An integrated cross-database search system for microRNA

Proceedings of the 2009 2nd International Conference on Biomedical Engineering and Informatics, BMEI 2009

Volumn , Issue , 2009, Pages

  Chen, Yijun ^a  

^a Suzhou Agriculture College   (China)

Author keywords

Bioinformatics; microRNA; miRNA; Query system; Web service

Indexed keywords

COMPREHENSIVE INFORMATION; DATABASE SEARCHES; HUMAN DISEASE; INFORMATION REDUNDANCIES; KEY SYSTEMS; MICRORNAS; MIRNA; NON-CODING RNAS; PROCESSING TECHNOLOGIES; QUERY SYSTEM; QUERY SYSTEMS; SPEED-UPS; USER FRIENDLY;

BIOLOGY; DATABASE SYSTEMS; INFORMATION RETRIEVAL; INFORMATION SYSTEMS; RNA; SEARCH ENGINES; WEB SERVICES;

BIOINFORMATICS;

EID: 74049088260     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BMEI.2009.5305536     Document Type: Conference Paper

References (17)

1. Lewis B P, Shih I H, Jones-Rhoades M W, et al, "Prediction of mammalian microRNA targets," Cell, 2003, No.115, pp. 787-798.
2. Lewis B P, Burge C B, Bartel D P, "Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets," Cell, 2005, No.120, pp.15-20.
3. Rusinov V, Baev V, Minkov I N, et al, "MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequence," Nucleic Acids Res, 2005, No.33, pp.696-700.
4. Krek A, Grun D, Poy M N, et al, "Combinatorial microRNA target predictions," Nat Genet, 2005, No.37, pp.495-500.
5. Saetrom O, Ola Snove J, Saetrom P, "Weighted sequence motifs as an improved seeding step in microRNA target prediction algorithms," RNA, 2005, No.11, pp.995-1003.
6. Saetrom P. "Predicting the efficacy of short oligonucleotides in antisense and RNAi experiments with boosted genetic programming," Bioinformatics, 2004, No.20, pp.3055-3063.
7. http://www.microrna.org/
8. http://pictar.mdc-berlin.de/
9. http://microrna.sanger.ac.uk/
10. http://en.wikipedia.org/
11. http://www.ncbi.org
12. http://www.ambion.com/
13. Kim S K, Nam J W, Rhee J K, et al, "MiTarget: microRNA target gene prediction using a support vector machine," BMC Bioinform, 2006, No.7, pp.411-420.
14. Enright A J, John B, Gaul U, et al, "MicroRNA targets in Drosophila," Genome Biol, 2003, No.5.
15. Smith T F, Waterman M S, "Identification of common molecular subsequences," J Mol Biol, 1981, No.147, pp.195-197.
16. Kiriakidou M, Nelson P T, Kouranov A, et al, "A combined computational-experimental approach predicts human microRNA targets," Genes Dev, 2004, No.18, pp.1165-1178.
17. Rehmsmeier M., Steffen P, Hochsmann M, et al, "Fast and effective prediction of microRNA/target duplexes," RNA, 2004, No.10, pp.1507-1517.