Sequence analysis of a few species of termites (Order: Isoptera) on the basis of partial characterization of COII gene

Molecular and Cellular Biochemistry

Volumn 331, Issue 1-2, 2009, Pages 145-151

  Sobti, Ranbir Chander ^a   Kumari, Mamtesh ^a   Sharma, Vijay Lakshmi ^a   Sodhi, Monika ^b   Mukesh, Manishi ^b   Shouche, Yogesh ^c  

^a PANJAB UNIVERSITY   (India)

^b Natinal Bureau of Animal Genetic Resources   (India)

^c National Centre of Cell Sciences   (India)

Author keywords

Genetic variation; Partial sequence; Phylogenetic trees; Sequence divergence; Termites

Indexed keywords

GENOMIC DNA; MITOCHONDRIAL DNA; PRIMER DNA; CYTOCHROME C OXIDASE;

ARTICLE; BASE PAIRING; CLADISTICS; GENE AMPLIFICATION; GENE INSERTION; GENUS; ISOPTERA; MICROTERMES OBESI; MITOCHONDRIAL GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; ODONTOTERMES BHAGWATII; ODONTOTERMES HORNI; ODONTOTERMES OBESUS; PHYLOGENETIC TREE; SEQUENCE ANALYSIS; ANIMAL; CLASSIFICATION; DNA SEQUENCE; GENETICS; INDIA; PHYLOGENY; POLYMERASE CHAIN REACTION; SPECIES DIFFERENCE;

ISOPTERA; MACROTERMITINAE; MICROTERMES; MICROTERMES OBESI; ODONTOTERMES; ODONTOTERMES OBESUS; TERMITIDAE;

ANIMALS; BASE SEQUENCE; ELECTRON TRANSPORT COMPLEX IV; INDIA; ISOPTERA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 74049096849     PISSN: 03008177     EISSN: 15734919     Source Type: Journal    
DOI: 10.1007/s11010-009-0152-z     Document Type: Article

References (48)

1. Roderick GK (1996) Geographic structure of insect populations: gene flow, phylogeography, and their uses. Annu Rev Entomol 41:325-352
2. Caterino MS, Cho S, Sperling FAH (2000) The current state of insect molecular systematics: a thriving tower of Babel. Annu Rev Entomol 45:1-54
3. Xiang B, Kochar TD (1991) Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera). Genome 34:306-311
4. Fang Q, Black WCIV, Blocker HD, Whitcomb RF (1993) A phylogeny of New World Delta cephalus like leafhopper genera based on mitochondrial 16S ribosomal DNA sequences. Mol Phylogenet Evol 2:119-131
5. Kambhampati S (1995) A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes. Proc Natl Acad Sci USA 92:2017-2020
6. Tang J, Pruess K, Cupp EW, Unnasch TR (1996) Molecular phylogeny and typing of blackflies (Diptera: Simuliidae) that serve as vectors of human or bovine onchocerciasis. Med Vet Entomol 10:228-234
7. Mindell DP, Sorenson MD, Dimcheff DE, Hasegawa M, Ast JC, Yuri T (1999) Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes. Syst Biol 48:138-152
8. Waddell PJ, Cao Y, Hasegawa M, Mindell DP (1999) Assessing the cretaceous superordinal divergence times within birds and placental mammals using whole mitochondrial protein sequences and an extended statistical framework. Syst Biol 48:119-137
9. Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552
10. Hwang UW, Park CJ, Yong TS, Kim W (2001) One step PCR amplification of complete arthropod mitochondrial genomes. Mol Phylogenet Evol 19:345-352
11. Boore JL, Brown WM (1998) Gene translocation links insects and crustaceans. Nature 392:667-668
12. Curole JP, Kocher TD (1999) Mitogenomics: digging deeper with complete mitochondrial genomes. Trends Ecol Evol 14:394-398
13. Kambhampati S, Kjer KM, Thorne BL (1996) Phylogenetic relationship among termite families based on DNA sequence of mitochondrial 16S ribosomal RNA gene. Insect Mol Biol 5:229-238
14. Jenkins TM, Dean RE, Verkerk R, Forschler BT (2001) Phylogenetic analysis of two mitochondrial genes and one nuclear intron region illuminate European subterranean termite (Isoptera: Rhinotermitidae) gene flow, taxonomy and introduction dynamics. Mol Phylogenet Evol 20:286-293
15. Austin JW, Szalanski AL, Uva P, Bagnere's AG, Kence A (2002) A comparative genetic analysis of the subterranean termite genus Reticulitermes (Isoptera: Rhinotermitidae). Ann Entomol Soc Am 95:753-760
16. Crozier RH, Crozier YC, Mackinlay AG (1989) The COI and the COII region of honeybee mitochondrial DNA: evidence for variation in insect mitochondrial evolutionary rates. Mol Biol Evol 6:399-411
17. Liu H, Beckenbach AT (1992) Evolution of the mitochondrial cytochrome oxidase II gene among 10 orders of insects. Mol Phylogenet Evol 1:41-52
18. Jermiin LS, Crozier RH (1994) The cytochrome b region in the mitochondrial DNA of the ant Tetraponera rufoniger: sequence divergence in Hymenoptera may be associated with nucleotide content. J Mol Evol 38:282-294
19. Miura T, Maekawa K, Kitade O, Abe T (1998) Phylogenetic relationships among subfamilies in higher termites (Isoptera: Termitidae) based on mitochondrial COII gene sequences. Ann Entomol Soc Am 91:515-523
20. Jenkins TM, Basten CJ, Kresovich S, Forschler BT (1999) Mitochondrial gene sequence questions Reticulitermes species social structure (Isoptera: Rhinotermitidae). Sociobiology 34:161-172
21. Lo N, Tokuda G, Watanabe H, Rose H, Slaytor M, Maekawa K, Bandi C, Noda H (2000) Evidence from multiple gene sequences indicates that termites evolved from wood-feeding cockroaches. Curr Biol 10(13):801-804
22. Austin JW, Szalanski AL, Gold RE, Foster BT (2004) Genetic variation and geographical distribution of the subterranean termite genus Reticulitermes in Texas. Ann Entomol Soc Am 97:575-582
23. Sambrook J, Fritsh EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbour Laboratory Press, New York
24. Ballard JWO (1999) Mitochondrion mitochondrion Drosoph-ila mauritiana (fruitfly). Direct submission (NC-005779)
25. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
26. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W, improving the sensitivity of progressive multiples sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
27. Katoh H, Miura T, Maekawa K, Shinzato N, Matsumoto T (2002) Genetic variation of symbiotic fungi cultivated by the macroter-mitinae termite Odontotermes formosanus (Isoptera: Termitidae) in Ryukyu Archipelago. Mol Ecol 11:1565-1572
28. Yashiro T, Matsuura K (2007) Distribution and phylogenetic analysis of the termites egg mimicking fungi 'termite balls' in Reticulitermes termites. Ann Entomol Soc Am 100:532-538
29. Avise JC, Arnold J, Ball RM, Bermingham E, Lamb T, Neigel JE, Reeb CA, Saunders NC (1987) Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu Rev Ecol Syst 18:489-522
30. Avise JC (1998) The history and purview of phylogeography: concepts a personal reflection. Mol Ecol 7:371-379
31. Szalanski AL, Austin JW, Owens CB (2003) Identification of Reticulitermes spp. (Isoptera: Rhinotermitidae) by polymerase chain reaction-restriction fragment length polymorphism. J Econ Entomol 96(5):1514-1519
32. Austin JW, Szalanski AL, Scheffrahn RH, Messenger MT (2005) Genetic variation of Reticulitermes flavipes (Isoptera: Rhinoter-mitidae) in North America using the mitochondrial rRNA 16S gene. Ann Entomol Soc Am 98:980-988
33. Foster BT, Cognato AI, Gold RE (2004) DNA based identification of the eastern subterranean termite, Reticulitermes flavipes (Isoptera: Rhinotermitidae). J Econ Entomol 97:95-101
34. Kaib M, Franke S, Francke W, Brandl R (2002) Cuticular hydrocarbons in a termite: phenotypes and a neighbor-stranger effect. Physiol Entomol 27:189-198
35. Liang D, Silverman J (2000) 'You are what you eat': diet modifies cuticular hydrocarbons and nestmate recognition in the Argentine ant, Linepithema humile. Naturwissenschaften 87:412-416
36. Florane CB, Bland JM, Husseneder C, Raina AK (2004) Diet-mediated inter-colonial aggression in the formosan subterranean termite Coptotermes formosanus. J Chem Ecol 30(12):2559-2574
37. Olsen GJ, Woese CR (1993) Ribosomal RNA: a key to phylogeny. FASEB J 7:113-123
38. Miura T, Roisin Y, Matusmoto T (2000) Molecular phylogeny and biogeography of the nasute termite genus Nasutitermes (Isoptera: Termitidae) in the Pacific tropics. Mol Phylogenet Evol 17:1-10
39. Thompson GJ, Miller LR, Lenz M, Crozier RH (2000) Phylogenetic analysis and trait evolution in Australian lineages of drywood termites (Isoptera: Kalotermitidae). Mol Phylogenet Evol 17:419-429
40. Althoff DM, Thompson JN (2001) Geographic structure in the behavioural approaches. J Evol Biol 14:406-417
41. Hufbauer RA, Bogdanowicz SM, Perez L, Harrison RG (2001) Isolation and characterization of microsatellites in Aphidius ervi (Hymenoptera: Braconidae) and their applicability to related species. Mol Eco Notes 1:197-199
42. De La Rua P, Galian J, Serrano J, Moritz RFA (2001) Molecular characterization and population structure of the honeybees from the Balearic Islands (Spain). Apidologie 32:417-427 (Pubitemid 32973213)
43. Estoup A, Solignac M, Cornuet JM, Goudet J, Scholl A (1996) Genetic differentiation of continental and Island populations of Bombus terrestris (Hymenoptera: Apidae) in Europe. Mol Ecol 5:19-31
44. Widmer A, Schmid-Hempel P, Estoup A, Scholl A (1998) Population genetic structure and colonization history of Bom-bus terrestris (Hymenoptera: Apidae) from the Canary Islands and Madeira. Heredity 81:563-572
45. Althoff DM, Groman JD, Segraves KA, Pellmyr O (2001) Phy-logeographic structure in the bogus yucca moth Prodoxus quin-quepunctellus (Prodoxidae): comparisons with coexisting pollinator yucca moths. Mol Phylogenet Evol 21(1):117-127
46. Brown B, Emberson RM, Paterson AM (1999) Mitochondrial COI and COII provide useful markers for Wiseana (Lepidoptera: Hepialidae) species identification. Bull Entomol Res 89:287-293
47. Edward L, Vargo EL, Husseneder C (2009) Biology of subterranean termites: insights from molecular studies of Reticulitermes and Coptotermes. Annu Rev Entomol 54:379-403
48. Uva P, Clement J, Austin JW, Zaffagnini V, Quintana A, Bagneres AG (2003) Origin of a new Reticulitermes termite (Isoptera: Rhinotermitidae) inferred from mitochondrial DNA data. Mol Phylogenet Evol 30:344-353