Cyclic stretch magnitude and duration affect rat alveolar epithelial gene expression

Cellular Physiology and Biochemistry

Volumn 25, Issue 1, 2010, Pages 113-122

  Yerrapureddy, Adi ^a   Tobias, John ^b   Margulies, Susan ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

Cell injury; Microarray; Ventilator associated lung injury

Indexed keywords

AMPHIREGULIN; GLUTAMATE CYSTEINE LIGASE; MATRILYSIN; PHOSPHOPROTEIN PHOSPHATASE 1;

ANIMAL CELL; ARTICLE; ARTIFICIAL VENTILATION; CONTROLLED STUDY; GENE EXPRESSION; LUNG ALVEOLUS EPITHELIUM; LUNG INJURY; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; RAT; VENTILATOR ASSOCIATED PNEUMONIA;

RATTUS;

EID: 73849087980     PISSN: 10158987     EISSN: None     Source Type: Journal    
DOI: 10.1159/000272056     Document Type: Article

References (38)

1. Rubenfeld GD, Caldwell E, Peabody E, Weaver J, Martin DP, Neff M, Stern EJ, Hudson LD: Incidence and outcomes of acute lung injury. N Engl J Med 2005;353:1685-1693.
2. Ma SF, Grigoryev DN, Taylor AD, Nonas S, Sammani S, Ye SQ, Garcia JG: Bioinformatic identification of novel early stress response genes in rodent models of lung injury. Am J Physiol Lung Cell Mol Physiol 2005;289:L468-477.
3. Wurfel MM: Microarray-based analysis of ventilator-induced lung injury. Proc Am Thorac Soc 2007;4:77-84.
4. Nonas SA, Monero-Vinasco L, Ma SF, Jacobson JR, Desai AA, Dudek SM, Flores C, Hassoun PM, Sam L, Ye SQ, Moitra J, Barnard J, Grigoryev DN, Lussier YA, Garcia JG: Use of consomic rats for genomic insights into ventilator-associated lung injury. Am J Physiol Lung Cell Mol Physiol 2007;293:L292-302.
5. dos Santos CC, Okutani D, Hu P, Crimi E, He X, Keshavjee S, Greenwood C, Slutsky AS, Zhang H, Liu M: Differential gene profiling in acute lung injury identifies injury-specific gene expression. Crit Care Med 2008;36:855-865.
6. Desai AA, Hysi P, Garcia JG: Integrating genomic and clinical medicine: searching for susceptibility genes in complex lung diseases. Transl Res 2008;151:181-193.
7. Grigoryev DN, Finigan JH, Hassoun P, Garcia JG: Science review: searching for gene candidates in acute lung injury. Crit Care 2004;8:440-447.
8. Grigoryev DN, Ma SF, Irizarry RA, Ye SQ, Quackenbusch J, Garcia JG: Orthologous gene-expression profiling in multi-species models: search for candidate genes. Genome Biol 2004;5:R34.
9. Copland IB, Kavanagh BP, Engelberts D, McKerlie C, Belik J, Post M: Early changes in lung gene expression due to high tidal volume. Am J Respir Crit Care Med 2003;168:1051-1059.
10. Dolinay T, Wu W, Kaminski N, Ifedigbo E, Kaynar AM, Szilasi M, Watkins SC, Ryter SW, Hoetzel A, Choi AM: Mitogen-activated protein kinases regulate susceptibility to ventilator-induced lung injury. PLoS One 2008;3:e1601.
11. Simon BA, Easley RB, Grigoryev DN, Ma SF, Ye SQ, Lavoie T, Tuder RM, Garcia JG: Microarray analysis of regional cellular responses to local mechanical stress in acute lung injury. Am J Physiol Lung Cell Mol Physiol 2006;291:L851-861.
12. Dolinay T, Kaminski N, Felgendreher M, Kim HP, Reynolds P, Watkins SC, Karp D, Uhlig S, Choi AM: Gene expression profiling of target genes in ventilator-induced lung injury. Physiol Genomics 2006;26:68-75.
13. Dhanireddy S, Altemeier WA, Matute-Bello G, O'Mahony DS, Glenny RW, Martin TR, Liles WC: Mechanical ventilation induces inflammation, lung injury, and extra-pulmonary organ dysfunction in experimental pneumonia. Lab Invest 2006;86:790-799.
14. Papaiahgari S, Yerrapureddy A, Reddy SR, Reddy NM, Dodd-O JM, Crow MT, Grigoryev DN, Barnes K, Tuder RM, Yamamoto M, Kensler TW, Biswal S, Mitzner W, Hassoun PM, Reddy SP: Genetic and pharmacologic evidence links oxidative stress to ventilator-induced lung injury in mice. Am J Respir Crit Care Med 2007;176:1222-1235.
15. dos Santos CC, Han B, Andrade CF, Bai X, Uhlig S, Hubmayr R, Tsang M, Lodyga M, Keshavjee S, Slutsky AS, Liu M: DNA microarray analysis of gene expression in alveolar epithelial cells in response to TNFalpha, LPS, and cyclic stretch. Physiol Genomics 2004;19:331-342.
16. Ning QM, Wang XR: Response of alveolar type II epithelial cells to mechanical stretch and lipopolysaccharide. Respiration 2007;74:579-585.
17. Tschumperlin DJ, Margulies SS: Equibiaxial deformation-induced injury of alveolar epithelial cells in vitro. Am J Physiol 1998;275:L1173-1183.
18. Tschumperlin DJ, Oswari J, Margulies AS: Deformation-induced injury of alveolar epithelial cells. Effect of frequency, duration, and amplitude. Am J Respir Crit Care Med 2000;162:357-362.
19. McAdams RM, Mustafa SB, Shenberger JS, Dixon PS, Henson BM, DiGeronimo RJ: Cyclic stretch attenuates effects of hyperoxia on cell proliferation and viability in human alveolar epithelial cells. Am J Physiol Lung Cell Mol Physiol 2006;291:L166-174.
20. Vlahakis NE, Schroeder MA, Limper AH, Hubmayr RD: Stretch induces cytokine release by alveolar epithelial cells in vitro. Am J Physiol 1999;277:L167-173.
21. Dreyfuss D, Saumon G: Ventilator-induced lung injury: lessons from experimental studies. Am J Respir Crit Care Med 1998;157:294-323. (Pubitemid 28071297)
22. Cavanaugh KJ, Cohen TS, Margulies SS: Stretch increases alveolar epithelial permeability to uncharged micromolecules. Am J Physiol Cell Physiol 2006;290:C1179-1188.
23. Cavanaugh KJ Jr, Margulies SS: Measurement of stretch-induced loss of alveolar epithelial barrier integrity with a novel in vitro method. Am J Physiol Cell Physiol 2002;283:C1801-1808.
24. Cohen TS, Cavanaugh KJ, Margulies SS: Frequency and peak stretch magnitude affect alveolar epithelial permeability. Eur Respir J 2008;32:854-861.
25. Van Driessche W, Kreindler JL, Malik AB, Margulies S, Lewis SA, Kim KJ: Interrelations/cross talk between transcellular transport function and paracellular tight junctional properties in lung epithelial and endothelial barriers. Am J Physiol Lung Cell Mol Physiol 2007;293:L520-524.
26. Stone KC, Mercer RR, Gehr P, Stockstill B, Crapo JD: Allometric relationships of cell numbers and size in the mammalian lung. Am J Respir Cell Mol Biol 1992;6:235-243.
27. Dobbs LG, Gonzalez R, Williams MC: An improved method for isolating type II cells in high yield and purity. Am Rev Respir Dis 1986;134:141-145.
28. Oswari J, Matthay MA, Margulies SS: Keratinocyte growth factor reduces alveolar epithelial susceptibility to in vitro mechanical deformation. Am J Physiol Lung Cell Mol Physiol 2001;281:L1068-1077.
29. Levine GK, Deutschmann CS, Helfaer MA, Margulies SS: Sepsis-induced lung injury in rats increases alveolar epithelial vulnerability to stretch. Crit Care Med 2006;34:1746-1751.
30. Pawitan Y, Michiels S, Koscielny S, Gusnanto A, Ploner A: False discovery rate, sensitivity and sample size for microarray studies. Bioinformatics 2005;21:3017-3024. (Pubitemid 40916427)
31. Huang da W, Sherman BT, Lempicki RA: Systematic and integrative analysis of large gene lists using DAVID bio-informatics resources. Nat Protoc 2009;4:44-57.
32. Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA: DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 2003;4:P3.
33. Becker K G, Hosack DA, Dennis G Jr, Kempicki RA, Bright TJ, Cheadle C, Engel J: PubMatrix: a tool for multiplex literature mining. BMC Bioinformatics 2003;4:61.
34. Zeng ZS, Shu WP, Cohen AM, Guillem JG: Matrix metalloproteinase-7 expression in colorectal cancer liver metastases: evidence for involvement of MMP-7 activation in human cancer metastases. Clin Cancer Res 2002;8:144-148.
35. Lee SJ, Lim CJ, Min JK, Lee JK, Kim YM, Lee JY, Won MH, Kwon YG: Protein phosphatase 1 nuclear targeting subunit is a hypoxia inducible gene: its role in post-translational modification of p53 and MDM2. Cell Death Differ 2007;14:1106-1116.
36. Swee M, Wilson CL, Wang Y, McGuire JK, Parks WC: Matrix metallo-proteinase-7 (matrilysin) controls neutrophil egress by generating chemokine gradients. J Leukoc Biol 2008;83:1404-1412.
37. Altemeier WA, Matute-Bello G, Frevert CW, Kawata Y, Kajikawa O, Martin TR, Glenny RW: Mechanical ventilation with moderate tidal volumes synergistically increases lung cytokine response to systemic endotoxin. Am J Physiol Lung Cell Mol Physiol 2004;287:L533-542.
38. Li LF, Huang CC, Lin HC, Tsai YH, Quinn DA, Liao SK: Unfractionated heparin and enoxaparin reduce high-stretch ventilation augmented lung injury: a prospective, controlled animal experiment. Crit Care 2009;13:R108.