-
1
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Aug
-
N. A. Baker, D. Sept, S. Joseph, M. J. Holst, and J. A.McCammon. Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. National Academy of Sciences, 98(18):10037-10041, Aug 2001.
-
(2001)
Proc. National Academy of Sciences
, vol.98
, Issue.18
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
2
-
-
0033954256
-
The Protein Data Bank
-
H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne: The Protein Data Bank, Nucleic Acids Research, 28 pp. 235-242 (2000).
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
3
-
-
0042890523
-
Inferring functional relationships of proteins from local sequence and spatial surface patterns
-
A.T. Binkowski, L. Adamian, and J. Liang, "Inferring functional relationships of proteins from local sequence and spatial surface patterns", J. Mol. Biol., 2003, 332:505-526
-
(2003)
J. Mol. Biol
, vol.332
, pp. 505-526
-
-
Binkowski, A.T.1
Adamian, L.2
Liang, J.3
-
4
-
-
0018061331
-
-
J.F. Blinn, Simulation of Wrinkled Surfaces, Computer Graphics, 12 (3), pp. 286-292 SIGGRAPH-ACM (August 1978)
-
J.F. Blinn, "Simulation of Wrinkled Surfaces", Computer Graphics, Vol. 12 (3), pp. 286-292 SIGGRAPH-ACM (August 1978)
-
-
-
-
6
-
-
0000538815
-
Analytical molecular surface calculation
-
M. L. Connolly, Analytical molecular surface calculation. Applied Crystallography 16 (1983), 548-558.
-
(1983)
Applied Crystallography
, vol.16
, pp. 548-558
-
-
Connolly, M.L.1
-
7
-
-
0346494936
-
SURFACE : A database of protein surface regions for functional annotation
-
F. Ferre et al., "SURFACE : a database of protein surface regions for functional annotation", Nucleic Acids Research, 2004, Vol 32: D240- D244
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Ferre, F.1
-
8
-
-
14844299785
-
Software Extensions to UCSF Chimera for Interactive Visualization of Large Molecular Assemblies
-
T. Goddard, C. Huang, and T. Ferrin, "Software Extensions to UCSF Chimera for Interactive Visualization of Large Molecular Assemblies", Structure 13:473-482, 2005
-
(2005)
Structure
, vol.13
, pp. 473-482
-
-
Goddard, T.1
Huang, C.2
Ferrin, T.3
-
9
-
-
33750029942
-
Ligsite: Predicting Ligand Binding Sites Using the Connolly Surface and Degree of Conservation
-
B. Huang and M. Schroeder, "Ligsite: Predicting Ligand Binding Sites Using the Connolly Surface and Degree of Conservation", BMC Structural Biology, 6:19, 2006
-
(2006)
BMC Structural Biology
, vol.6
, pp. 19
-
-
Huang, B.1
Schroeder, M.2
-
11
-
-
34250090755
-
Snakes - Active Contour Models
-
M. Kass, A. Witkin, and D. Terzopoulos, "Snakes - Active Contour Models" International Journal of Computer Vision, 1(4): 321-331, 1987.
-
(1987)
International Journal of Computer Vision
, vol.1
, Issue.4
, pp. 321-331
-
-
Kass, M.1
Witkin, A.2
Terzopoulos, D.3
-
12
-
-
0028881975
-
A Program for Visualizing Molecular Surfaces, Cavities, and Intermolecular Interactions
-
SURFNET
-
R. A. Laskowski, SURFNET: A Program for Visualizing Molecular Surfaces, Cavities, and Intermolecular Interactions. J. Mol. Graph., 13:323-330, 1995.
-
(1995)
J. Mol. Graph
, vol.13
, pp. 323-330
-
-
Laskowski, R.A.1
-
13
-
-
41149093109
-
Characterization of local geometry of protein surfaces with the visibility criterion
-
B. Li et al. "Characterization of local geometry of protein surfaces with the visibility criterion", Proteins 71:670-683, 2008
-
(2008)
Proteins
, vol.71
, pp. 670-683
-
-
Li, B.1
-
14
-
-
0031687653
-
Anatomy of Protein Pockets and Cavities: Measurement of Binding Site Geometry and Implications for Ligand Design
-
J Liang, H. Edelsbrunner, C. Woodward, "Anatomy of Protein Pockets and Cavities: Measurement of Binding Site Geometry and Implications for Ligand Design", Protein Sci, 7:1884-1897, 1998
-
(1998)
Protein Sci
, vol.7
, pp. 1884-1897
-
-
Liang, J.1
Edelsbrunner, H.2
Woodward, C.3
-
15
-
-
0028919981
-
A Dynamic Finite Element Surface Model for Segmentation and Tracking in Multidimensional Medical Images with Application to Cardiac 4D Image Analysis
-
T. McInerney and D. Terzopolous. A Dynamic Finite Element Surface Model for Segmentation and Tracking in Multidimensional Medical Images with Application to Cardiac 4D Image Analysis. Comput Med Imag Graph, vol. 19, pp. 69-83, 1995.
-
(1995)
Comput Med Imag Graph
, vol.19
, pp. 69-83
-
-
McInerney, T.1
Terzopolous, D.2
-
16
-
-
0035827178
-
Surface Map Comparison: Studying Function Diversity of Homologous Proteins
-
K. Pawlowski and A. Godzik, "Surface Map Comparison: studying Function Diversity of Homologous Proteins", J. Mol. Biol., 2001, 309: 793 - 806
-
(2001)
J. Mol. Biol
, vol.309
, pp. 793-806
-
-
Pawlowski, K.1
Godzik, A.2
-
17
-
-
0017429069
-
Areas, volumes, packing and protein structure
-
F. M. Richards, "Areas, volumes, packing and protein structure," Annual Review of Biophysics and Bioengineering, 6, 1977, pp. 151-76.
-
(1977)
Annual Review of Biophysics and Bioengineering
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
-
18
-
-
34548833604
-
Surface Similarity-Based Molecular Query-Retrieval
-
July
-
R. Singh, Surface Similarity-Based Molecular Query-Retrieval, BMC Cell-Biology, Vol. 8, Suppl.1 (S6): July, 2007
-
(2007)
BMC Cell-Biology
, vol.8
, Issue.SUPPL.1 S6
-
-
Singh, R.1
-
19
-
-
14844293471
-
A Component-Based Software Environment for Visualizing Large Macromolecular Assemblies
-
M. Sanner, "A Component-Based Software Environment for Visualizing Large Macromolecular Assemblies", Structure 3(3):447-462, 2005
-
(2005)
Structure
, vol.3
, Issue.3
, pp. 447-462
-
-
Sanner, M.1
-
20
-
-
33947507003
-
Surf's Up! - Protein Classification by Surface Comparison
-
J. Sasin, A. Godzik, and J. Bujnicki, "Surf's Up! - Protein Classification by Surface Comparison", J. Biosci., 32(1), pp 97-100, 2007
-
(2007)
J. Biosci
, vol.32
, Issue.1
, pp. 97-100
-
-
Sasin, J.1
Godzik, A.2
Bujnicki, J.3
-
21
-
-
0036406643
-
A new method to detect related function among proteins independent of sequence and fold homology
-
S. Schmitt, D. Kuhn, and G. Klebe, "A new method to detect related function among proteins independent of sequence and fold homology", J. Mol. Biol., 2002, 323: 387 - 406.
-
(2002)
J. Mol. Biol
, vol.323
, pp. 387-406
-
-
Schmitt, S.1
Kuhn, D.2
Klebe, G.3
-
22
-
-
2542557409
-
Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces
-
Y. Tsuchiya, K. Kinoshita, and H. Nakamura, "Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces", PROTEINS: structure, Function, and Bioinformatics 55:885-894, 2004
-
(2004)
PROTEINS: Structure, Function, and Bioinformatics
, vol.55
, pp. 885-894
-
-
Tsuchiya, Y.1
Kinoshita, K.2
Nakamura, H.3
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