Molecular analysis of HLA Class i and Class II genes in four indigenous Malaysian populations

Tissue Antigens

Volumn 75, Issue 2, 2010, Pages 151-158

  Jinam, T A ^a   Saitou, N ^a   Edo, J ^b   Mahmood, A ^b   Phipps, M E ^c  

^a NATIONAL INSTITUTE OF GENETICS   (Japan)

^b UNIVERSITY OF MALAYA   (Malaysia)

^c MONASH UNIVERSITY MALAYSIA   (Malaysia)

Author keywords

Antigen haplotype; Borneo; Human leukocyte; Indigenous Malaysian; Orang Asli; Population genetics; Sequence based typing

Indexed keywords

HLA ANTIGEN CLASS 1; HLA ANTIGEN CLASS 2;

ALLELE; ARTICLE; GENE SEQUENCE; GENETIC ANALYSIS; HLA TYPING; HUMAN; HUMAN EXPERIMENT; IMMUNOGENETICS; INDIGENOUS PEOPLE; MAJOR CLINICAL STUDY; MALAYSIA; NORMAL HUMAN; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL;

ALLELES; ASIAN CONTINENTAL ANCESTRY GROUP; GENE FREQUENCY; GENES, MHC CLASS II; HISTOCOMPATIBILITY ANTIGENS CLASS I; HISTOCOMPATIBILITY ANTIGENS CLASS II; HLA ANTIGENS; HLA-A ANTIGENS; HLA-B ANTIGENS; HLA-DQ ANTIGENS; HLA-DR ANTIGENS; HUMANS; LEUKOCYTES; MALAYSIA; POPULATION GROUPS;

EID: 73949143533     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2009.01417.x     Document Type: Article

References (33)

1. Department of Statistics Malaysia. Yearbook of Statistics Malaysia. Kuala Lumpur : Department of Statistics Malaysia, 2005.
2. Gordon R. Ethologue: Languages of the Word, 15th edn. Dallas : SIL International, 2005.
3. Bellwood P. Prehistory of the Indo-Malaysian Archipelago. Hawaii : University of Hawaii Press, 1997.
4. Ballinger SW, Schurr TG, Torroni A et al. Southeast Asian mitochondrial DNA analysis reveals genetic continuity of ancient mongoloid migrations. Genetics 1992 : 130 : 139 152.
5. Hill C, Soares P, Mormina M et al. Phylogeography and ethnogenesis of aboriginal Southeast Asians. Mol Biol Evol 2006 : 23 : 2480 2491.
6. Bellwood P. The First Farmers: Origins of the Agricultural Societies. Carlton : Blackwell Publishing, 2005.
7. Melton T, Peterson R, Redd AJ et al. Polynesian genetic affinities with Southeast Asian populations as identified by mtDNA analysis. Am J Hum Genet 1995 : 57 : 403 414.
8. Redd AJ, Takezaki N, Sherry ST et al. Evolutionary history of the COII/tRNALys intergenic 9 base pair deletion in human mitochondrial DNAs from the Pacific. Mol Biol Evol 1995 : 12 : 604 615.
9. Gray RD, Jordan FM. Language trees support the express-train sequence of Austronesian expansion. Nature 2000 : 405 : 1052 1055.
10. Oppenheimer SJ, Richards M. Polynesian origins. Slow boat to Melanesia? Nature 2001 : 410 : 166 167.
11. Gray RD, Drummond AJ, Greenhill SJ. Language phylogenies reveal expansion pulses and pauses in Pacific settlement. Science 2009 : 323 : 479 483.
12. Robinson J, Waller MJ, Fail SC et al. The IMGT/HLA database. Nucleic Acids Res 2009 : 37 : D1013 7
13. Kong KF, Yeap SS, Chow SK, Phipps ME. HLA-DRB1 genes and susceptibility to rheumatoid arthritis in three ethnic groups from Malaysia. Autoimmunity 2002 : 35 : 235 239.
14. Azizah MR, Ainoi SS, Kuak SH, Kong NC, Normaznah Y, Rahim MN. The association of the HLA class II antigens with clinical and autoantibody expression in Malaysian Chinese patients with systemic lupus erythematosus. Asian Pac J Allergy Immunol 2001 : 19 : 93 100.
15. Koh CL, Benjamin DG. HLA-DQ alpha genotype and allele frequencies in Malays, Chinese, and Indians in the Malaysian population. Hum Hered 1994 : 44 : 150 155.
16. Edinur HA, Zafarina Z, Spínola H et al. HLA polymorphism in six Malay subethnic groups in Malaysia. Hum Immunol 2009 : 70 : 518 526.
17. Miller SA, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 1988 : 16 : 1215.
18. Guo SW, Thompson EA. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 1992 : 48 : 361 372.
19. Lancaster AK, Single RM, Solberg OD, Nelson MP, Thomson G. PyPop update -a software pipeline for large-scale multilocus population genomics. Tissue Antigens 2007 : 69 (Suppl 1 192 197.
20. Wheeler DL, Barrett T, Benson DA et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2007 : 35 : D5 12.
21. Saito S, Ota S, Yamada E et al. Allele frequencies and haplotypic associations defined by allelic DNA typing at HLA class I and class II loci in the Japanese population. Tissue Antigens 2000 : 56 : 522 529.
22. Lee KW, Oh DH, Lee C et al. Allelic and haplotypic diversity of HLA-A, -B, -C, -DRB1, and -DQB1 genes in the Korean population. Tissue Antigens 2005 : 65 : 437 447.
23. Yuliwulandari R, Kashiwase K, Nakajima H et al. Polymorphisms of HLA genes in Western Javanese (Indonesia): close affinities to Southeast Asian populations. Tissue Antigens 2008 : 73 : 46 53.
24. Chu CC, Lin M, Nakajima F et al. Diversity of HLA among Taiwan's indigenous tribes and the Ivatans in the Philippines. Tissue Antigens 2001 : 58 : 9 18.
25. Phipps M, Jinam T. A new HLA-B*35 allele, B*3589, detected in a Malaysian individual. Tissue Antigens 2009 : 73 : 279 280.
26. Mack SJ, Bugawan TL, Moonsamy PV et al. Evolution of Pacific/Asian populations inferred from HLA class II allele frequency distributions. Tissue Antigens 2000 : 55 : 383 400.
27. Hirayama K, Zaidi AS, Lokman Hakim S et al. Molecular analysis of HLA-B in the Malaysian aborigines. Tissue Antigens 1996 : 48 : 692 697.
28. Hill AV, Allsopp CE, Kwiatkowski D et al. Common west African HLA antigens are associated with protection from severe malaria. Nature 1991 : 352 : 595 600.
29. Busson M, Vu Trieu A, Labelle P et al. HLA-DRB1 and DQB1 allele distribution in the Muong population exposed to malaria in Vietnam. Tissue Antigens 2002 : 59 : 470 474.
30. Ghosh K. Evolution and selection of human leukocyte antigen alleles by Plasmodium falciparum infection. Hum Immunol 2008 : 69 : 856 860.
31. Solberg OD, Mack SJ, Lancaster AK et al. Balancing selection and heterogeneity across the classical human leukocyte antigen loci: a meta-analytic review of 497 population studies. Hum Immunol 2008 : 69 : 443 464.
32. Sanchez-Mazas A. An apportionment of human HLA diversity. Tissue Antigens 2007 : 69 (Suppl 1 198 202.
33. Meyer D, Single RM, Mack SJ, Erlich HA, Thomson G. Signatures of demographic history and natural selection in the human major histocompatibility complex Loci. Genetics 2006 : 173 : 2121 2142.