-
1
-
-
0034625143
-
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
-
Edwards JS, Palsson BO: 2000 The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities Proceedings of the National Academy of Sci. of the United States America 97 5528-5533
-
(2000)
Proceedings of the National Academy of Sci. of the United States America
, vol.97
, Issue.10
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
2
-
-
0021918026
-
Equations and calculations of product yields and preferred pathways for butanediol and mixed-acid fermentations
-
Papoutsakis ET, Meyer CL: 1985 Equations and calculations of product yields and preferred pathways for butanediol and mixed-acid fermentations Biotechnology Bioengineering 27 50-66
-
(1985)
Biotechnology Bioengineering
, vol.27
, Issue.1
, pp. 50-66
-
-
Papoutsakis, E.T.1
Meyer, C.L.2
-
3
-
-
3242658291
-
Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae
-
Jin YS, Jeffries TW: 2004 Stoichiometric network constraints on xylose metabolism by recombinant Saccharomyces cerevisiae Metab Eng 6 229-238
-
(2004)
Metab Eng
, vol.6
, Issue.3
, pp. 229-238
-
-
Jin, Y.S.1
Jeffries, T.W.2
-
4
-
-
0028146781
-
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia-coli W3110
-
Varma A, Palsson BO: 1994 Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia-coli W3110 Appl. Environmental Microbiology 60 3724-3731
-
(1994)
Appl. Environmental Microbiology
, vol.60
, pp. 3724-3731
-
-
Varma, A.1
Palsson, B.O.2
-
5
-
-
0027723421
-
Metabolic capabilities of Escherichia-coli. 2. Optimal-growth patterns
-
Varma A, Palsson BO: 1993 Metabolic capabilities of Escherichia-coli. 2. Optimal-growth patterns J. Theoretical Biology 165 503-522
-
(1993)
J. Theoretical Biology
, vol.165
, Issue.4
, pp. 503-522
-
-
Varma, A.1
Palsson, B.O.2
-
6
-
-
0027716622
-
Metabolic capabilities of Escherichia-coli.1. Synthesis of biosynthetic precursors and cofactors
-
Varma A, Palsson BO: 1993 Metabolic capabilities of Escherichia-coli.1. Synthesis of biosynthetic precursors and cofactors J. Theoretical Biology 165 477-502
-
(1993)
J. Theoretical Biology
, vol.165
, Issue.4
, pp. 477-502
-
-
Varma, A.1
Palsson, B.O.2
-
7
-
-
0035125986
-
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
-
Edwards JS, Ibarra RU, Palsson BO: 2001 In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data Nature Biotechnology 19 125-130
-
(2001)
Nature Biotechnology
, vol.19
, Issue.2
, pp. 125-130
-
-
Edwards, J.S.1
Ibarra, R.U.2
Palsson, B.O.3
-
8
-
-
58549108388
-
Reconstruction of Biochemical Networks in Microbial Organisms
-
Feist AM, Herrgard MJ, Thiele I, Reed JL, Palsson B: 2009 Reconstruction of Biochemical Networks in Microbial Organisms Nat Rev Microbiol 7 129-143
-
(2009)
Nat Rev Microbiol
, vol.7
, Issue.2
, pp. 129-143
-
-
Feist, A.M.1
Herrgard, M.J.2
Thiele, I.3
Reed, J.L.4
Palsson, B.5
-
9
-
-
63549108441
-
GrowMatch: An automated method for reconciling in silico/in vivo growth predictions
-
Kumar VS, Maranas CD: 2009 GrowMatch: an automated method for reconciling in silico/in vivo growth predictions PLoS Comput Biol 5 e1000308
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.3
, pp. 1000308
-
-
Kumar, V.S.1
Maranas, C.D.2
-
10
-
-
34547676311
-
Optimization based automated curation of metabolic reconstructions
-
Kumar VS, Dasika MS, Maranas CD: 2007 Optimization based automated curation of metabolic reconstructions BMC Bioinformatics 8 212
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 212
-
-
Kumar, V.S.1
Dasika, M.S.2
Maranas, C.D.3
-
11
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O: 2008 The RAST Server: rapid annotations using subsystems technology BMC Genomics 9 75
-
(2008)
BMC Genomics
, vol.9
, Issue.1
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
Dejongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
12
-
-
67650573077
-
IBsu1103: A new genome scale metabolic model of B. subtilis based on SEED annotations
-
Henry CS, Zinner J, Cohoon M, Stevens R: 2009 iBsu1103: a new genome scale metabolic model of B. subtilis based on SEED annotations Genome Biol in press
-
(2009)
Genome Biol
-
-
Henry, C.S.1
Zinner, J.2
Cohoon, M.3
Stevens, R.4
-
13
-
-
33845238737
-
Systematic assignment of thermodynamic constraints in metabolic network models
-
Kummel A, Panke S, Heinemann M: 2006 Systematic assignment of thermodynamic constraints in metabolic network models BMC Bioinformatics 7 512
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 512
-
-
Kummel, A.1
Panke, S.2
Heinemann, M.3
-
14
-
-
51049107514
-
Group contribution method for thermodynamic analysis of complex metabolic networks
-
Jankowski MD, Henry CS, Broadbelt LJ, Hatzimanikatis V: 2008 Group contribution method for thermodynamic analysis of complex metabolic networks Biophys J 95 1487-1499
-
(2008)
Biophys J
, vol.95
, Issue.3
, pp. 1487-1499
-
-
Jankowski, M.D.1
Henry, C.S.2
Broadbelt, L.J.3
Hatzimanikatis, V.4
-
15
-
-
34248632008
-
Toward the automated generation of genome-scale metabolic networks in the SEED
-
DeJongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A: 2007 Toward the automated generation of genome-scale metabolic networks in the SEED BMC Bioinformatics 8
-
(2007)
BMC Bioinformatics
, vol.8
-
-
Dejongh, M.1
Formsma, K.2
Boillot, P.3
Gould, J.4
Rycenga, M.5
Best, A.6
-
16
-
-
61449115916
-
A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189
-
Suthers PF, Dasika MS, Kumar VS, Denisov G, Glass JI, Maranas CD: 2009 A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189 PLoS Comput Biol 5 e1000285
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.2
, pp. 1000285
-
-
Suthers, P.F.1
Dasika, M.S.2
Kumar, V.S.3
Denisov, G.4
Glass, J.I.5
Maranas, C.D.6
-
17
-
-
0034661295
-
Recursive MILP model for finding all the alternate optima in LP models for metabolic networks
-
Lee S, Phalakornkule C, Domach MM, Grossmann IE: 2000 Recursive MILP model for finding all the alternate optima in LP models for metabolic networks Comput. Chem. Eng. 24 711-716
-
(2000)
Comput. Chem. Eng.
, vol.24
, Issue.2-7
, pp. 711-716
-
-
Lee, S.1
Phalakornkule, C.2
Domach, M.M.3
Grossmann, I.E.4
-
19
-
-
11844306574
-
The SEED: A peer-to-peer environment for genome annotation
-
Overbeek R, Disz T, Stevens R: 2004 The SEED: A peer-to-peer environment for genome annotation Commun. the Acm 47 46-51
-
(2004)
Commun. The Acm
, vol.47
, pp. 46-51
-
-
Overbeek, R.1
Disz, T.2
Stevens, R.3
-
20
-
-
77957035059
-
-
Seed Viewer - Home [http://seed-viewer.theseed.org/]
-
Seed Viewer - Home [http://seed-viewer.theseed.org/]
-
-
-
-
21
-
-
57649123534
-
Global phenotypic characterization of bacteria
-
Bochner BR: 2009 Global phenotypic characterization of bacteria Fems Microbiol Rev 33 191-205
-
(2009)
Fems Microbiol Rev
, vol.33
, Issue.1
, pp. 191-205
-
-
Bochner, B.R.1
-
22
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
Mahadevan R, Schilling CH: 2003 The effects of alternate optimal solutions in constraint-based genome-scale metabolic models Metab Eng 5 264-276
-
(2003)
Metab Eng
, vol.5
, Issue.4
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.H.2
-
24
-
-
11244299779
-
Industrial bioconversion of renewable resources as an alternative to conventional chemistry
-
Willke T, Vorlop KD: 2004 Industrial bioconversion of renewable resources as an alternative to conventional chemistry Appl. Microbiology Biotechnology 66 131-142
-
(2004)
Appl. Microbiology Biotechnology
, vol.66
, Issue.2
, pp. 131-142
-
-
Willke, T.1
Vorlop, K.D.2
-
25
-
-
8744224466
-
OptStrain: A computational framework for redesign of microbial production systems
-
Pharkya P, Burgard AP, Maranas CD: 2004 OptStrain: a computational framework for redesign of microbial production systems Genome Res 14 2367-2376
-
(2004)
Genome Res
, vol.14
, Issue.11
, pp. 2367-2376
-
-
Pharkya, P.1
Burgard, A.P.2
Maranas, C.D.3
-
26
-
-
0242487787
-
OptKnock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization
-
Burgard AP, Pharkya P, Maranas CD: 2003 OptKnock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization Biotechnology Bioengineering 84 647-657
-
(2003)
Biotechnology Bioengineering
, vol.84
, Issue.6
, pp. 647-657
-
-
Burgard, A.P.1
Pharkya, P.2
Maranas, C.D.3
-
27
-
-
33748959163
-
Essential genes on metabolic maps
-
Gerdes S, Edwards R, Kubal M, Fonstein M, Stevens R, Osterman A: 2006 Essential genes on metabolic maps Curr Opin Biotechnol 17 448-456
-
(2006)
Curr Opin Biotechnol
, vol.17
, Issue.5
, pp. 448-456
-
-
Gerdes, S.1
Edwards, R.2
Kubal, M.3
Fonstein, M.4
Stevens, R.5
Osterman, A.6
-
28
-
-
48049110998
-
Enhanced Recombinant Protein Productivity by Genome Reduction in Bacillus subtilis
-
Morimoto T, Kadoya R, Endo K, Tohata M, Sawada K, Liu S, Ozawa T, Kodama T, Kakeshita H, Kageyama Y, Manabe K, Kanaya S, Ara K, Ozaki K, Ogasawara N: 2008 Enhanced Recombinant Protein Productivity by Genome Reduction in Bacillus subtilis DNA Res 15 73-81
-
(2008)
DNA Res
, vol.15
, Issue.2
, pp. 73-81
-
-
Morimoto, T.1
Kadoya, R.2
Endo, K.3
Tohata, M.4
Sawada, K.5
Liu, S.6
Ozawa, T.7
Kodama, T.8
Kakeshita, H.9
Kageyama, Y.10
Manabe, K.11
Kanaya, S.12
Ara, K.13
Ozaki, K.14
Ogasawara, N.15
-
29
-
-
0036034078
-
A new mutation delivery system for genome-scale approaches in Bacillus subtilis
-
Fabret C, Ehrlich SD, Noirot P: 2002 A new mutation delivery system for genome-scale approaches in Bacillus subtilis Mol Microbiol 46 25-36
-
(2002)
Mol Microbiol
, vol.46
, Issue.1
, pp. 25-36
-
-
Fabret, C.1
Ehrlich, S.D.2
Noirot, P.3
|