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Volumn 9, Issue 23, 2009, Pages 5309-5315

The Interactorium: Visualising proteins, complexes and interaction networks in a virtual 3-D cell

Author keywords

Complexome; Networks; Protein protein interactions; Systems biology; Virtual cell

Indexed keywords

ALGORITHM; ARTICLE; CYTOLOGY; EUKARYOTE; MOLECULAR BIOLOGY; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; PROTEIN INTERACTION; SACCHAROMYCES CEREVISIAE; YEAST;

EID: 73249150731     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200900260     Document Type: Article
Times cited : (11)

References (15)
  • 1
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon, P., Markiel, A., Ozier, O., Baliga, N. S. et al., Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003, 13,2498-2504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4
  • 2
    • 34547586817 scopus 로고    scopus 로고
    • VisANT 3.0: New modules for pathway visualization, editing, prediction and construction
    • Hu, Z., Ng, D. M., Yamada, T., Chen, C. et al., VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Res. 2007, 35,W625-W632.
    • (2007) Nucleic Acids Res , vol.35
    • Hu, Z.1    Ng, D.M.2    Yamada, T.3    Chen, C.4
  • 3
    • 38649099068 scopus 로고    scopus 로고
    • Interactive threedimensional visualization and contextual analysis of protein interaction networks
    • Ho, E., Webber, R., Wilkins, M. R., Interactive threedimensional visualization and contextual analysis of protein interaction networks. J. Proteome Res. 2008, 7,104-112.
    • (2008) J. Proteome Res , vol.7 , pp. 104-112
    • Ho, E.1    Webber, R.2    Wilkins, M.R.3
  • 4
    • 0030123167 scopus 로고    scopus 로고
    • Evaluating stereo and motion cues for visualizing information nets in three dimensions
    • Ware, C., Franck, G., Evaluating stereo and motion cues for visualizing information nets in three dimensions. ACM Trans. Graph. 1996, 15, 121-140.
    • (1996) ACM Trans. Graph , vol.15 , pp. 121-140
    • Ware, C.1    Franck, G.2
  • 6
    • 40649092212 scopus 로고    scopus 로고
    • Toward a "Visible Cell" ... and beyond
    • Marsh, B. J., Toward a "Visible Cell" ... and beyond. Aust. Biochem. 2006, 37, 5-10.
    • (2006) Aust. Biochem , vol.37 , pp. 5-10
    • Marsh, B.J.1
  • 8
    • 0035478586 scopus 로고    scopus 로고
    • The Virtual Cell: A software environment for computational cell biology
    • Loew, L. M., Schaff, J. C., The Virtual Cell: a software environment for computational cell biology. Trends Biotechnol. 2001, 19, 401-406.
    • (2001) Trends Biotechnol , vol.19 , pp. 401-406
    • Loew, L.M.1    Schaff, J.C.2
  • 9
    • 0142184341 scopus 로고    scopus 로고
    • Global analysis of protein localization in budding yeast
    • Huh, W., Falvo, J. V., Gerke, L. C., Carroll, A. S. et al., Global analysis of protein localization in budding yeast. Nature 2003, 425, 686-691.
    • (2003) Nature , vol.425 , pp. 686-691
    • Huh, W.1    Falvo, J.V.2    Gerke, L.C.3    Carroll, A.S.4
  • 10
    • 0142215475 scopus 로고    scopus 로고
    • Global analysis of protein expression in yeast
    • Ghaemmaghami, S., Huh, W., Bower, K., Howson, R. W. et al., Global analysis of protein expression in yeast. Nature 2003, 425, 737-741.
    • (2003) Nature , vol.425 , pp. 737-741
    • Ghaemmaghami, S.1    Huh, W.2    Bower, K.3    Howson, R.W.4
  • 11
    • 33748377124 scopus 로고    scopus 로고
    • Quantification of protein half-lives in the budding yeast proteome
    • Belle, A., Tanay, A., Bitincka, L., Shamir, R. et al., Quantification of protein half-lives in the budding yeast proteome. Proc. Natl. Acad. Sci. USA 2006, 103, 13004-13009.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 13004-13009
    • Belle, A.1    Tanay, A.2    Bitincka, L.3    Shamir, R.4
  • 12
    • 34250345292 scopus 로고    scopus 로고
    • Confirmation of organized modularity in the yeast interactome
    • Bertin, N., Simonis, N., Dupuy, D., Cusick, M. E. et al., Confirmation of organized modularity in the yeast interactome. PLoS Biol. 2007, 5, e153.
    • (2007) PLoS Biol , vol.5
    • Bertin, N.1    Simonis, N.2    Dupuy, D.3    Cusick, M.E.4
  • 13
    • 34547787599 scopus 로고    scopus 로고
    • Hart, G. T., Lee, I., Marcotte, E. R., A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. Biomed Chromatogr. Bioinform. 2007, 8, 236.
    • Hart, G. T., Lee, I., Marcotte, E. R., A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. Biomed Chromatogr. Bioinform. 2007, 8, 236.
  • 15
    • 0001070640 scopus 로고
    • A heuristic for graph drawing
    • Eades, P., A heuristic for graph drawing. Congressus Numerantium 1984, 42, 149-160.
    • (1984) Congressus Numerantium , vol.42 , pp. 149-160
    • Eades, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.