Microarray method to monitor 40 intestinal bacterial species in the study of azo dye reduction

Biosensors and Bioelectronics

Volumn 20, Issue 4, 2004, Pages 699-705

  Wang, Rong Fu ^a   Chen, Huizhong ^a   Paine, Donald D ^a   Cerniglia, Carl E ^a  

^a NATIONAL CENTER FOR TOXICOLOGICAL RESEARCH   (United States)

Author keywords

Azo dye reduction; Human intestinal microflora; Microarray

Indexed keywords

ARRAYS; AZO DYES; CELL CULTURE; METABOLISM; PIGMENTS; REDUCTION;

CARCINOGENIC COMPOUNDS; MICROARRAYS; PIGMENTATION;

BACTERIA;

AZO DYE;

ARTICLE; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; DNA MICROARRAY; FECES CULTURE; HUMAN; INTESTINE FLORA; LITERATURE; NONHUMAN;

AZO COMPOUNDS; BACTERIA; COLORING AGENTS; FECES; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; HUMANS; INTESTINES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OXIDATION-REDUCTION; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS);

EID: 7444230929     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2004.04.011     Document Type: Article

References (28)

1. Baumler W., Eibler E.T., Hohenleutner U., Sens B., Sauer J., Landthaler M. Q-switched laser and tattoo pigment: first results of the chemical and photophysical analysis of 41 compounds. Lasers Surg. Med. 26:2000;13-21
2. Call D.R., Brockman F.J., Chandler D.P. Detection and genetyping Escherichia coli O157:H7 using multiplexed PCR and nucleic acid microarrays. Int. J. Food Microbiol. 67:2001;71-80
3. Carman R.J., Van Tassell R.L., Wilkins T.D. The normal intestinal microflora: ecology, variability and stability. Vet. Hum. Toxicol. 35(Suppl. 1):1993;11-14
4. Cerniglia C.E., Freeman J.P., Franklin W., Pack L.D. Metabolism of azo dyes derived from benzidine, 3,3′-dimethylbenzidine and 3,3′-dimethoxybenzidine to potentially carcinogenic aromatic amines by intestinal bacteria. Carcinogenesis. 3:1982;1255-1260
5. Cerniglia C.E., Kotarski S. Evaluation of veterinary drug residues in food for their potential to affect human intestinal microflora. Regul. Toxicol. Pharmacol. 29:1999;238-261
6. Cerniglia C.E., Howard P.C., Fu P.P., Franklin W. Metabolism of nitropolycyclic aromatic hydrocarbons by human intestinal microflora. Biochem. Biophys. Res. Comm. 123:1984;262-270
7. Chadwick R.W., George S.E., Claxton L.R. Role of gastrointestinal mucosa and microflora in the, bioactivation of dietary and environmental mutagens or carcinogens. Drug Metab. Rev. 24:1992;425-492
8. Chizhikov V., Rasooly A., Chumakov K., Levy D.D. Microarray analysis of microbial virulence factors. Appl. Environ. Microbiol. 67:2001;3258-3263
9. Chung K.T., Stevens S.E. Jr., Cerniglia C.E. The reduction of azo dyes by the intestinal microflora. Crit. Rev. Microbiol. 18:1992;175-190
10. Drasar, B.S., Duerden, B.I., 1991. Anaerobes in the normal flora of man. In: Duerden, B.I., Drasar, B.S. (Eds.), Anaerobes in Human Disease. Wiley-Liss, New York, NY, pp. 162-179.
11. Drasar, B.S., Roberts, A.K., 1990. Control of the large bowel microflora. In: Hill, M.J., Marsh, B.S. (Eds.), Human Microbial Ecology. CRC Press, Inc., FL, pp. 95-100.
12. Harmsen H.J., Raangs G.C., He T., Degener J.E., Welling G.W. Extensive set of 16S rRNA-based probes for detection of bacteria in human feces. Appl. Environ. Microbiol. 68:2002;2982-2990
13. Jansen G.J., Wildeboer-Veloo A.C., Tonk R.H., Franks A.H., Welling G.W. Development and validation of an automated, microscopy-based method for enumeration of groups of intestinal bacteria. J. Microbiol. Methods. 37:1999;215-221
14. Kageyama A., Benno Y. Rapid detection of human fecal Eubacterium species and related genera by nested PCR method. Microbiol. Immunol. 45:2001;315-318
15. Langendijk P.S., Schut F., Jansen G.J. Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus specific 16S rRNA targeted probes and its application in fecal samples. Appl. Environ. Microbiol. 61:1995;3069-3075
16. Matsuki T., Watanabe K., Fujimoto J., Miyamoto Y., Takada T., Matsumoto K., Oyaizu H., Tanaka R. Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces. Appl. Environ. Microbiol. 68:2002;5445-5451
17. Moore W.E.C., Holdeman L.V. Human fecal flora: the normal flora of 20 Japanese-Hawaiians. Appl. Microbiol. 27:1974;961-979
18. Moore W.E.C., Moore L.H. Intestinal floras of populations that have a high risk of colon cancer. Appl. Environ. Microbiol. 61:1995;3202-3207
19. Rafii F., Smith D.B., Benson R.W., Cerniglia C.E. Immunological homology among azoreductases from Clostridium and Eubacterium strains isolated from human intestinal microflora. J. Basic Microbiol. 32:1992;99-105
20. Sghir A., Gramet G., Suau A., Rochet V., Pochart P., Dore J. Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization. Appl. Environ. Microbiol. 66:2000;2263-2266
21. Vollaard E.J., Clasener H.A. Colonization resistance. Antimicrob. Agents Chemother. 38:1994;409-414
22. Wang R.-F., Cao W.W., Campbell W.L., Hairston L., Franklin W., Cerniglia C.E. The use of PCR to monitor the population abundance of six human intestinal bacterial species in an in vitro semicontinuous culture system. FEMS Microbiol. Lett. 124:1994;229-237
23. Wang R.-F., Cao W.W., Cerniglia C.E. PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl. Environ. Microbiol. 62:1996;1242-1247
24. Wang R.-F., Cao W.W., Cerniglia C.E. PCR detection of Ruminococcus spp. in human and animal fecal samples. Mol. Cell. Probes. 11:1997;259-265
25. Wang, R.F., Beggs, M.L., Erickson, B.D., Cerniglia, C.E., 2003. DNA microarray analysis of predominant human intestinal bacteria in fecal samples, N-193, in: Abstract of the 103rd General Meeting of the American Society for Microbiology 2003. American Society for Microbiology, Washington, DC.
26. Wang R.-F., Beggs M.L., Robertson L.H., Cerniglia C.E. Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol. Lett. 213:2002a;175-182
27. Wang R.F., Kim S.J., Robertson L.H., Cerniglia C.E. Development of a membrane-array method for the detection of human intestinal bacteria in fecal samples. Mol. Cell. Probes. 16:2002;341-350
28. Wu L., Thompson D.K., Li G., Hurt R.A., Tiedje J.M., Zhou J. Development and evaluation of functional gene arrays for detection of selected genes in the environment. Appl. Environ. Microbiol. 67:2001;5780-5790