-
1
-
-
84969213492
-
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
-
Wellcome Trust Case-Control Consortium.
-
Wellcome Trust Case-Control Consortium. (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature, 447, 661-678.
-
(2007)
Nature
, vol.447
, pp. 661-678
-
-
-
2
-
-
33751329250
-
Global variation in copy number in the human genome
-
Redon, R., Ishikawa, S., Fitch, K.R., Feuk, L., Perry, G.H., Andrews, T.D., Fiegler, H., Shapero, M.H., Carson, A.R., Chen, W. et al. (2006) Global variation in copy number in the human genome. Nature, 444, 444-454.
-
(2006)
Nature
, vol.444
, pp. 444-454
-
-
Redon, R.1
Ishikawa, S.2
Fitch, K.R.3
Feuk, L.4
Perry, G.H.5
Andrews, T.D.6
Fiegler, H.7
Shapero, M.H.8
Carson, A.R.9
Chen, W.10
-
3
-
-
36248980204
-
Characterizing the cancer genome in lung adenocarcinoma
-
Weir, B.A., Woo, M.S., Getz, G., Perner, S., Ding, L., Beroukhim, R., Lin, W.M., Province, M.A., Kraja, A., Johnson, L.A. et al. (2007) Characterizing the cancer genome in lung adenocarcinoma. Nature, 450, 893-898.
-
(2007)
Nature
, vol.450
, pp. 893-898
-
-
Weir, B.A.1
Woo, M.S.2
Getz, G.3
Perner, S.4
Ding, L.5
Beroukhim, R.6
Lin, W.M.7
Province, M.A.8
Kraja, A.9
Johnson, L.A.10
-
4
-
-
52949141845
-
Integrated detection and population-genetic analysis of SNPs and copy number variation
-
McCarroll, S.A., Kuruvilla, F.G., Korn, J.M., Cawley, S., Nemesh, J., Wysoker, A., Shapero, M.H., de Bakker, P.I., Maller, J.B., Kirby, A. et al. (2008) Integrated detection and population-genetic analysis of SNPs and copy number variation. Nat. Genet., 40, 1166-1174
-
(2008)
Nat. Genet.
, vol.40
, pp. 1166-1174
-
-
McCarroll, S.A.1
Kuruvilla, F.G.2
Korn, J.M.3
Cawley, S.4
Nemesh, J.5
Wysoker, A.6
Shapero, M.H.7
de Bakker, P.I.8
Maller, J.B.9
Kirby, A.10
-
5
-
-
52949085789
-
Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs
-
Korn, J.M., Kuruvilla, F.G., McCarroll, S.A., Wysoker, A., Nemesh, J., Cawley, S., Hubbell, E., Veitch, J., Collins, P.J., Darvishi, K. et al. (2008) Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs. Nat. Genet., 40, 1253-1260.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1253-1260
-
-
Korn, J.M.1
Kuruvilla, F.G.2
McCarroll, S.A.3
Wysoker, A.4
Nemesh, J.5
Cawley, S.6
Hubbell, E.7
Veitch, J.8
Collins, P.J.9
Darvishi, K.10
-
6
-
-
73149122153
-
-
Affymetrix. BRLMM: an improved genotying calling method for the GeneChip Human Mapping 500K Array Set. White Paper
-
Affymetrix. (2006) BRLMM: an improved genotying calling method for the GeneChip Human Mapping 500K Array Set. White Paper.
-
(2006)
-
-
-
7
-
-
20844440702
-
Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays
-
Di, X., Matsuzaki, H., Webster, T.A., Hubbell, E., Liu, G., Dong, S., Bartell, D., Huang, J., Chiles, R., Yang, G. et al. (2005) Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays. Bioinformatics, 21, 1958-1963.
-
(2005)
Bioinformatics
, vol.21
, pp. 1958-1963
-
-
Di, X.1
Matsuzaki, H.2
Webster, T.A.3
Hubbell, E.4
Liu, G.5
Dong, S.6
Bartell, D.7
Huang, J.8
Chiles, R.9
Yang, G.10
-
8
-
-
33746972191
-
Allele-specific amplification in cancer revealed by SNP array analysis
-
LaFramboise, T., Weir, B.A., Zhao, X., Beroukhim, R., Li, C., Harrington, D., Sellers, W.R. and Meyerson, M. (2005) Allele-specific amplification in cancer revealed by SNP array analysis. PLoS Comput. Biol., 1, e65.
-
(2005)
PLoS Comput. Biol.
, vol.1
-
-
LaFramboise, T.1
Weir, B.A.2
Zhao, X.3
Beroukhim, R.4
Li, C.5
Harrington, D.6
Sellers, W.R.7
Meyerson, M.8
-
9
-
-
22244453416
-
A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays
-
Nannya, Y., Sanada, M., Nakazaki, K., Hosoya, N., Wang, L., Hangaishi, A., Kurokawa, M., Chiba, S., Bailey, D.K., Kennedy, G.C. et al. (2005) A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays. Cancer Res., 65, 6071-6079.
-
(2005)
Cancer Res.
, vol.65
, pp. 6071-6079
-
-
Nannya, Y.1
Sanada, M.2
Nakazaki, K.3
Hosoya, N.4
Wang, L.5
Hangaishi, A.6
Kurokawa, M.7
Chiba, S.8
Bailey, D.K.9
Kennedy, G.C.10
-
10
-
-
27244449351
-
High-resolution identification of chromosomal abnormalities using oligonucleotide arrays containing 116,204 SNPs
-
Slater, H.R., Bailey, D.K., Ren, H., Cao, M., Bell, K., Nasioulas, S., Henke, R., Choo, K.H. and Kennedy, G.C. (2005) High-resolution identification of chromosomal abnormalities using oligonucleotide arrays containing 116,204 SNPs. Am. J. Hum. Genet., 77, 709-726.
-
(2005)
Am. J. Hum. Genet.
, vol.77
, pp. 709-726
-
-
Slater, H.R.1
Bailey, D.K.2
Ren, H.3
Cao, M.4
Bell, K.5
Nasioulas, S.6
Henke, R.7
Choo, K.H.8
Kennedy, G.C.9
-
11
-
-
33749145875
-
Non-linear analysis of GeneChip arrays
-
Abdueva, D., Skvortsov, D. and Tavare, S. (2006) Non-linear analysis of GeneChip arrays. Nucleic Acids Res., 34, e105.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Abdueva, D.1
Skvortsov, D.2
Tavare, S.3
-
12
-
-
33644942486
-
CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays
-
Huang, J., Wei, W., Chen, J., Zhang, J., Liu, G., Di, X., Mei, R., Ishikawa, S., Aburatani, H., Jones, K.W. et al. (2006) CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays. BMC Bioinformatics, 7, 83.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 83
-
-
Huang, J.1
Wei, W.2
Chen, J.3
Zhang, J.4
Liu, G.5
Di, X.6
Mei, R.7
Ishikawa, S.8
Aburatani, H.9
Jones, K.W.10
-
13
-
-
33747864545
-
GEL: a novel genotype calling algorithm using empirical likelihood
-
Nicolae, D.L., Wu, X., Miyake, K. and Cox, N.J. (2006) GEL: a novel genotype calling algorithm using empirical likelihood. Bioinformatics, 22, 1942-1947.
-
(2006)
Bioinformatics
, vol.22
, pp. 1942-1947
-
-
Nicolae, D.L.1
Wu, X.2
Miyake, K.3
Cox, N.J.4
-
14
-
-
30344454706
-
A genotype calling algorithm for Affymetrix SNP arrays
-
Rabbee, N. and Speed, T.P. (2006) A genotype calling algorithm for Affymetrix SNP arrays. Bioinformatics, 22, 7-12.
-
(2006)
Bioinformatics
, vol.22
, pp. 7-12
-
-
Rabbee, N.1
Speed, T.P.2
-
15
-
-
34147131753
-
PLASQ: a generalized linear model-based procedure to determine allelic dosage in cancer cells from SNP array data
-
LaFramboise, T., Harrington, D. and Weir, B.A. (2007) PLASQ: a generalized linear model-based procedure to determine allelic dosage in cancer cells from SNP array data. Biostatistics, 8, 323-336.
-
(2007)
Biostatistics
, vol.8
, pp. 323-336
-
-
LaFramboise, T.1
Harrington, D.2
Weir, B.A.3
-
16
-
-
34547830829
-
A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays
-
Xiao, Y., Segal, M.R., Yang, Y.H. and Yeh, R.F. (2007) A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays. Bioinformatics, 23, 1459-1467.
-
(2007)
Bioinformatics
, vol.23
, pp. 1459-1467
-
-
Xiao, Y.1
Segal, M.R.2
Yang, Y.H.3
Yeh, R.F.4
-
17
-
-
34147136617
-
Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
-
Carvalho, B., Bengtsson, H., Speed, T.P. and Irizarry, R.A. (2007) Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. Biostatistics, 8, 485-499.
-
(2007)
Biostatistics
, vol.8
, pp. 485-499
-
-
Carvalho, B.1
Bengtsson, H.2
Speed, T.P.3
Irizarry, R.A.4
-
18
-
-
40749162839
-
Estimation and assessment of raw copy numbers at the single locus level
-
Bengtsson, H., Irizarry, R., Carvalho, B. and Speed, T.P. (2008) Estimation and assessment of raw copy numbers at the single locus level. Bioinformatics, 24, 759-767.
-
(2008)
Bioinformatics
, vol.24
, pp. 759-767
-
-
Bengtsson, H.1
Irizarry, R.2
Carvalho, B.3
Speed, T.P.4
-
19
-
-
33847413173
-
Free energy of DNA duplex formation on short oligonucleotide microarrays
-
Zhang, L., Wu, C., Carta, R. and Zhao, H. (2007) Free energy of DNA duplex formation on short oligonucleotide microarrays. Nucleic Acids Res., 35, e18.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Zhang, L.1
Wu, C.2
Carta, R.3
Zhao, H.4
-
20
-
-
0038729666
-
A model of molecular interactions on short oligonucleotide microarrays
-
Zhang, L., Miles, M.F. and Aldape, K.D. (2003) A model of molecular interactions on short oligonucleotide microarrays. Nat. Biotechnol., 21, 818-821.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 818-821
-
-
Zhang, L.1
Miles, M.F.2
Aldape, K.D.3
-
21
-
-
33744542889
-
Relationship between gene expression and observed intensities in DNA microarrays-a modeling study
-
Held, G.A., Grinstein, G. and Tu, Y. (2006) Relationship between gene expression and observed intensities in DNA microarrays-a modeling study. Nucleic Acids Res., 34, e70.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Held, G.A.1
Grinstein, G.2
Tu, Y.3
-
22
-
-
0037934649
-
Modeling of DNA microarray data by using physical properties of hybridization
-
Held, G.A., Grinstein, G. and Tu, Y. (2003) Modeling of DNA microarray data by using physical properties of hybridization. Proc. Natl Acad. Sci. USA, 100, 7575-7580.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 7575-7580
-
-
Held, G.A.1
Grinstein, G.2
Tu, Y.3
-
23
-
-
10744221619
-
Large-scale genotyping of complex DNA
-
Kennedy, G.C., Matsuzaki, H., Dong, S., Liu, W.M., Huang, J., Liu, G., Su, X., Cao, M., Chen, W., Zhang, J. et al. (2003) Large-scale genotyping of complex DNA. Nat. Biotechnol., 21, 1233-1237.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1233-1237
-
-
Kennedy, G.C.1
Matsuzaki, H.2
Dong, S.3
Liu, W.M.4
Huang, J.5
Liu, G.6
Su, X.7
Cao, M.8
Chen, W.9
Zhang, J.10
-
24
-
-
0037316303
-
A comparison of normalization methods for high density oligonu-cleotide array data based on variance and bias
-
Bolstad, B.M., Irizarry, R.A., Astrand, M. and Speed, T.P. (2003) A comparison of normalization methods for high density oligonu-cleotide array data based on variance and bias. Bioinformatics, 19, 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
25
-
-
57249116888
-
Cross-hybridization modeling on Affymetrix exon arrays
-
Kapur, K., Jiang, H., Xing, Y. and Wong, W.H. (2008) Cross-hybridization modeling on Affymetrix exon arrays. Bioinformatics, 24, 2887-2893.
-
(2008)
Bioinformatics
, vol.24
, pp. 2887-2893
-
-
Kapur, K.1
Jiang, H.2
Xing, Y.3
Wong, W.H.4
-
26
-
-
33747587864
-
Model-based analysis of tiling-arrays for ChIP-chip
-
Johnson, W.E., Li, W., Meyer, C.A., Gottardo, R., Carroll, J.S., Brown, M. and Liu, X.S. (2006) Model-based analysis of tiling-arrays for ChIP-chip. Proc. Natl Acad. Sci. USA, 103, 12457-12462.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 12457-12462
-
-
Johnson, W.E.1
Li, W.2
Meyer, C.A.3
Gottardo, R.4
Carroll, J.S.5
Brown, M.6
Liu, X.S.7
-
27
-
-
0035793042
-
Model-based analysis of oligonu-cleotide arrays: expression index computation and outlier detection
-
Li, C. and Wong, W.H. (2001) Model-based analysis of oligonu-cleotide arrays: expression index computation and outlier detection. Proc. Natl Acad. Sci. USA, 98, 31-36.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
28
-
-
34347348166
-
Challenges and standards in integrating surveys of structural variation
-
Scherer, S.W., Lee, C., Birney, E., Altshuler, D.M., Eichler, E.E., Carter, N.P., Hurles, M.E. and Feuk, L. (2007) Challenges and standards in integrating surveys of structural variation. Nat. Genet., 39, S7-S15.
-
(2007)
Nat. Genet.
, vol.39
-
-
Scherer, S.W.1
Lee, C.2
Birney, E.3
Altshuler, D.M.4
Eichler, E.E.5
Carter, N.P.6
Hurles, M.E.7
Feuk, L.8
-
29
-
-
34347339520
-
Methods and strategies for analyzing copy number variation using DNA microarrays
-
Carter, N.P. (2007) Methods and strategies for analyzing copy number variation using DNA microarrays. Nat. Genet., 39, S16-S21.
-
(2007)
Nat. Genet.
, vol.39
-
-
Carter, N.P.1
-
30
-
-
56049110212
-
Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms
-
Diskin, S.J., Li, M., Hou, C., Yang, S., Glessner, J., Hakonarson, H., Bucan, M., Maris, J.M. and Wang, K. (2008) Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms. Nucleic Acids Res., 36, e126.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Diskin, S.J.1
Li, M.2
Hou, C.3
Yang, S.4
Glessner, J.5
Hakonarson, H.6
Bucan, M.7
Maris, J.M.8
Wang, K.9
-
31
-
-
42949174747
-
Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization
-
Marioni, J.C., Thorne, N.P., Valsesia, A., Fitzgerald, T., Redon, R., Fiegler, H., Andrews, T.D., Stranger, B.E., Lynch, A.G., Dermitzakis, E.T. et al. (2007) Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization. Genome Biol., 8, R228.
-
(2007)
Genome Biol.
, vol.8
-
-
Marioni, J.C.1
Thorne, N.P.2
Valsesia, A.3
Fitzgerald, T.4
Redon, R.5
Fiegler, H.6
Andrews, T.D.7
Stranger, B.E.8
Lynch, A.G.9
Dermitzakis, E.T.10
|