Genomewide analysis of gene expression associated with Tcof1 in mouse neuroblastoma

Biochemical and Biophysical Research Communications

Volumn 325, Issue 1, 2004, Pages 124-132

  Mogass, Michael ^a   York, Timothy P ^a   Li, Lin ^a   Rujirabanjerd, Sinitdhorn ^b   Shiang, Rita ^a  

^a Virginia Cmw Univ Medical Center   (United States)

^b PRINCE OF SONGKLA UNIVERSITY   (Thailand)

Author keywords

Microarray; Neuroblastoma; Treacher Collins syndrome

Indexed keywords

ANIMAL MODEL; ARTICLE; CELL DIFFERENTIATION; CELL PROLIFERATION; CONTROLLED STUDY; DISEASE ASSOCIATION; GENE EXPRESSION; GENE IDENTIFICATION; GENOME ANALYSIS; MOUSE; NEUROBLASTOMA; NEUROBLASTOMA CELL; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN SYNTHESIS;

ANIMALS; CELL LINE, TUMOR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENOME; MANDIBULOFACIAL DYSOSTOSIS; MICE; NEUROBLASTOMA; NUCLEAR PROTEINS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHOSPHOPROTEINS; RNA, SMALL INTERFERING;

MURINAE;

EID: 7444246129     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2004.10.004     Document Type: Article

References (49)

1. E.D. Kay, and C.N. Kay Dysmorphogenesis of the mandible, zygoma, and middle ear ossicles in hemifacial microsomia and mandibulofacial dysostosis Am. J. Med. Genet. 32 1989 27 31
2. The Treacher Collins Syndrome Collaborative Group, Positional cloning of a gene involved in the pathogenesis of Treacher Collins syndrome, Nat. Genet. 12 (1996) 130-136
3. J. Dixon, K. Hovanes, R. Shiang, and M.J. Dixon Sequence analysis, identification of evolutionary conserved motifs and expression analysis of murine tcof1 provide further evidence for a potential function for the gene and its human homologue, TCOF1 Hum. Mol. Genet. 6 1997 727 737
4. C.A. Wise, L.C. Chiang, W.A. Paznekas, M. Sharma, M.M. Musy, J.A. Ashley, M. Lovett, and E.W. Jabs TCOF1 gene encodes a putative nucleolar phosphoprotein that exhibits mutations in Treacher Collins Syndrome throughout its coding region Proc. Natl. Acad. Sci. USA 94 1997 3110 3115
5. U.T. Meier, and G. Blobel A nuclear localization signal binding protein in the nucleolus Cell Biol. 111 1990 2235 2245
6. T. Hayano, M. Yanagida, Y. Yamauchi, T. Shinkawa, T. Isobe, and N. Takahashi Proteomic analysis of human Nop56p-associated pre-ribosomal ribonucleoprotein complexes. Possible link between Nop56p and the nucleolar protein treacle responsible for Treacher Collins syndrome J. Biol. Chem. 278 2003 34309 34319
7. K.L. Marsh, J. Dixon, and M.J. Dixon Mutations in the Treacher Collins syndrome gene lead to mislocalization of the nucleolar protein treacle Hum. Mol. Genet. 7 1998 1795 1800
8. S.T. Winokur, and R. Shiang The Treacher Collins syndrome (TCOF1) gene product, treacle, is targeted to the nucleolus by signals in its C-terminus Hum. Mol. Genet. 7 1998 1947 1952
9. B.C. Valdez, D. Henning, R.B. So, J. Dixon, and M.J. Dixon The Treacher Collins syndrome (TCOF1) gene product is involved in ribosomal DNA gene transcription by interacting with upstream binding factor Proc. Natl. Acad. Sci. USA 101 2004 10709 10714
10. M.O. Olson, M. Dundr, and A. Szebeni The nucleolus: an old factory with unexpected capabilities Trends Cell Biol. 10 2000 189 196
11. D. Ruggero, and P.P. Pandolfi Does the ribosome translate cancer? Nat. Rev. Cancer 3 2003 179 192
12. J. Dixon, C. Brakebusch, R. Fassler, and M.J. Dixon Increased levels of apoptosis in the prefusion neural folds underlie the craniofacial disorder, Treacher Collins syndrome Hum. Mol. Genet. 9 2000 1473 1480
13. T.K. Smith, K.D. Nylander, and N.F. Schor The roles of mitotic arrest and protein synthesis in induction of apoptosis and differentiation in neuroblastoma cells in culture Brain Res. Dev. Brain Res. 105 1998 175 180
14. G. Melino, M. Draoui, L. Bellincampi, F. Bernassola, S. Bernardini, M. Piacentini, U. Reichert, and P. Cohen Retinoic acid receptors alpha and gamma mediate the induction of "tissue" transglutaminase activity and apoptosis in human neuroblastoma cells Exp. Cell Res. 235 1997 55 61
15. Y. Liu, M. Encinas, J.X. Comella, M. Aldea, and C. Gallego Basic helix-loop-helix proteins bind to TrkB and p21 (Cip1) promoters linking differentiation and cell cycle arrest in neuroblastoma cells Mol. Cell. Biol. 24 2004 2662 2672
16. Y. Yuza, M. Agawa, M. Matsuzaki, H. Yamada, and M. Urashima Gene and protein expression profiling during differentiation of neuroblastoma cells triggered by 13-cis retinoic acid J. Pediatr. Hematol. Oncol. 25 2003 715 720
17. F. Czauderna, A. Santel, M. Hinz, M. Fechtner, B. Durieux, G. Fisch, F. Leenders, W. Arnold, K. Giese, A. Klippel, and J. Kaufmann Inducible shRNA expression for application in a prostate cancer mouse model Nucleic Acids Res. 31 2003 e127
18. A. Fire, S. Xu, M.K. Montgomery, S.A. Kostas, S.E. Driver, and C.C. Mello Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature 391 1998 806 811
19. S.M. Elbashir, J. Martinez, A. Patkaniowska, W. Lendeckel, and T. Tuschl Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate EMBO J. 20 2001 6877 6888
20. A.M. Krichevsky, and K.S. Kosik RNAi functions in cultured mammalian neurons Proc. Natl. Acad. Sci. USA 99 2002 11926 11929
21. C. Koenigsberger, S. Chiappa, and S. Brimijoin Neurite differentiation is modulated in neuroblastoma cells engineered for altered acetylcholinesterase expression J. Neurochem. 69 1997 1389 1397
22. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
23. R.A. Irizarry, B. Hobbes, F. Collin, Y.D. Beazer-Barclay, K.J. Antonellis, U. Scherf, and T.P. Speed Exploration, normalization, and summaries of high density oligonucleotide array probe level data Biostatistics 4 2003 249 264
24. R. Ihaka, and R. Gentleman R: a language for data analysis and graphics J. Comput. Graphical Stat. 5 1996 299 314
25. V.G. Tusher, R. Tibshirani, and G. Chu Significance analysis of microarrays applied to the ionizing radiation response Proc. Natl. Acad. Sci. USA 98 2001 5116 5121
26. M.B. Eisen, P.T. Spellman, P.O. Brown, and D. Botstein Cluster analysis and display of genome-wide expression patterns Proc. Natl. Acad. Sci. USA 95 1998 14863 14868
27. D. Schubert, S. Humphreys, C. Baroni, and M. Cohn In vitro differentiation of a mouse neuroblastoma Proc. Natl. Acad. Sci. USA 64 1969 316 323
28. I.I. Kruman, M.A. Kostenko, R.Ya. Gordon, V.I. Popov, and S.R. Umansky Differentiation and apoptosis of murine neuroblastoma cells N1E115 Biochem. Biophys. Res. Commun. 191 1993 1309 1328
29. K.V. Sharma, C. Koenigsberger, S. Brimijoin, and J.W. Bigbee Direct evidence for an adhesive function in the noncholinergic role of acetylcholinesterase in neurite outgrowth J. Neurosci. Res. 63 2001 165 175
30. M.M. Matzuk, T.R. Kumar, and A. Bradley Different phenotypes for mice deficient in either activins or activin receptor type II Nature 374 1995 356 360
31. T. Suzuki, J. Takeuchi, K. Koshiba-Takeuchi, and T. Ogura Tbx genes specify posterior digit identity through Shh and BMP signaling Dev. Cell 6 2004 43 53
32. J.J.L. Jacobs, P. Keblusek, E. Robanus-Maandag, P. Kristel, M. Lingbeek, P.M. Nederlof, T. van Welsem, M.J. van de Vijver, E.Y. Koh, G.Q. Daley, and M. van Lohuizen Senescence bypass screen identifies TBX2, which represses Cdkn2a (p19ARF) and is amplified in a subset of human breast cancers Nat. Genet. 26 2000 291 299
33. K. Harbers, U. Muller, A. Grams, E. Li, R. Jaenisch, and T. Franz Provirus integration into a gene encoding a ubiquitin-conjugating enzyme results in a placental defect and embryonic lethality Proc. Natl. Acad. Sci. USA 93 1996 12412 12417
34. U. Nuber, S. Schwarz, P. Kaiser, R. Schneider, and M. Scheffner Cloning of human ubiquitin-conjugating enzymes UbcH6 and UbcH7 (E2-F1) and characterization of their interaction with E6-AP and RSP5 J. Biol. Chem. 271 1996 2795 2800
35. K. Tateishi, M. Omata, K. Tanaka, and T. Chiba The NEDD8 system is essential for cell cycle progression and morphogenetic pathway in mice J. Cell Biol. 155 2001 571 579
36. G.J. Clark, L.A. Quilliam, M.M. Hisaka, and C.J. Der Differential antagonism of Ras biological activity by catalytic and Src homology domains of Ras GTPase activation protein Proc. Natl. Acad. Sci. USA 90 1993 4887 4891
37. J.B. Gibbs, M.S. Marshall, E.M. Scolnick, R.A. Dixon, and U.S. Vogel Modulation of guanine nucleotides bound to Ras in NIH3T3 cells by oncogenes, growth factors, and the GTPase activating protein (GAP) J. Biol. Chem. 265 1990 20437 20442
38. C. Isaac, K.L. Marsh, A. Paznekas, J. Dixon, M.J. Dixon, E. Wang Jabs, and U.T. Meier Characterization of the nucleolar gene product, treacle, in Treacher Collins syndrome Mol. Biol. Cell 11 2000 3061 3071
39. D. Piquemal, D. Joulia, P. Balaguer, A. Basset, J. Marti, and T. Commes Differential expression of the RTP/Drg1/Ndrg1 gene product in proliferating and growth arrested cells Biochim. Biophys. Acta 1450 1999 364 373
40. N. Van Belzen, W.N.M. Dinjens, M.P.G. Diesveld, N.A. Groen, A.C.J. van der Made, Y. Nozawa, R. Vliestra, J. Trapman, and F.T. Bosman A novel gene which is up-regulated during colon epithelial cell differentiation and down-regulated in colorectal neoplasms Lab. Invest. 77 1997 85 92
41. B. Xu, L. Lin, and N.S. Rote Identification of a stress-induced protein during human trophoblast differentiation by differential display analysis Biol. Reprod. 61 1999 681 686
42. S.K. Kurdistani, P. Arizti, C.L. Reimer, M.M. Sugrue, S.A. Aaronson, and S.W. Lee Inhibition of tumor cell growth by RTP/rit42 and its responsiveness to p53 and DNA damage Cancer Res. 58 1998 4439 4444
43. 2+ compounds Cancer Res. 58 1998 2182 2189
44. L. Kalaydjieva, D. Gresham, R. Gooding, L. Heather, F. Baas, R. de Jonge, K. Blechschmidt, D. Angelicheva, D. Chandler, P. Worsley, A. Rosenthal, R.H. King, and P.K. Thomas N-myc downstream-regulated gene 1 is mutated in hereditary motor and sensory neuropathy-Lom Am. J. Hum. Genet. 67 2000 47 58
45. G. Chen, R. Ray, D. Dubik, L. Shi, J. Cizeau, C. Bleackley, S. Saxena, R.D. Gietz, and A.H. Greenberg The E1B19K/Bcl-2-binding protein Nip3 is a dimeric mitochondrial protein that activates apoptosis J. Exp. Med. 186 1997 1975 1983
46. T. Imazu, S. Shimizu, S. Tagami, M. Matsushima, Y. Nakamura, T. Miki, A. Okuyama, and Y. Tsujimoto Bcl-2/E1B 19 kDa-interacting protein 3-like protein (Bnip3L) interacts with bcl-2/Bcl-xL and induces apoptosis by altering mitochondrial membrane permeability Oncogene 18 1999 4523 4529
47. Y. Yang, E. Spitzer, N. Kenney, W. Zschiesche, M. Li, A. Kromminga, T. Muller, F. Spener, A. Lezius, J.H. Veerkamp, G.H. Smith, D.S. Salomon, and R. Grosse Members of the fatty acid binding protein family are differentiation factors for the mammary gland J. Cell Biol. 127 1994 1097 1109
48. T. Yagi, E. Baroja-Fernandez, R. Yamamoto, F.J. Munoz, T. Akazawa, K.S. Hong, and J. Pozueta-Romero Cloning, expression and characterization of a mammalian Nudix hydrolase-like enzyme that cleaves the pyrophosphate bond of UDP-glucose Biochem. J. 370 2003 409 415
49. T. Yoneda, M. Sato, M. Mitsuyo, and H. Takagi Identification of a novel adenylate kinase system in the brain: cloning of the fourth adenylate kinase Mol. Brain Res. 62 1998 187 195