The human large subunit ribosomal protein L36A-like contacts the CCA end of P-site bound tRNA

Biochimie

Volumn 91, Issue 11-12, 2009, Pages 1420-1425

  Baouz, Soria ^a   Woisard, Anne ^a   Sinapah, Sylvie ^a   Le Caer, Jean Pierre ^b   Argentini, Manuela ^b   Bulygin, Konstantin ^a,c   Aguié, Gustave ^a   Hountondji, Codjo ^a  

^a SORBONNE UNIVERSITÉ   (France)

^b INSTITUT DE CHIMIE DES SUBSTANCES NATURELLES   (France)

^c INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

Author keywords

Haloarcula marismortui ribosomal protein L44e; Human 80S ribosomes; Human ribosomal protein L36a like; P Site tRNA; Peptidyl transferase center; Periodate oxidized tRNA

Indexed keywords

LARGE SUBUNIT RIBOSOMAL RNA; PEPTIDYLTRANSFERASE; PERIODATE; RIBOSOME PROTEIN; TRANSFER RNA;

3' UNTRANSLATED REGION; ARTICLE; BINDING COMPETITION; BINDING SITE; CONTROLLED STUDY; COVALENT BOND; ENZYME MECHANISM; ENZYME SUBSTRATE; EUKARYOTE; GENETIC CONSERVATION; HALOARCULA MARISMORTUI; HUMAN; MASS SPECTROMETRY; OXIDATION; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN CROSS LINKING; RIBOSOME; RNA PROCESSING;

BASE PAIRING; BINDING SITES; ESCHERICHIA COLI; HUMANS; MODELS, MOLECULAR; RIBOSOMAL PROTEINS; RNA, TRANSFER;

EUKARYOTA; HALOARCULA MARISMORTUI;

EID: 73049111931     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2009.07.013     Document Type: Article

References (30)

1. Ban N., Nissen P., Hansen J., Moore P.B., and Steitz T.A. The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution. Science 289 (2000) 905-920
2. Nissen P., Hansen J., Ban N., Moore P.B., and Steitz T.A. The structural basis of ribosome activity in peptide bond synthesis. Science 289 (2000) 920-930
3. Steitz T.A., and Moore P.B. The first macromolecular catalyst: the ribosome is a ribozyme. Trends Biochem. Sci. 28 (2003) 411-418
4. Bulygin K., Favre A., Baouz-Drahy S., Hountondji C., Vorobjev Y., Ven'yaminova A., Graifer D., and Karpova G. Arrangement of 3'-terminus of tRNA on the human ribosome, as revealed from cross-linking data. Biochimie 90 (2008) 1624-1636
5. Khaitovich P., Mankin A.S., Green R., Lancaster L., and Noller H.F. Characterization of functionally active subribosomal particles from Thermus aquaticus. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 85-90
6. Wower J., Hixson S.S., and Zimmermann R.A. Labeling the peptidyltransferase center of the Escherichia coli ribosome with photoreactive tRNAPhe derivatives containing azidoadenosine at the 3' end of the acceptor arm: a model of the tRNA-ribosome complex. Proc. Natl. Acad. Sci. USA 86 (1989) 5232-5236
7. Wower I.K., Wower J., and Zimmermann R.A. Ribosomal protein L27 participates in both 50 S subunit assembly and the peptidyl transferase reaction. J. Biol. Chem. 273 (1998) 19847-19852
8. Kirillov S., Wower J., Hixson S.S., and Zimmermann R.A. Transit of tRNA through the Escherichia coli ribosome: cross-linking of the 3' end of tRNA to ribosomal proteins at the P and E sites. FEBS Lett. 514 (2002) 60-66
9. Maguire B.A., Beniaminov A.D., Ramu H., Mankin A.S., and Zimmermann R.A. A protein component at the heart of an RNA machine: the importance of protein L27 for the function of the bacterial ribosome. Mol. Cell 20 (2005) 427-435
10. Selmer M., Dunham C.M., Murphy F.V., Weixlbaumer A., Petry S., Kelley A.C., Weir J.R., and Ramakrishnan V. Structure of the 70S ribosome complexed with mRNA and tRNA. Science 313 (2006) 1935-1942
11. Trobro S., and Aqvist J. Role of ribosomal protein L27 in peptidyl transfer. Biochemistry 47 (2008) 4898-4906
12. Hountondji C., Fayat G., and Blanquet S. Complete inactivation and labeling of methionyl-tRNA synthetase by periodate-treated initiator tRNA in the presence of sodium cyanohydridoborate. Eur. J. Biochem. 102 (1978) 247-250
13. fMet. Biochemistry 24 (1985) 1175-1180
14. Hountondji C., Lederer F., Dessen P., and Blanquet S. Methionyl- and tyrosyl-tRNA synthetases from Escherichia coli, display sequence similarity at the binding site for the 3'-end of tRNA. Biochemistry 25 (1986) 16-21
15. Phe. Biochemistry 26 (1987) 5433-5439
16. Baouz S., Schmitter J.M., Chenoune L., Beauvallet C., Blanquet S., Woisard A., and Hountondji C. Primary structure revision and active site mapping of E. coli IsoleucyltRNA synthetase by means of maldi mass spectrometry. Open Biochem. J. 3 (2009) 26-38
17. Hountondji C., Dessen P., and Blanquet S. Sequence similarities among the family of aminoacyl-tRNA synthetases. Biochimie 68 (1986) 1071-1078
18. Matasova N.B., Myltseva S.V., Zenkova M.A., Graifer D.M., Vladimirov S.N., and Karpova G.G. Isolation of ribosomal subunits containing intact rRNA from human placenta: estimation of functional activity of 80S ribosomes. Anal. Biochem. 198 (1991) 219-223
19. Fayat G., Hountondji C., and Blanquet S. Complete inactivation and labeling of Methionyl-tRNA synthetase from Escherichia coli. Inactivation and labeling by periodate-treated initiator tRNA. Eur. J. Biochem. 96 (1979) 87-92
20. Cavusoglu N., Brand M., Tora L., and Van Dorsselaer A. Novel subunits of the TATA binding protein free TAFII-containing transcription complex identified by matrix-assisted laser desorption/ionization-time of flight mass spectrometry following one-dimensional gel electrophoresis. Proteomics 3 (2003) 217-223
21. Schilling-Bartetzko S., Franceschi F., Sternbach H., and Nierhaus K.H. Apparent association constants of tRNAs for the ribosomal A, P, and E sites. J. Biol. Chem. 267 (1992) 4693-4702
22. Davies M.S., Henney A., Ward W.H.J., and Craig R.K. Characterisation of an mRNA encoding a human ribosomal protein homologous to the yeast L44 ribosomal protein. Gene 45 (1986) 183-191
23. Gallagher M.J., Chan Y.L., Lin A., and Wool I.G. Primary structure of rat ribosomal protein L36a. DNA 7 (1988) 269-273
24. Wool I.G., Chan Y.L., and Glück A. Structure and evolution of mammalian ribosomal proteins. Biochem. Cell Biol. 73 (1995) 933-947
25. Fabijanski S., and Pellegrini M. Identification of proteins at the peptidyl-tRNA binding site of rat liver ribosomes. Mol. Gen. Genet. 184 (1981) 551-556
26. Klein D.J., Moore P.B., and Steitz T.A. The roles of ribosomal proteins in the structure assembly, and evolution of the large ribosomal subunit. J. Mol. Biol. 340 (2004) 141-177
27. Steitz T.A. A structural understanding of the dynamic ribosome machine. Nat. Rev. Mol. Cell. Biol. 9 (2008) 242-253
28. Korostelev A., Trakhanov S., Laurberg M., and Noller H.F. Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126 (2006) 1065-1077
29. Kim J.H., You K.R., Kim I.H., Cho B.H., Kim C.Y., and Kim D.G. Over-expression of the ribosomal protein L36a gene is associated with cellular proliferation in hepatocellular carcinoma. Hepatology 39 (2004) 129-138
30. Nishida J., Shiratsuchi A., Nadano D., Sato T., and Nakanishi Y. Structural change of ribosomes during apoptosis: degradation and externalization of ribosomal proteins in doxorubicin-treated Jurkat cells. J. Biochem. 131 (2002) 485-493