메뉴 건너뛰기




Volumn 27, Issue 3, 2004, Pages 225-239

A hidden markov modeling approach for admixture mapping based on case-control data

Author keywords

Admixed population; Ancestry association; Ancestry relative risk; Haplotype

Indexed keywords

ALLELE; ARTICLE; CASE CONTROL STUDY; CHROMOSOME NOR; ETHNOLOGY; GENE MAPPING; GENOTYPE; HAPLOTYPE; HUMAN; HYBRID; MARKER GENE; POPULATION GENETICS; PROBABILITY; SIMULATION; STATISTICAL MODEL;

EID: 7444241441     PISSN: 07410395     EISSN: None     Source Type: Journal    
DOI: 10.1002/gepi.20021     Document Type: Article
Times cited : (24)

References (23)
  • 1
    • 0028053012 scopus 로고
    • Linkage disequilibrium in admixed populations: Applications in gene mapping
    • Briscoe D, Stephens JC, O'Brien SJ. 1994. Linkage disequilibrium in admixed populations: applications in gene mapping. J Hered 85:59-63.
    • (1994) J Hered , vol.85 , pp. 59-63
    • Briscoe, D.1    Stephens, J.C.2    O'Brien, S.J.3
  • 2
    • 0024209791 scopus 로고
    • Admixture as a tool for finding linked genes and detecting that differences from allele association between locis
    • Chakraborty R, Weiss KM. 1988. Admixture as a tool for finding linked genes and detecting that differences from allele association between locis. Proc Natl Acad Sci USA 85:9119-9123.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 9119-9123
    • Chakraborty, R.1    Weiss, K.M.2
  • 3
    • 0041564051 scopus 로고    scopus 로고
    • Markers informative for ancestry demontrate consistent mega base-length linkage disequilibrium in the African American population
    • Collins-Schramm HE, Chima B, Operario DJ, Criswell L, Seldin MF. 2002a. Markers informative for ancestry demontrate consistent mega base-length linkage disequilibrium in the African American population. Human Genet 113:211-219.
    • (2002) Human Genet , vol.113 , pp. 211-219
    • Collins-Schramm, H.E.1    Chima, B.2    Operario, D.J.3    Criswell, L.4    Seldin, M.F.5
  • 5
    • 0000857469 scopus 로고    scopus 로고
    • Genomic control for association studies: A semiparametric test to detect excess-haplotype sharing
    • Devlin B, Roeder K, Wasserman L. 2000. Genomic control for association studies: a semiparametric test to detect excess-haplotype sharing. Biostatistics 1:369-387.
    • (2000) Biostatistics , vol.1 , pp. 369-387
    • Devlin, B.1    Roeder, K.2    Wasserman, L.3
  • 6
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK. 2003. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 7
    • 0028877463 scopus 로고
    • Genetic dissection of complex traits: Guidelines for interpreting and reporting linkage results
    • Lander ES, Kruglyak L. 1995. Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results. Nature Genet 11:241-247.
    • (1995) Nature Genet , vol.11 , pp. 241-247
    • Lander, E.S.1    Kruglyak, L.2
  • 8
    • 0003598532 scopus 로고    scopus 로고
    • Hidden markov and other models for discrete-valued time series
    • MacDonald IL, Zucchini W. 1997. Hidden markov and other models for discrete-valued time series. Chapman and Hall, 1997.
    • (1997) Chapman and Hall , vol.1997
    • MacDonald, I.L.1    Zucchini, W.2
  • 9
    • 0032231748 scopus 로고    scopus 로고
    • Mapping genes that underlie ethnic differences in disease risk: Methods for detecting linkage in admixed populations, by conditioning on parental admixture
    • McKeigue PM. 1998. Mapping genes that underlie ethnic differences in disease risk: methods for detecting linkage in admixed populations, by conditioning on parental admixture. Am J Hum Genet 63:241-251.
    • (1998) Am J Hum Genet , vol.63 , pp. 241-251
    • McKeigue, P.M.1
  • 10
    • 0033930943 scopus 로고    scopus 로고
    • Estimation of admixture and detection of linkage in admixed populations by a Bayesian approach: Application to African-American populations
    • McKeigue PM, Carpenter JR, Parra EJ, Shriver MD. 2000. Estimation of admixture and detection of linkage in admixed populations by a Bayesian approach: application to African-American populations. Ann Hum Genet 64:171-186.
    • (2000) Ann Hum Genet , vol.64 , pp. 171-186
    • McKeigue, P.M.1    Carpenter, J.R.2    Parra, E.J.3    Shriver, M.D.4
  • 11
    • 0033910724 scopus 로고    scopus 로고
    • Bayesian Fine-scale mapping of disease loci, by hidden markov models
    • Morris AP, Whittaker JC, Balding DJ. 2000. Bayesian Fine-scale mapping of disease loci, by hidden markov models. Am J Hum Genet 67:155-169.
    • (2000) Am J Hum Genet , vol.67 , pp. 155-169
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 12
    • 84888975965 scopus 로고    scopus 로고
    • Significance levels in complex inheritance
    • Morton NE. 1998. Significance levels in complex inheritance. Am J Hum Genet 7:217-318.
    • (1998) Am J Hum Genet , vol.7 , pp. 217-318
    • Morton, N.E.1
  • 15
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 16
    • 0024610919 scopus 로고
    • A Tutorial on hidden Markov models and selected applications in speech recognition
    • Rabiner LR. 1989. A Tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE 77:257-285.
    • (1989) Proc IEEE , vol.77 , pp. 257-285
    • Rabiner, L.R.1
  • 18
    • 0028139346 scopus 로고
    • Genetic epidemiology of multiple sclerosis: A survey
    • Sadovnick AD. 1994. Genetic epidemiology of multiple sclerosis: A survey. Ann Neurol 36(Suppl 2):S194-203.
    • (1994) Ann Neurol , vol.36 , Issue.2 SUPPL.
    • Sadovnick, A.D.1
  • 19
    • 3042616060 scopus 로고    scopus 로고
    • Putative ancestral origins of chromosomal segments in individual African Americans: Implications for admixture mapping
    • Seldin MF, Morii T, Collins-Schramm EC, Chima B, Kittles R, Criswell LA, Li H. 2004. Putative ancestral origins of chromosomal segments in individual African Americans: Implications for admixture mapping. Genome Res 14:1076-1084.
    • (2004) Genome Res , vol.14 , pp. 1076-1084
    • Seldin, M.F.1    Morii, T.2    Collins-Schramm, E.C.3    Chima, B.4    Kittles, R.5    Criswell, L.A.6    Li, H.7
  • 22
    • 0028001245 scopus 로고
    • Mapping by admixture linkage disequilibrium in human populations: Limits and guidelines
    • Stephens JC, Briscoe D, O'Brien SJ. 1994. Mapping by admixture linkage disequilibrium in human populations: limits and guidelines. Am J Hum Genet 55:809-824.
    • (1994) Am J Hum Genet , vol.55 , pp. 809-824
    • Stephens, J.C.1    Briscoe, D.2    O'Brien, S.J.3
  • 23
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989.
    • (2001) Am J Hum Genet , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.