canadian Journal of Fisheries and Aquatic Sciences 57:1326-1329.
46. Sandercock, F. K. 1991. Life history of coho salmon (Oncorhynchus kisutch). Pages 397-455 in C. Groot and L. Margolis, editors. Pacific salmon life histories. University of British Columbia Press, Vancouver.
47. Scarlett, W. J., and C. J. Cederholm. 1984. Juvenile coho salmon fall-winter utilization of two small tributaries of the Clearwater River, Jefferson County, Washington. Pages 227-242 in J. M. Walton and D. B. Houston, editors. Proceedings of an Olympic wild fish conference. Peninsula College, Fisheries Technology Program, Port Angeles, Washington.
48. Seber, G. A. F. 1965. A note on the multiple recapture census. Biometrika 52:249-259.
49. Shapovalov, L., and A. C. Taft. 1954. The life histories of the steelhead rainbow trout (Salmo gairdneri) and silver salmon (Oncorhynchus kisutch) with special reference to Wadell Creek, California, and recommendations regarding their management. California Department of Fish and Game Fish Bulletin 98.
50. Shirvell, C. S. 1994. Effects of changes in streamflow on the microhabitat use and movements of sympatric juvenile coho (Oncorhynchus kisutch) and Chinook salmon (O. tshawytscha) in a natural stream. Canadian Journal of Fisheries and Aquatic Sciences 51:1644-1652.
51. Skalski, J. R. 1997. Estimating season-wide survival rates of outmigrating salmon smolts in the Snake River, Washington. Canadian Journal of Fisheries and Aquatic Sciences 55:761-769.
52. Skalski, J. R., S. G. Smith, R. N. Iwamoto, J. G. Williams, and A. Hoffmann. 1998. Use of passive integrated transponder tags to estimate survival of migrant juvenile salmonids in the Snake and Columbia rivers. Canadian Journal of Fisheries and Aquatic Sciences 55:1484-1493.
53. Solazzi, M. F., T. E. Nickelson, S. L. Johnson, and J. D. Rodgers. 2000. Effects of increasing winter rearing habitat on abundance of salmonids in two coastal Oregon streams. Canadian Journal of Fisheries and Aquatic Sciences 57:906-914.
54. Swales, S., F. Caron, J. R. Irvine, and C. D. Levings. 1988. Wintering habitats of coho salmon (Oncorhynchus kisutch) and other juvenile salmonids in the Coldwater River, British Columbia. Canadian Journal of Zoology 66:254-261.
55. Swales, S., and C. D. Levings. 1989. Role of off-channel ponds in the life cycle of coho salmon (Oncorhynchus kisutch) and other juvenile salmonids in the Coldwater River, British Columbia. Canadian Journal of Fisheries and Aquatic Sciences 46:232-242.
56. Tschaplinski, P. J., and G. F. Hartman. 1983. Winter distribution of juvenile coho salmon (Oncorhynchus kisutch) before and after logging in Carnation Creek, British Columbia, and some implications for winter survival. Canadian Journal of Fisheries and Aquatic Sciences 40:452-461.
57. White, G. C., and K. P. Burnham. 1999. Program MARK: survival estimation from populations of marked animals. Bird Study 46(Supplement):120-138.