Detection and quantification of the nematophagous fungus Hirsutella minnesotensis in soil with real-time PCR

Applied Soil Ecology

Volumn 44, Issue 2, 2010, Pages 170-175

  Xiang, M C ^a   Xiang, P A ^b   Jiang, X Z ^a   Duan, W J ^a   Liu, X Z ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b HUNAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Biological control; Fungal biomass; Nematophagous fungus; Quantitative PCR

Indexed keywords

FUNGI; GLYCINE MAX; HETERODERA GLYCINES; HIRSUTELLA; HIRSUTELLA MINNESOTENSIS;

EID: 73349125416     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2009.12.002     Document Type: Article

References (40)

1. Atkins S.D., Clark I.M., Pande S., Hirsch P.R., and Kerry B.R. The use of real-time PCR and species-specific primers for the identification and monitoring of Paecilomyces lilacinus. FEMS Microbiol. Ecol. 51 (2005) 257-264
2. Atkins S.D., Clark I.M., Sosnowska D., Hirsch P.R., and Kerry B.R. Detection and quantification of Plectosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media and baiting. Appl. Environ. Microbiol. 69 (2003) 4788-4793
3. Brierley J.L., Stewart J.A., and Lees A.K. Quantifying potato pathogen DNA in soil. Appl. Soil Ecol. 41 (2009) 234-238
4. Chen S.Y., and Liu X.Z. Control of the soybean cyst nematode by the fungi Hirsutella rhossiliensis and Hirsutella minnesotensis in greenhouse studies. Biol. Control 32 (2005) 208-219
5. Chen S.Y. Suppression of Heterodera glycines in soils from fields with long-term soybean monoculture. Biocontrol Sci. Technol. 17 (2007) 125-134
6. Chen S.Y., Liu X.Z., and Chen F.J. Hirsutella minnesotensis sp nov-a new parasite of the soybean cyst nematode. Mycologia 92 (2000) 819-824
7. Clyde W. Clinical overview of typical Mycoplasma pneumoniae infections. Clin. Infect. Dis. 17 Suppl. 1 (1993) S32-S36
8. Crump D.H., and Kerry B.R. A quantitative method for extracting resting spores of two nematode parasitic fungi, Nematophthora gynophila and Verticillium chlamydosporium, from soil. Nematologica 27 (1981) 330-339
9. Eayre C.G., Jaffee B.A., and Zehr E.I. Suppression of Criconemella xenoplax by the nematophagous fungus Hirsutella rhossiliensis. Plant Dis. 71 (1987) 832-834
10. Eren J., and Pramer D. The most probable number of nematode-trapping fungi in soil. Soil Sci. 99 (1965) 285
11. Jaffee B.A. Population biology and biological control of nematodes. Can. J. Microbiol. 38 (1992) 359-364
12. Jaffee B.A., Gaspard J.T., Ferris H., and Muldoon A.E. Quantification of parasitism of the soil-borne nematode Criconemella xenoplax by the nematophagous fungus Hirsutella rhossiliensis. Soil Biol. Biochem. 20 (1988) 631-636
13. Kerry B.R., and Bourne J.M. The importance of rhizosphere interactions in the biological control of plant parasitic nematodes-a case study using Verticillium chlamydosporium. Pestic. Sci. 47 (1996) 69-75
14. Kerry B.R., Kirkwood I.A., de Leij F.A.A., Barba J., Leijdens M.B., and Brookes P.C. Growth and survival of Verticillium chlamydosporium Goddard, a parasite of nematodes, in soil. Biocontrol Sci. Technol. 3 (1993) 355-365
15. Lees A.K., Cullen D.W., Sullivan L., and Nicolson M.J. Development of conventional and quantitative real-time PCR assays for the detection and identification of Rhizoctonia solani AG-3 in potato and soil. Plant Pathol. 51 (2002) 293-302
16. Liu S.F., and Chen S.Y. Efficacy of the fungi Hirsutella minnesotensis and Hirsutella rhossiliensis from liquid culture for control of the soybean cyst nematode. Nematology 7 (2005) 149-157
17. Liu S.F., and Chen S.Y. Nematode hosts of the fungus Hirsutella minnesotensis (Abstr). Phytopathology 91 (2001) S138
18. Liu X.Z., and Chen S.Y. Parasitism of Heterodera glycines by Hirsutella spp in Minnesota soybean fields. Biol. Control 19 (2000) 161-166
19. Liu X.Z., and Chen S.Y. Screening isolates of Hirsutella species for biocontrol of Heterodera glycines. Biocontrol Sci. Technol. 11 (2001) 151-160
20. Liu X.Z., and Wu X.Y. Decline of soybean cyst nematode: a preliminary result. Proc. 2nd Intl. Workshop on Plant Nematol. Univ. of Karachi, Pakistan (1992) 61-69
21. Liu X.Z., Li J.Q., and Zhang D.S. History and status of soybean cyst nematode in China. Intl. J. Nematol. 7 (1997) 18-25
22. Ma R., Liu X.Z., Jian H., and Li S.D. Detection of Hirsutella spp and Pasteuria sp parasitizing second-stage juveniles of Heterodera glycines in soybean fields in China. Biol. Control 33 (2005) 223-229
23. Mauchline T.H., Kerry B.R., and Hirsch P.R. Quantification in soil and the rhizosphere of the nematophagous fungus Verticillium chlamydosporium by competitive PCR and comparison with selective plating. Appl. Environ. Microbiol. 68 (2002) 1846-1853
24. Mennan S., Chen S.Y., and Melakeberhan H. Suppression of Meloidogyne hapla populations by Hirsutella minnesotensis. Biocontrol Sci. Technol. 16 (2006) 181-193
25. Muller J. The influence of fungal parasites on the population dynamics of Heterodera schachtii. Nematologica 28 (1982) 161
26. Nishizawa T. Nematode survey on upland fields in Java Island, with special reference to soybean fields. Report on Japan-Indonesian Joint Agric Res Project JR 84-74. Japan Intl. Cooperation Agency (1984) 165-185
27. Ophel-Keller K., McKay A., Hartley D., Herdina, and Curran J. Development of a routine DNA-based testing service for soilborne diseases in Australia. Aust. Plant Pathol. 37 (2008) 243-253
28. Riggs R.D., and Wrather J.A. Biology and Management of the Soybean Cyst Nematode (1992), APS Press, USA
29. Stirling G.R., and Mankau R. Parasitism of Meloidogyne eggs by a new fungal parasite. J. Nematol. 10 (1978) 236-240
30. Sturhan D., and Schneider R. Hirsutella heteroderae, a new nematode-parasitic fungus. Phytopathology 99 (1980) 105-115
31. Sun M.H., and Liu X.Z. Suppressive soils of soybean cyst nematode in China. Acta Phytopathol. Sinica 30 4 (2000) 353-356
32. Tebbe C.C., and Vahjen W. Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast. Appl. Environ. Microbiol. 59 (1993) 2657-2665
33. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24 (1997) 4876-4882
34. Westphal A., and Becker J.O. Components of soil suppressiveness against Heterodera schachtii. Soil Biol. Biochem. 33 (2001) 9-16
35. White T.J., Bruns T.D., Lee S.B., and Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Gelfand M.A., Sninsky D.H., Innis J.J., and White T.J. (Eds). PCR Protocols: A Guide to Methods and Applications (1990), Acad Press, San Diego, CA 315-322
36. Wrather J.A., and Koenning S. Soybean disease effects on soybean yields in the United States 2003 to 2005. J. Nematol. 38 (2006) 173-180
37. Wu Z.H., Wang T.H., Huang W., and Qu Y.B. A simplified method for chromosome DNA preparation from filamentous fungi. Mycosystema 20 (2001) 575-577
38. Xiang M.C., Yang X.H., Wang Z.X., Liu X.Z., Chen S.Y., and Xiao Q.M. Variability of morphology, parasitism, and nucleotide sequences among isolates and species of nematophagous Hirsutella. Biol. Control 41 (2007) 110-119
39. Zhang L.M., Liu X.Z., Zhu S.F., and Chen S.Y. Detection of the nematophagous fungus Hirsutella rhossiliensis in soil by real-time PCR and parasitism bioassay. Biol. Control 36 (2006) 316-323
40. Zhou J., Bruns M.A., and Tiedje J.M. DNA recovery from soils of diverse composition. Appl. Environ. Microbiol. 62 (1996) 316-322