Analytical formulas for low-fluence non-line-narrowed hole-burned spectra in an excitonically coupled dimer

Journal of Chemical Physics

Volumn 131, Issue 23, 2009, Pages

  Reppert, Mike ^a   Naibo, Virginia ^a   Jankowiak, Ryszard ^a  

^a KANSAS STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL FORMULAS; ANTENNA COMPLEXES; ARBITRARY COUPLINGS; CIRCULAR DICHROISM SPECTRA; COUPLED DIMERS; COUPLED SYSTEMS; EXCITONIC STATE; EXCITONIC TRANSITION; FLUENCES; HOLE BURNING; MONTE CARLO SIMULATION; OPTICAL SPECTRA; OSCILLATOR STRENGTHS; PHOTOSYNTHETIC SYSTEMS; PHOTOSYSTEM II;

COMPUTER SIMULATION; DICHROISM; ELECTRONIC STRUCTURE; MONTE CARLO METHODS; OLIGOMERS;

SEMICONDUCTOR QUANTUM DOTS;

EID: 73449100828     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3270394     Document Type: Article

References (59)

1. W. E. Moerner Ed, Topics in Current Physics, Persistent Spectral Hole Burning: Science and Applications (Springer, New York, 1987).
2. R. Jankowiak, J. M. Hayes, and G. J. Small, Chem. Rev. (Washington, D.C.) 0009-2665 93, 1471 (1993).
3. J. L. Hughes and E. Krausz, in Applications of Physical Methods to Inorganic and Bioinorganic Chemistry, edited by, R. A. Scott, and, Ch. M. Lukehart, (Wiley, New York, 2007)
4. A. Sigl, M. Orrit, T. Reinot, R. Jankowiak, and J. Friedrich, J. Chem. Phys. 0021-9606 127, 084510 (2007). 10.1063/1.2768960 (Pubitemid 47352541)
5. R. Purchase and S. Völker, Photosynth. Res. 0166-8595 101, 245 (2009). 10.1007/s11120-009-9484-5
6. R. Jankowiak, in Shpol'skii Spectroscopy and other Site Selection Methods, edited by, C. Gooijer, F. Ariese, and, J. W. Hofstraat, (Wiley, New York, 2000), Chap., pp. 235-271.
7. E. Krausz, J. L. Hughes, P. J. Smith, R. J. Pace, and S. P. Aarskoeld, Photosynth. Res. 0166-8595 84, 193 (2005). 10.1007/s11120-004-7078-9 (Pubitemid 41110647)
8. M. Rätsep, J. Pieper, K. Irrgang, and A. Freiberg, J. Phys. Chem. B 1089-5647 112, 110 (2008). 10.1021/jp075170d (Pubitemid 351169888)
9. S. R. Meech, A. J. Hoff, and D. A. Wiersma, Springer Ser. Chem. Phys. 0172-6218 46, 384 (1986).
10. K. J. Vink, S. De Boer, J. J. Plijter, A. J. Hoff, and D. A. Wiersma, Chem. Phys. Lett. 0009-2614 142, 433 (1987). 10.1016/0009-2614(87)80639-5
11. A. Freiberg, J. A. Jackson, S. Lin, and N. W. Woodbury, J. Phys. Chem. A 1089-5639 102, 4372 (1998). 10.1021/jp980028l
12. M. L. Groot, J. Breton, L. J. G. W. Van Wilderen, J. P. Dekker, and R. Van Grondelle, J. Phys. Chem. B 1089-5647 108, 8001 (2004). 10.1021/jp037966s
13. D. Zigmantas, E. L. Read, T. Mancal, T. Brixner, A. T. Gardiner, R. J. Cogdell, and G. R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 103, 12672 (2006). 10.1073/pnas.0602961103 (Pubitemid 44298619)
14. R. Jankowiak and G. J. Small, in Photosynthetic Reaction Centers, edited by, J. Norris, and, J. Deisenhofer, (Academic, New York, 1993), p. 133.
15. N. C. Dang, V. Zazubovich, M. Reppert, B. Neupane, R. Picorel, M. Seibert, and R. Jankowiak, J. Phys. Chem. B 1089-5647 112, 9921 (2008). 10.1021/jp801373c
16. M. Reppert, V. Zazubovich, N. C. Dang, M. Seibert, and R. Jankowiak, J. Phys. Chem. B 1089-5647 112, 9934 (2008). 10.1021/jp8013749
17. J. L. Hughes, R. Picorel, M. Seibert, and E. Krausz, Biochemistry 0006-2960 45, 12345 (2006). 10.1021/bi0614683 (Pubitemid 44527557)
18. J. L. Hughes, P. J. Smith, R. J. Pace, and E. Krausz, J. Lumin. 0022-2313 119-120, 298 (2006). 10.1016/j.jlumin.2006.01.012
19. J. L. Hughes, R. Razeghifard, M. Logue, A. Oakley, T. Wydrzynski, and E. Krausz, J. Am. Chem. Soc. 0002-7863 128, 3649 (2006). 10.1021/ja056576b
20. V. Zazubovich and R. Jankowiak, J. Lumin. 0022-2313 127, 245 (2007). 10.1016/j.jlumin.2007.02.031 (Pubitemid 46754052)
21. M. Rätsep and A. Freiberg, J. Lumin. 0022-2313 127, 251 (2007). 10.1016/j.jlumin.2007.02.053 (Pubitemid 46754053)
22. C. De Caro, R. W. Visschers, R. van Grondelle, and S. Völker, J. Lumin. 0022-2313 58, 149 (1994). 10.1016/0022-2313(94)90383-2
23. B. Neupane, N. C. Dang, K. Acharya, M. Reppert, V. Zazubovich, R. Picorel, M. Seibert, and R. Jankowiak, " New insight into the electronic structure of CP47 antenna protein complex at Photosystem II: Hole-burning and fluorescence study.," J. Am. Chem. Soc. (submitted).
24. R. Hirschmann and J. Friedrich, J. Opt. Soc. Am. B 0740-3224 9, 811 (1992). 10.1364/JOSAB.9.000811
25. R. Hirschmann, W. Köhler, J. Friedrich, and E. Daltrozzo, Chem. Phys. Lett. 0009-2614 151, 60 (1988). 10.1016/0009-2614(88)80069-1
26. M. Lindrum and S. Daehne, Phys. Status Solidi B 0370-1972 189, 51 (1995). 10.1002/pssb.2221890106
27. S. de Boer, K. J. Vink, and D. A. Wiersma, Chem. Phys. Lett. 0009-2614 137, 99 (1987). 10.1016/0009-2614(87)80312-3
28. Y. Berlin, A. Burin, J. Friedrich, and J. Köhler, Phys. Life Rev. 4, 64 (2007). 10.1016/j.plrev.2007.01.001 1571-0645
29. T. Reinot, V. Zazubovich, J. M. Hayes, and G. J. Small, J. Phys. Chem. B 1089-5647 105, 5083 (2001). 10.1021/jp010126y (Pubitemid 35372606)
30. M. Reppert, K. Acharya, B. Neupane, and R. Jankowiak, J. Am. Chem. Soc. (2009) (submitted).
31. M. Reppert, V. Naibo, and R. Jankowiak, " Modeling study of non-line narrowed hole-burned spectra in weakly coupled dimers and multichromophoric molecular assemblies.," Chem. Phys. 0301-0104 (in press), doi:10.1016/j.chemphys.2009.10.013.
32. Y. Won, R. A. Friesner, M. R. Johnson, and J. L. Sessler, Photosynth. Res. 0166-8595 22, 201 (1989). 10.1007/BF00048299
33. O. Kühn, T. Renger, and V. May, Chem. Phys. 0301-0104 204, 99 (1996). 10.1016/0301-0104(95)00448-3
34. T. Renger and V. May, Phys. Rev. Lett. 0031-9007 78, 3406 (1997). 10.1103/PhysRevLett.78.3406
35. P. Kjellberg, B. Bruggemann, and T. Pullerits, Phys. Rev. B 0163-1829 74, 024303 (2006). 10.1103/PhysRevB.74.024303 (Pubitemid 44128400)
36. T. Cusati, A. Napoli, and A. Messina, THEOCHEM 0166-1280 769, 3 (2006). 10.1016/j.theochem.2006.04.052
37. Y. Okuno and S. Mashiko, Jpn. J. Appl. Phys., Part 1 0021-4922 45, 475 (2006). 10.1143/JJAP.45.475 (Pubitemid 43185053)
38. A. Kimura and T. Kakitani, J. Phys. Chem. A 1089-5639 111, 12042 (2007). 10.1021/jp0734629 (Pubitemid 350241461)
39. M. E. Madjet, F. Muh, and T. Renger, J. Phys. Chem. B 1089-5647 113, 12603 (2009). 10.1021/jp906009j
40. M. R. Wasielewski, D. G. Johnson, M. P. Niemczyk, G. L. Gaines III, M. P. O'Neil, and W. A. Svec, J. Am. Chem. Soc. 0002-7863 112, 6482 (1990). 10.1021/ja00174a005
41. F. Ito, Y. Ishibashi, S. R. Khan, H. Miyasaka, K. Kameyama, M. Morisue, A. Satake, K. Ogawa, and Y. Kobuke, J. Phys. Chem. A 1089-5639 110, 12734 (2006). 10.1021/jp062822+ (Pubitemid 46065649)
42. D. Bellows, S. M. Aly, C. P. Gros, M. El Ojaimi, J. Barbe, R. Guilard, and P. D. Harvey, Inorg. Chem. 0020-1669 48, 7613 (2009). 10.1021/ic900840w
43. A. De Wilton, L. V. Haley, and J. A. Koningstein, Chem. Phys. Lett. 0009-2614 97, 538 (1983). 10.1016/0009-2614(83)80467-9
44. A. P. Losev, R. V. Yaaniso, and I. N. Nichiporovich, Zh. Prikl. Spektrosk. 0514-7506 57, 46 (1992).
45. T. P. Carter and G. J. Small, J. Phys. Chem. 0022-3654 90, 1997 (1986). 10.1021/j100401a006
46. K. Mauring, A. Suisalu, J. Kikas, E. I. Zenkevich, A. V. Chernook, A. M. Shulga, and G. P. Gurinovich, J. Lumin. 0022-2313 64, 141 (1995). 10.1016/0022-2313(95)00023-J
47. Y. Won and R. A. Friesner, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 84, 5511 (1987). 10.1073/pnas.84.16.5511
48. T. Renger, I. Trostmann, C. Theiss, M. E. Madjet, M. Richter, H. Paulsen, H. J. Eichler, A. Knorr, and G. Renger, J. Phys. Chem. B 1089-5647 111, 10487 (2007). 10.1021/jp0717241 (Pubitemid 47441854)
49. C. Theiss, I. Trostmann, S. Andree, F. J. Schmitt, T. Renger, H. J. Eichler, H. Paulsen, and G. Renger, J. Phys. Chem. B 1089-5647 111, 13325 (2007). 10.1021/jp0723968 (Pubitemid 350254040)
50. F. -J. Schmitt, I. Trostmann, C. Theiss, J. Pieper, T. Renger, J. Fuesers, E. H. Hubrich, H. Paulsen, H. J. Eichler, and G. Renger, J. Phys. Chem. B 1089-5647 112, 13951 (2008). 10.1021/jp8024057
51. A. Kimura, T. Kakitani, and T. Yamato, J. Phys. Chem. B 1089-5647 104, 9276 (2000). 10.1021/jp000589o (Pubitemid 30955211)
52. J. Frenkel, Phys. Z. Sowjetunion 0369-9811 9, 158 (1936).
53. T. Förster, Ann. Phys. 0003-3804 437, 55 (1948). 10.1002/andp.19484370105
54. H. Van Amerongen, L. Valkunas, and R. Van Grondelle, Photosynthetic Excitons (World Scientific, Singapore, 2000).
55. 1 (δ) =F (δ) for symmetric site energy SDFs, and the parameters for Monte Carlo simulations of the CP47 complex of Photosystem II.
56. T. Renger and R. A. Marcus, J. Chem. Phys. 0021-9606 116, 9997 (2002). 10.1063/1.1470200 (Pubitemid 34690651)
57. A. Guskov, J. Kern, A. Gabdulkhakov, M. Broser, A. Zouni, and W. Saenger, Nat. Struct. Mol. Biol. 1545-9993 16, 334 (2009). 10.1038/nsmb.1559
58. T. Reinot, N. C. Dang, and G. J. Small, J. Chem. Phys. 0021-9606 119, 10404 (2003). 10.1063/1.1605371
59. B. Loll, J. Kern, W. Saenger, A. Zouni, and J. Biesiadka, Nature (London) 0028-0836 438, 1040 (2005). 10.1038/nature04224 (Pubitemid 43093979)