Using multiple sequence alignment editors and formatters

Cold Spring Harbor Protocols

Volumn 4, Issue 7, 2009, Pages

  Mount, David W ^a  

^a Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 73349104620     PISSN: None     EISSN: 15596095     Source Type: Journal    
DOI: 10.1101/pdb.top45     Document Type: Article

References (10)

1. Galtier N, Gouy M, Gautier C. 1996. SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny. Comput Applic Biosci 12: 543-548.
2. Lord PW, Selley N, Attwood TK. 2002. CINEMA-MX: A modular multiple alignment editor. Bioinformatics 18: 1402-1403.
3. Mount DW. 2008a. Using iterative methods for global multiple sequence alignment. Cold Spring Harb Protoc (this issue). doi: 10.1101/ pdb.top44.
4. Mount DW. 2008b. Using progressive methods for global multiple sequence alignment. Cold Spring Harb Protoc (this issue). doi: 10.1101/ pdb.top43.
5. Mount DW. 2008c. Using hidden Markov models to align multiple sequences. Cold Spring Harb Protoc (this issue). doi: 10.1101/pdb.top41.
6. Mount DW. 2008d. Comparing programs and methods to use for global multiple sequence alignment. Cold Spring Harb Protoc (this issue). doi: 10.1101/pdb.ip61.
7. Parry-Smith DJ, Payne AW, Michie AD, Attwood TK. 1998. CINEMA-A novel colour INteractive editor for multiple alignments. Gene 221: GC57-GC63.
8. Schuler GD, Altschul SF, Lipman DJ. 1991. A workbench for multiple alignment construction and analysis. Proteins 9: 180-190.
9. Smith SW, Overbeek R, Woese CR, Gilbert W, Gillevet PM. 1994. The genetic data environment and expandable GUI for multiple sequence analysis. Comput Appl Biosci 10: 671-675.
10. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.