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Volumn 5, Issue 12, 2009, Pages

Design principles for ligand-sensing, conformation-switching ribozymes

Author keywords

[No Author keywords available]

Indexed keywords

DEGRADATION; ECONOMIC AND SOCIAL EFFECTS; MEDICAL APPLICATIONS; NUCLEIC ACIDS; THERMODYNAMICS;

EID: 74549198217     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000620     Document Type: Article
Times cited : (41)

References (30)
  • 4
    • 36549086771 scopus 로고    scopus 로고
    • Toward reprogramming bacteria with small molecules and RNA
    • Gallivan JP (2007) Toward reprogramming bacteria with small molecules and RNA. Curr Opin Chem Biol 11: 612-619.
    • (2007) Curr Opin Chem Biol , vol.11 , pp. 612-619
    • Gallivan, J.P.1
  • 5
    • 48249104039 scopus 로고    scopus 로고
    • Riboswitches: Emerging themes in RNA structure and function
    • Montange RK, Batey RT (2008) Riboswitches: emerging themes in RNA structure and function. Annu Rev Biophys 37: 117-133.
    • (2008) Annu Rev Biophys , vol.37 , pp. 117-133
    • Montange, R.K.1    Batey, R.T.2
  • 6
    • 7444246060 scopus 로고    scopus 로고
    • Triggered amplification by hybridization chain reaction
    • Dirks RM, Pierce NA (2004) Triggered amplification by hybridization chain reaction. Proc Natl Acad Sci U S A 101: 15275-15278.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 15275-15278
    • Dirks, R.M.1    Pierce, N.A.2
  • 7
    • 41449115906 scopus 로고    scopus 로고
    • DNA aptamer folding on gold nanoparticles: From colloid chemistry to biosensors
    • Zhao W, Chiuman W, Lam JC, McManus SA, Chen W, et al. (2008) DNA aptamer folding on gold nanoparticles: from colloid chemistry to biosensors. J Am Chem Soc 130: 3610-3618.
    • (2008) J Am Chem Soc , vol.130 , pp. 3610-3618
    • Zhao, W.1    Chiuman, W.2    Lam, J.C.3    McManus, S.A.4    Chen, W.5
  • 8
    • 21444457242 scopus 로고    scopus 로고
    • Programmable ligand-controlled riboregulators of eukaryotic gene expression
    • Bayer TS, Smolke CD (2005) Programmable ligand-controlled riboregulators of eukaryotic gene expression. Nat Biotechnol 23: 337-343.
    • (2005) Nat Biotechnol , vol.23 , pp. 337-343
    • Bayer, T.S.1    Smolke, C.D.2
  • 9
    • 0033616774 scopus 로고    scopus 로고
    • Engineering precision RNA molecular switches
    • Soukup GA, Breaker RR (1999) Engineering precision RNA molecular switches. Proc Natl Acad Sci U S A 96: 3584-3589.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 3584-3589
    • Soukup, G.A.1    Breaker, R.R.2
  • 10
    • 0035812605 scopus 로고    scopus 로고
    • In vitro selection of allosteric ribozymes: Theory and experimental validation
    • Piganeau N, Thuillier V, Famulok M (2001) In vitro selection of allosteric ribozymes: theory and experimental validation. J Mol Biol 312: 1177-1190.
    • (2001) J Mol Biol , vol.312 , pp. 1177-1190
    • Piganeau, N.1    Thuillier, V.2    Famulok, M.3
  • 11
    • 0034936573 scopus 로고    scopus 로고
    • In vitro selection of nucleoprotein enzymes
    • Robertson MP, Ellington AD (2001) In vitro selection of nucleoprotein enzymes. Nat Biotechnol 19: 650-655.
    • (2001) Nat Biotechnol , vol.19 , pp. 650-655
    • Robertson, M.P.1    Ellington, A.D.2
  • 12
    • 41949098095 scopus 로고    scopus 로고
    • Improved aptazyme design and in vivo screening enable riboswitching in bacteria
    • Wieland M, Hartig JS (2008) Improved aptazyme design and in vivo screening enable riboswitching in bacteria. Angew Chem Int Ed Engl 47: 2604-2607.
    • (2008) Angew Chem Int Ed Engl , vol.47 , pp. 2604-2607
    • Wieland, M.1    Hartig, J.S.2
  • 13
    • 65249122814 scopus 로고    scopus 로고
    • Artificial ribozyme switches containing natural riboswitch aptamer domains
    • Wieland M, Benz A, Klauser B, Hartig JS (2009) Artificial ribozyme switches containing natural riboswitch aptamer domains. Angew Chem Int Ed Engl 48: 2715-2718.
    • (2009) Angew Chem Int Ed Engl , vol.48 , pp. 2715-2718
    • Wieland, M.1    Benz, A.2    Klauser, B.3    Hartig, J.S.4
  • 14
    • 35448990907 scopus 로고    scopus 로고
    • A modular and extensible RNA-based generegulatory platform for engineering cellular function
    • Win MN, Smolke CD (2007) A modular and extensible RNA-based generegulatory platform for engineering cellular function. Proc Natl Acad Sci U S A 104: 14283-14288.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 14283-14288
    • Win, M.N.1    Smolke, C.D.2
  • 15
    • 54249113318 scopus 로고    scopus 로고
    • Higher-order cellular information processing with synthetic RNA devices
    • Win MN, Smolke CD (2008) Higher-order cellular information processing with synthetic RNA devices. Science 322: 456-460.
    • (2008) Science , vol.322 , pp. 456-460
    • Win, M.N.1    Smolke, C.D.2
  • 16
    • 66249084560 scopus 로고    scopus 로고
    • Beisel CL, Smolke CD (2009) Design principles for riboswitch function. PLoS Comput Biol 5: e1000363.
    • Beisel CL, Smolke CD (2009) Design principles for riboswitch function. PLoS Comput Biol 5: e1000363.
  • 17
    • 1642586299 scopus 로고    scopus 로고
    • Control of gene expression by a natural metabolite-responsive ribozyme
    • Winkler WC, Nahvi A, Roth A, Collins JA, Breaker RR (2004) Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428: 281-286.
    • (2004) Nature , vol.428 , pp. 281-286
    • Winkler, W.C.1    Nahvi, A.2    Roth, A.3    Collins, J.A.4    Breaker, R.R.5
  • 18
    • 37249040135 scopus 로고    scopus 로고
    • Mechanism of mRNA destabilization by the glmS ribozyme
    • Collins JA, Irnov I, Baker S, Winkler WC (2007) Mechanism of mRNA destabilization by the glmS ribozyme. Genes Dev 21: 3356-3368.
    • (2007) Genes Dev , vol.21 , pp. 3356-3368
    • Collins, J.A.1    Irnov, I.2    Baker, S.3    Winkler, W.C.4
  • 19
    • 33846279049 scopus 로고    scopus 로고
    • Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor
    • Cochrane JC, Lipchock SV, Strobel SA (2007) Structural investigation of the GlmS ribozyme bound to Its catalytic cofactor. Chem Biol 14: 97-105.
    • (2007) Chem Biol , vol.14 , pp. 97-105
    • Cochrane, J.C.1    Lipchock, S.V.2    Strobel, S.A.3
  • 20
    • 4644275337 scopus 로고    scopus 로고
    • Exogenous control of mammalian gene expression through modulation of RNA self-cleavage
    • Yen L, Svendsen J, Lee JS, Gray JT, Magnier M, et al. (2004) Exogenous control of mammalian gene expression through modulation of RNA self-cleavage. Nature 431: 471-476.
    • (2004) Nature , vol.431 , pp. 471-476
    • Yen, L.1    Svendsen, J.2    Lee, J.S.3    Gray, J.T.4    Magnier, M.5
  • 21
    • 33745587550 scopus 로고    scopus 로고
    • Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay
    • Meaux S, Van Hoof A (2006) Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay. RNA 12: 1323-1337.
    • (2006) RNA , vol.12 , pp. 1323-1337
    • Meaux, S.1    Van Hoof, A.2
  • 22
    • 0030865308 scopus 로고    scopus 로고
    • Kinetics of hairpin ribozyme cleavage in yeast
    • Donahue CP, Fedor MJ (1997) Kinetics of hairpin ribozyme cleavage in yeast. RNA 3: 961-973.
    • (1997) RNA , vol.3 , pp. 961-973
    • Donahue, C.P.1    Fedor, M.J.2
  • 24
    • 0043009734 scopus 로고    scopus 로고
    • Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
    • Khvorova A, Lescoute A, Westhof E, Jayasena SD (2003) Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nat Struct Biol 10: 708-712.
    • (2003) Nat Struct Biol , vol.10 , pp. 708-712
    • Khvorova, A.1    Lescoute, A.2    Westhof, E.3    Jayasena, S.D.4
  • 25
    • 0028224199 scopus 로고
    • High-resolution molecular discrimination by RNA
    • Jenison RD, Gill SC, Pardi A, Polisky B (1994) High-resolution molecular discrimination by RNA. Science 263: 1425-1429.
    • (1994) Science , vol.263 , pp. 1425-1429
    • Jenison, R.D.1    Gill, S.C.2    Pardi, A.3    Polisky, B.4
  • 26
    • 6044230047 scopus 로고
    • The metabolism of methylpurines by Escherichia coli. I. Tracer studies
    • Koch AL (1956) The metabolism of methylpurines by Escherichia coli. I. Tracer studies. J Biol Chem 219: 181-188.
    • (1956) J Biol Chem , vol.219 , pp. 181-188
    • Koch, A.L.1
  • 28
    • 33847375887 scopus 로고    scopus 로고
    • Computational selection of nucleic acid biosensors via a slip structure model
    • Hall B, Hesselberth JR, Ellington AD (2007) Computational selection of nucleic acid biosensors via a slip structure model. Biosens Bioelectron 22: 1939-1947.
    • (2007) Biosens Bioelectron , vol.22 , pp. 1939-1947
    • Hall, B.1    Hesselberth, J.R.2    Ellington, A.D.3
  • 29
    • 54949106632 scopus 로고    scopus 로고
    • Model-guided design of ligand-regulated RNAi for programmable control of gene expression
    • Beisel CL, Bayer TS, Hoff KG, Smolke CD (2008) Model-guided design of ligand-regulated RNAi for programmable control of gene expression. Mol Syst Biol 4: 224.
    • (2008) Mol Syst Biol , vol.4 , pp. 224
    • Beisel, C.L.1    Bayer, T.S.2    Hoff, K.G.3    Smolke, C.D.4
  • 30
    • 58149085388 scopus 로고    scopus 로고
    • Leakage and slow allostery limit performance of single drug-sensing aptazyme molecules based on the hammerhead ribozyme
    • de Silva C, Walter NG (2009) Leakage and slow allostery limit performance of single drug-sensing aptazyme molecules based on the hammerhead ribozyme. RNA 15: 76-84.
    • (2009) RNA , vol.15 , pp. 76-84
    • de Silva, C.1    Walter, N.G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.