-
1
-
-
68849093623
-
Parameter space exploration using scientific workflows
-
Intl. Conf. on Computational Science
-
D. Abramson, B. Bethwaite, C. Enticott, S. Garic, and T. Peachey. Parameter space exploration using scientific workflows. In Intl. Conf. on Computational Science, LNCS 5544, pages 104-113, 2009.
-
(2009)
LNCS
, vol.5544
, pp. 104-113
-
-
Abramson, D.1
Bethwaite, B.2
Enticott, C.3
Garic, S.4
Peachey, T.5
-
2
-
-
0033365703
-
Toward a common component architecture for high-performance scientific computing
-
R. Armstrong, D. Gannon, A. Geist, K. Keahey, S. Kohn, L. McInnes, S. Parker, and B. Smolinski. Toward a common component architecture for high-performance scientific computing. In In Intl. Sympos. on High Performance Distr. Computation, 1999.
-
(1999)
In Intl. Sympos. on High Performance Distr. Computation
-
-
Armstrong, R.1
Gannon, D.2
Geist, A.3
Keahey, K.4
Kohn, S.5
McInnes, L.6
Parker, S.7
Smolinski, B.8
-
3
-
-
35048842716
-
An ontology driven framework for data transformation in scientific workflows
-
Intl. Workshop on Data Integration in the Life Sciences DILS
-
S. Bowers and B. Ludäscher. An ontology driven framework for data transformation in scientific workflows. In Intl. Workshop on Data Integration in the Life Sciences (DILS), LNCS 2994, 2004.
-
(2004)
LNCS
, vol.2994
-
-
Bowers, S.1
Ludäscher, B.2
-
4
-
-
33646188319
-
Actor-oriented design of scientific workflows
-
Intl. Conf. on Conceptual Modeling ER
-
S. Bowers and B. Ludäscher. Actor-oriented design of scientific workflows. In Intl. Conf. on Conceptual Modeling (ER), LNCS 3716, 2005.
-
(2005)
LNCS
, vol.3716
-
-
Bowers, S.1
Ludäscher, B.2
-
5
-
-
77949574990
-
Enabling scientific workflow reuse through structured composition of dataflow and control-flow
-
Atlanta, GA, April
-
S. Bowers, B. Ludäscher, A. H. Ngu, and T. Critchlow. Enabling scientific workflow reuse through structured composition of dataflow and control-flow. In Post-ICDE Workshop on Workflow and Data Flow for Scientific Applications (SciFlow), Atlanta, GA, April 2006.
-
(2006)
Post-ICDE Workshop on Workflow and Data Flow for Scientific Applications (SciFlow)
-
-
Bowers, S.1
Ludäscher, B.2
Ngu, A.H.3
Critchlow, T.4
-
6
-
-
76849095115
-
Kepler/pPOD: Scientific workflow and provenance support for assembling the tree of life
-
S. Bowers, T. McPhillips, S. Riddle, M. Anand, and B. Ludäscher. Kepler/pPOD: Scientific workflow and provenance support for assembling the tree of life. In Intl. Provenance and Annotation Workshop (IPAW), 2008.
-
(2008)
Intl. Provenance and Annotation Workshop (IPAW)
-
-
Bowers, S.1
McPhillips, T.2
Riddle, S.3
Anand, M.4
Ludäscher, B.5
-
7
-
-
74049092898
-
-
C. Brooks, E. A. Lee, X. Liu, S. Neuendorffer, Y. Zhao, and H. Zheng. Heterogeneous concurrent modeling and design in java (1: Introduction to ptolemy ii). Technical Report No. UCB/EECS-2008-28, April 2008.
-
C. Brooks, E. A. Lee, X. Liu, S. Neuendorffer, Y. Zhao, and H. Zheng. Heterogeneous concurrent modeling and design in java (volume 1: Introduction to ptolemy ii). Technical Report No. UCB/EECS-2008-28, April 2008.
-
-
-
-
8
-
-
84892356132
-
-
Taylor et al, 33
-
P. Couvares, T. Kosar, A. Roy, J. Weber, and K. Wenger. Workflow Management in Condor, pages 357-375. In Taylor et al. [33], 2007.
-
(2007)
Workflow Management in Condor
, pp. 357-375
-
-
Couvares, P.1
Kosar, T.2
Roy, A.3
Weber, J.4
Wenger, K.5
-
9
-
-
48249115881
-
Provenance in scientific workflow systems
-
S. B. Davidson, S. C. Boulakia, A. Eyal, B. Ludäscher, T. M. McPhillips, S. Bowers, M. K. Anand, and J. Freire. Provenance in scientific workflow systems. IEEE Data Engineering Bulletin, 30(4):44-50, 2007.
-
(2007)
IEEE Data Engineering Bulletin
, vol.30
, Issue.4
, pp. 44-50
-
-
Davidson, S.B.1
Boulakia, S.C.2
Eyal, A.3
Ludäscher, B.4
McPhillips, T.M.5
Bowers, S.6
Anand, M.K.7
Freire, J.8
-
10
-
-
29644434815
-
Pegasus: A framework for mapping complex scientific workflows onto distributed systems
-
E. Deelman. Pegasus: A framework for mapping complex scientific workflows onto distributed systems. Scientific Programming, 13(3):219-237, 2005.
-
(2005)
Scientific Programming
, vol.13
, Issue.3
, pp. 219-237
-
-
Deelman, E.1
-
11
-
-
59849095285
-
-
E. Deelman, D. Gannon, M. Shields, and I. Taylor. Workflows and e-Science: An overview of workflow system features and capabilities. Future Gen. Computer Systems, 25(5):528-540, 2009.
-
E. Deelman, D. Gannon, M. Shields, and I. Taylor. Workflows and e-Science: An overview of workflow system features and capabilities. Future Gen. Computer Systems, 25(5):528-540, 2009.
-
-
-
-
12
-
-
74049131377
-
-
J. Felsenstein. PHYLIP (phylogeny inference package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, 2004
-
J. Felsenstein. PHYLIP (phylogeny inference package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, 2004.
-
-
-
-
13
-
-
33750051947
-
Managing rapidly-evolving scientific workflows
-
Intl. Provenance and Annotation Workshop IPAW
-
J. Freire, C. Silva, S. Callahan, E. Santos, C. Scheidegger, and H. Vo. Managing rapidly-evolving scientific workflows. In Intl. Provenance and Annotation Workshop (IPAW), LNCS 4145, pages 10-18, 2006.
-
(2006)
LNCS
, vol.4145
, pp. 10-18
-
-
Freire, J.1
Silva, C.2
Callahan, S.3
Santos, E.4
Scheidegger, C.5
Vo, H.6
-
14
-
-
36348933309
-
Wings for Pegasus: Creating large-scale scientific applications using semantic representations of computational workflows
-
Y. Gil, V. Ratnakar, E. Deelman, G. Mehta, and J. Kim. Wings for Pegasus: Creating large-scale scientific applications using semantic representations of computational workflows. In National Conference on Artificial Intelligence, pages 1767-1774, 2007.
-
(2007)
National Conference on Artificial Intelligence
, pp. 1767-1774
-
-
Gil, Y.1
Ratnakar, V.2
Deelman, E.3
Mehta, G.4
Kim, J.5
-
15
-
-
33646676767
-
Petri net + nested relational calculus = dataflow
-
J. Hidders, N. Kwasnikowska, J. Sroka, J. Tyszkiewicz, and J. V. den Bussche. Petri net + nested relational calculus = dataflow. In OTM Conferences, pages 220-237, 2005.
-
(2005)
OTM Conferences
, pp. 220-237
-
-
Hidders, J.1
Kwasnikowska, N.2
Sroka, J.3
Tyszkiewicz, J.4
den Bussche, J.V.5
-
16
-
-
84858659440
-
Treating "shimantic web" syndrome with ontologies
-
D. Hull, R. Stevens, P. Lord, C. Wroe, and C. Goble. Treating "shimantic web" syndrome with ontologies. In Advanced Knowledge Technologies Workshop on Semantic Web Services, 2004.
-
(2004)
Advanced Knowledge Technologies Workshop on Semantic Web Services
-
-
Hull, D.1
Stevens, R.2
Lord, P.3
Wroe, C.4
Goble, C.5
-
17
-
-
0000087207
-
The semantics of a simple language for parallel programming
-
J. L. Rosenfeld, editor, North-Holland
-
G. Kahn. The semantics of a simple language for parallel programming. In J. L. Rosenfeld, editor, Proc. of the IFIP Congress 74, pages 471-475. North-Holland, 1974.
-
(1974)
Proc. of the IFIP Congress
, vol.74
, pp. 471-475
-
-
Kahn, G.1
-
18
-
-
54949120563
-
Viscomplete: Automating suggestions for visualization pipelines
-
D. Koop, C. Scheidegger, S. Callahan, J. Freire, and C. Silva. Viscomplete: Automating suggestions for visualization pipelines. IEEE Transactions on Visualization and Computer Graphics, 14(6):1691-1698, 2008.
-
(2008)
IEEE Transactions on Visualization and Computer Graphics
, vol.14
, Issue.6
, pp. 1691-1698
-
-
Koop, D.1
Scheidegger, C.2
Callahan, S.3
Freire, J.4
Silva, C.5
-
19
-
-
74049155851
-
A task abstraction and mapping approach to the shimming problem in scientific workflows
-
Bangalore, India
-
C. Lin, S. Lu, X. Fei, D. Pai, and J. Hua. A task abstraction and mapping approach to the shimming problem in scientific workflows. In IEEE Intl. Conf. on Services Computing, Bangalore, India, 2009.
-
(2009)
IEEE Intl. Conf. on Services Computing
-
-
Lin, C.1
Lu, S.2
Fei, X.3
Pai, D.4
Hua, J.5
-
20
-
-
31444438442
-
On providing declarative design and programming constructs for scientific workflows based on process networks
-
Technical Report SciDAC-SPA-TN-2003-01, SDSC
-
B. Ludäscher and I. Altintas. On providing declarative design and programming constructs for scientific workflows based on process networks. Technical Report SciDAC-SPA-TN-2003-01, SDSC, 2003.
-
(2003)
-
-
Ludäscher, B.1
Altintas, I.2
-
21
-
-
85015240841
-
Scientific process automation and workflow management
-
A. Shoshani and D. Rotem, editors, Scientific Data Management: Challenges, Existing Technology, and Deployment, chapter 13. Chapman & Hall/CRC
-
B. Ludäscher, I. Altintas, S. Bowers, J. Cummings, T. Critchlow, E. Deelman, D. D. Roure, J. Freire, C. Goble, M. Jones, S. Klasky, T. McPhillips, N. Podhorszki, C. Silva, I. Taylor, and M. Vouk. Scientific process automation and workflow management. In A. Shoshani and D. Rotem, editors, Scientific Data Management: Challenges, Existing Technology, and Deployment, Computational Science Series, chapter 13. Chapman & Hall/CRC, 2009.
-
(2009)
Computational Science Series
-
-
Ludäscher, B.1
Altintas, I.2
Bowers, S.3
Cummings, J.4
Critchlow, T.5
Deelman, E.6
Roure, D.D.7
Freire, J.8
Goble, C.9
Jones, M.10
Klasky, S.11
McPhillips, T.12
Podhorszki, N.13
Silva, C.14
Taylor, I.15
Vouk, M.16
-
23
-
-
31444448484
-
An Approach for Pipelining Nested Collections in Scientific Workflows
-
T. McPhillips and S. Bowers. An Approach for Pipelining Nested Collections in Scientific Workflows. SIGMOD Record, 34(3):12-17, 2005.
-
(2005)
SIGMOD Record
, vol.34
, Issue.3
, pp. 12-17
-
-
McPhillips, T.1
Bowers, S.2
-
25
-
-
59849087643
-
Scientific workflow design for mere mortals
-
T. McPhillips, S. Bowers, D. Zinn, and B. Ludäscher. Scientific workflow design for mere mortals. Future Generation Computer Systems, 25(5):541-551, 2009.
-
(2009)
Future Generation Computer Systems
, vol.25
, Issue.5
, pp. 541-551
-
-
McPhillips, T.1
Bowers, S.2
Zinn, D.3
Ludäscher, B.4
-
27
-
-
33646038227
-
Taverna: Lessons in creating a workflow environment for the life sciences
-
August
-
T. Oinn, M. Greenwood, M. Addis, M. N. Alpdemir, J. Ferris, K. Glover, C. Goble, A. Goderis, D. Hull, D. Marvin, P. Li, P. Lord, M. R. Pocock, M. Senger, R. Stevens, A. Wipat, and C. Wroe. Taverna: Lessons in creating a workflow environment for the life sciences. Concurrency and Computation: Practice & Experience, 18(10):1067-1100, August 2006.
-
(2006)
Concurrency and Computation: Practice & Experience
, vol.18
, Issue.10
, pp. 1067-1100
-
-
Oinn, T.1
Greenwood, M.2
Addis, M.3
Alpdemir, M.N.4
Ferris, J.5
Glover, K.6
Goble, C.7
Goderis, A.8
Hull, D.9
Marvin, D.10
Li, P.11
Lord, P.12
Pocock, M.R.13
Senger, M.14
Stevens, R.15
Wipat, A.16
Wroe, C.17
-
29
-
-
59949087987
-
The design and realisation of the myexperiment virtual research environment for social sharing of workflows
-
D. D. Roure, C. Goble, and R. Stevens. The design and realisation of the myexperiment virtual research environment for social sharing of workflows. Future Generation Computer Systems, 25:561-567, 2009.
-
(2009)
Future Generation Computer Systems
, vol.25
, pp. 561-567
-
-
Roure, D.D.1
Goble, C.2
Stevens, R.3
-
30
-
-
26844521242
-
RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs
-
A. Stamatakis, M. Ott, and T. Ludwig. RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs. Lecture Notes in Computer Science, 3606:288-302, 2005.
-
(2005)
Lecture Notes in Computer Science
, vol.3606
, pp. 288-302
-
-
Stamatakis, A.1
Ott, M.2
Ludwig, T.3
-
31
-
-
84868080139
-
DPGP cyberinfrastructure and open source toolkit for chip based resequencing
-
K. Stevens, D. Cutler, M. Zwick, P. de Jong, K. Huang, M. Koriabine, B. Ludäscher, C. Marston, S. Lee, D. Okou, K. Osoegawa, J. Warrington, D. Begun, and C. Langley. DPGP cyberinfrastructure and open source toolkit for chip based resequencing. In Advances in Genome Biology and Technology (AGBT), 2007.
-
(2007)
Advances in Genome Biology and Technology (AGBT)
-
-
Stevens, K.1
Cutler, D.2
Zwick, M.3
de Jong, P.4
Huang, K.5
Koriabine, M.6
Ludäscher, B.7
Marston, C.8
Lee, S.9
Okou, D.10
Osoegawa, K.11
Warrington, J.12
Begun, D.13
Langley, C.14
-
32
-
-
84868071238
-
-
Taverna. http://taverna.sourceforge.net.
-
Taverna
-
-
-
33
-
-
84892335166
-
-
I. J. Taylor, E. Deelman, D. B. Gannon, and M. Shields, editors, Springer
-
I. J. Taylor, E. Deelman, D. B. Gannon, and M. Shields, editors. Workflows for e-Science: Scientific Workflows for Grids. Springer, 2007.
-
(2007)
Workflows for e-Science: Scientific Workflows for Grids
-
-
-
34
-
-
84868075705
-
-
Triana project
-
Triana project. http://www.trianacode.org.
-
-
-
-
35
-
-
55349105426
-
On the relationship between workflow models and document types
-
March
-
K. van Hee, J. Hidders, G.-J. Houben, J. Paredaens, and P. Thiran. On the relationship between workflow models and document types. Information Systems, 34(1):178-208, March 2009.
-
(2009)
Information Systems
, vol.34
, Issue.1
, pp. 178-208
-
-
van Hee, K.1
Hidders, J.2
Houben, G.-J.3
Paredaens, J.4
Thiran, P.5
-
36
-
-
84868065558
-
Parallelizing XML processing pipelines via MapReduce
-
Special issue on Scientific Workflow. Accepted for publication
-
D. Zinn, S. Bowers, S. Köhler, and B. Ludäscher. Parallelizing XML processing pipelines via MapReduce. Journal of Computer and System Sciences, 2009. Special issue on Scientific Workflow. Accepted for publication.
-
(2009)
Journal of Computer and System Sciences
-
-
Zinn, D.1
Bowers, S.2
Köhler, S.3
Ludäscher, B.4
-
38
-
-
67649668619
-
-
D. Zinn, S. Bowers, T. M. McPhillips, and B. Ludäscher. X-CSR: Dataflow Optimization for Distributed XML Process Pipelines. In Intl. Conf. on Data Engineering (ICDE), pages 577-580, 2009. Also see Technical Report CSE-2008-15, UC Davis.
-
D. Zinn, S. Bowers, T. M. McPhillips, and B. Ludäscher. X-CSR: Dataflow Optimization for Distributed XML Process Pipelines. In Intl. Conf. on Data Engineering (ICDE), pages 577-580, 2009. Also see Technical Report CSE-2008-15, UC Davis.
-
-
-
|