메뉴 건너뛰기




Volumn , Issue , 2009, Pages 424-428

Bayesian classifier for anchored protein sorting discovery

Author keywords

Bayesian classifier; Motif discovery; Protein sorting motif; Sorting signals

Indexed keywords

BAYESIAN CLASSIFIER; MOTIF DISCOVERY; PROTEIN MOTIFS; PROTEIN SORTING; REGULATORY SIGNALS; SORTING SIGNALS; TARGET LOCATION; WEIGHT MATRICES;

EID: 74549115820     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBM.2009.43     Document Type: Conference Paper
Times cited : (4)

References (13)
  • 1
    • 0029079118 scopus 로고
    • A new type of signal peptide: Central role of a twin-arginine motif in transfer signals for the delta pH-dependent thylakoidal protein translocase
    • A.M.Chaddock, A.Mant, I.Karnauchov, S.Brink, R.G.Herrmann, R.B.Klosgen, and C.Robinson, A new type of signal peptide: central role of a twin-arginine motif in transfer signals for the delta pH-dependent thylakoidal protein translocase. EMBO J. 14 (1995) 2715-2722.
    • (1995) EMBO J , vol.14 , pp. 2715-2722
    • Chaddock, A.M.1    Mant, A.2    Karnauchov, I.3    Brink, S.4    Herrmann, R.G.5    Klosgen, R.B.6    Robinson, C.7
  • 2
    • 0025250145 scopus 로고
    • NPXY, a sequence often found in cytoplasmic tails, is required for coated pitmediated internalization of the low density lipoprotein receptor
    • W.J.Chen, J.L.Goldstein, and M.S.Brown, NPXY, a sequence often found in cytoplasmic tails, is required for coated pitmediated internalization of the low density lipoprotein receptor. J.Biol.Chem. 265 (1990) 3116-3123.
    • (1990) J.Biol.Chem , vol.265 , pp. 3116-3123
    • Chen, W.J.1    Goldstein, J.L.2    Brown, M.S.3
  • 4
    • 0346801873 scopus 로고    scopus 로고
    • M.A.Harris, J.Clark, A.Ireland, J.Lomax, M.Ashburner, R.Foulger, K.Eilbeck, S.Lewis, B.Marshall, C.Mungall, J.Richter, G.M.Rubin, J.A.Blake, C.Bult, M.Dolan, H.Drabkin, J.T.Eppig, D.P.Hill, L.Ni, M.Ringwald, R.Balakrishnan, J.M.Cherry, K.R.Christie, M.C.Costanzo, S.S.Dwight, S.Engel, D.G.Fisk, J.E.Hirschman, E.L.Hong, R.S.Nash, A.Sethuraman, C.L.Theesfeld, D.Botstein, K.Dolinski, B.Feierbach, T.Berardini, S.Mundodi, S.Y.Rhee, R.Apweiler, D.Barrell, E.Camon, E.Dimmer, V.Lee, R.Chisholm, P.Gaudet, W.Kibbe, R.Kishore, E.M.Schwarz, P.Sternberg, M.Gwinn, L.Hannick, J.Wortman, M.Berriman, V.Wood, C.N.de la, P.Tonellato, P.Jaiswal, T.Seigfried, and R.White, The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32 (2004) D258-D261.
    • M.A.Harris, J.Clark, A.Ireland, J.Lomax, M.Ashburner, R.Foulger, K.Eilbeck, S.Lewis, B.Marshall, C.Mungall, J.Richter, G.M.Rubin, J.A.Blake, C.Bult, M.Dolan, H.Drabkin, J.T.Eppig, D.P.Hill, L.Ni, M.Ringwald, R.Balakrishnan, J.M.Cherry, K.R.Christie, M.C.Costanzo, S.S.Dwight, S.Engel, D.G.Fisk, J.E.Hirschman, E.L.Hong, R.S.Nash, A.Sethuraman, C.L.Theesfeld, D.Botstein, K.Dolinski, B.Feierbach, T.Berardini, S.Mundodi, S.Y.Rhee, R.Apweiler, D.Barrell, E.Camon, E.Dimmer, V.Lee, R.Chisholm, P.Gaudet, W.Kibbe, R.Kishore, E.M.Schwarz, P.Sternberg, M.Gwinn, L.Hannick, J.Wortman, M.Berriman, V.Wood, C.N.de la, P.Tonellato, P.Jaiswal, T.Seigfried, and R.White, The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 32 (2004) D258-D261.
  • 5
    • 34548761859 scopus 로고    scopus 로고
    • Comparative analysis of regulatory motif discovery tools for transcription factor binding sites
    • W.Wei and X.D.Yu, Comparative analysis of regulatory motif discovery tools for transcription factor binding sites. Genomics Proteomics Bioinformatics 5 (2007) 131-142.
    • (2007) Genomics Proteomics Bioinformatics , vol.5 , pp. 131-142
    • Wei, W.1    Yu, X.D.2
  • 6
    • 33747823564 scopus 로고    scopus 로고
    • discovering and analyzing DNA and protein sequence motifs
    • MEME
    • T.L.Bailey, N.Williams, C.Misleh, and W.W.Li, MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 34 (2006) W369-W373.
    • (2006) Nucleic Acids Res , vol.34
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 7
    • 0031684427 scopus 로고    scopus 로고
    • Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm
    • I.Rigoutsos and A.Floratos, Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm. Bioinformatics 14 (1998) 55-67.
    • (1998) Bioinformatics , vol.14 , pp. 55-67
    • Rigoutsos, I.1    Floratos, A.2
  • 8
    • 0029079118 scopus 로고
    • A new type of signal peptide: Central role of a twin-arginine motif in transfer signals for the delta pH-dependent thylakoidal protein translocase
    • A.M.Chaddock, A.Mant, I.Karnauchov, S.Brink, R.G.Herrmann, R.B.Klosgen, and C.Robinson, A new type of signal peptide: central role of a twin-arginine motif in transfer signals for the delta pH-dependent thylakoidal protein translocase. EMBO J. 14 (1995) 2715-2722.
    • (1995) EMBO J , vol.14 , pp. 2715-2722
    • Chaddock, A.M.1    Mant, A.2    Karnauchov, I.3    Brink, S.4    Herrmann, R.G.5    Klosgen, R.B.6    Robinson, C.7
  • 9
    • 0032435519 scopus 로고    scopus 로고
    • Targeting of thylakoid proteins by the delta pH-driven twin-arginine translocation pathway requires a specific signal in the hydrophobic domain in conjunction with the twin-arginine motif
    • S.Brink, E.G.Bogsch, W.R.Edwards, P.J.Hynds, and C.Robinson, Targeting of thylakoid proteins by the delta pH-driven twin-arginine translocation pathway requires a specific signal in the hydrophobic domain in conjunction with the twin-arginine motif. FEBS Lett. 434 (1998) 425-430.
    • (1998) FEBS Lett , vol.434 , pp. 425-430
    • Brink, S.1    Bogsch, E.G.2    Edwards, W.R.3    Hynds, P.J.4    Robinson, C.5
  • 10
    • 17544383706 scopus 로고    scopus 로고
    • A di-hydrophobic Leu-Val motif regulates the basolateral localization of CD44 in polarized Madin-Darby canine kidney epithelial cells
    • H.Sheikh and C.M.Isacke, A di-hydrophobic Leu-Val motif regulates the basolateral localization of CD44 in polarized Madin-Darby canine kidney epithelial cells. J.Biol.Chem. 271 (1996) 12185-12190.
    • (1996) J.Biol.Chem , vol.271 , pp. 12185-12190
    • Sheikh, H.1    Isacke, C.M.2
  • 11
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • W.Li and A.Godzik, Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22 (2006) 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 12
    • 14644395585 scopus 로고    scopus 로고
    • Twin-arginine-specific protein export in Escherichia coli
    • M.Muller, Twin-arginine-specific protein export in Escherichia coli. Res.Microbiol. 156 (2005) 131-136.
    • (2005) Res.Microbiol , vol.156 , pp. 131-136
    • Muller, M.1
  • 13
    • 0036175122 scopus 로고    scopus 로고
    • Charged amino acids conserved in the aromatic acid/H+ symporter family of permeases are required for 4-hydroxybenzoate transport by PcaK from Pseudomonas putida
    • J.L.Ditty and C.S.Harwood, Charged amino acids conserved in the aromatic acid/H+ symporter family of permeases are required for 4-hydroxybenzoate transport by PcaK from Pseudomonas putida. J.Bacteriol. 184 (2002) 1444-1448.
    • (2002) J.Bacteriol , vol.184 , pp. 1444-1448
    • Ditty, J.L.1    Harwood, C.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.