메뉴 건너뛰기




Volumn , Issue , 2009, Pages

Mining frequent dense subgraphs based on extending vertices from unbalanced PPI networks

Author keywords

Frequent dense pattern; PPI; Relative support; Unbalance

Indexed keywords

DATA SETS; DENSE PATTERNS; FALSE POSITIVE; FREQUENT DENSE PATTERN; FREQUENT PATTERNS; FUNCTIONAL INTERACTION; NOVEL ALGORITHM; PREDICTION OF PROTEIN FUNCTION; RECENT PROGRESS; SUBGRAPHS;

EID: 72749091324     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICBBE.2009.5163060     Document Type: Conference Paper
Times cited : (7)

References (23)
  • 1
    • 0021665479 scopus 로고
    • Pattern recognition in several sequences: Consensus and alignment
    • Waterman, M.S., Galas,D.J. and Arratia,R: Pattern recognition in several sequences: consensus and alignment. Bull. Math. Biol., 46, 515-527, 1984.
    • (1984) Bull. Math. Biol , vol.46 , pp. 515-527
    • Waterman, M.S.1    Galas, D.J.2    Arratia, R.3
  • 4
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith,T.F. and Waterman,M.S: Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197, 1981.
    • (1981) J. Mol. Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 5
    • 0025017156 scopus 로고
    • Finding sequence motifs in groups of functionally related proteins
    • Smith,H.O., Annau,T.M. and Chandrasegaran,S: Finding sequence motifs in groups of functionally related proteins. Proc. Natl Acad. Sci. USA, 87, pp. 826-830, 1990.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 826-830
    • Smith, H.O.1    Annau, T.M.2    Chandrasegaran, S.3
  • 6
    • 0029557778 scopus 로고
    • Searching for common sequence patterns among distantly related proteins
    • Suyama,M., Nishioka,T. and Jun'ichi,O: Searching for common sequence patterns among distantly related proteins. Protein Eng., 8, 1075-1080, 1995.
    • (1995) Protein Eng , vol.8 , pp. 1075-1080
    • Suyama, M.1    Nishioka, T.2    Jun'ichi, O.3
  • 7
    • 18744364920 scopus 로고    scopus 로고
    • Scalable Sequential Pattern Mining for Biological Sequences
    • November 13,,Washington,DC,USA
    • Ke Wang, Yabo Xu, Jeffrey Xu Yu: Scalable Sequential Pattern Mining for Biological Sequences. CIKM'04, November 13,2004,Washington,DC,USA.
    • (2004) CIKM'04
    • Wang, K.1    Xu, Y.2    Xu Yu, J.3
  • 8
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold R, Mann M: Mass spectrometry-based proteomics. Nature 2003,422: 198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 9
    • 27644576841 scopus 로고    scopus 로고
    • High-throughput two-hybrid analysis. The promise and the peril
    • Fields S: High-throughput two-hybrid analysis. The promise and the peril. FEBS J 2005,272: 5391-5399
    • (2005) FEBS J , vol.272 , pp. 5391-5399
    • Fields, S.1
  • 10
    • 28444499307 scopus 로고    scopus 로고
    • Mining closed relational graphs with connectivity Constraints
    • Boston, MA, March 30-April, IEEE Computer Society
    • Yan,X., Zhou,X. and Han,J: Mining closed relational graphs with connectivity Constraints. Proceedings of the International onference on Data Engineering, Boston, MA, March 30-April , 2005. IEEE Computer Society.
    • (2005) Proceedings of the International onference on Data Engineering
    • Yan, X.1    Zhou, X.2    Han, J.3
  • 11
    • 33745619564 scopus 로고    scopus 로고
    • Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinformatics2006
    • Chua HN, Sung WK,Wong L : Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinformatics2006, 22: 1623-1630
    • , vol.22 , pp. 1623-1630
    • Chua, H.N.1    Sung, W.K.2    Wong, L.3
  • 12
    • 29144442904 scopus 로고    scopus 로고
    • Whole proteome prediction of protein function via graph-theoretic analysis of interaction maps
    • Suppl 1, i302-i310
    • Nabieva E, Jim K, Agarwal A, Chazelle B, Singh M : Whole proteome prediction of protein function via graph-theoretic analysis of interaction maps. Bioinformatics 21 , 2005, (Suppl 1): i302-i310
    • (2005) Bioinformatics , vol.21
    • Nabieva, E.1    Jim, K.2    Agarwal, A.3    Chazelle, B.4    Singh, M.5
  • 13
    • 0742304254 scopus 로고    scopus 로고
    • Prediction of protein function using protein-protein interaction data
    • Deng M, Zhang K, Mehta S, Chen T, Sun F: Prediction of protein function using protein-protein interaction data. J Comput Biol , 2003 10:947-960
    • (2003) J Comput Biol , vol.10 , pp. 947-960
    • Deng, M.1    Zhang, K.2    Mehta, S.3    Chen, T.4    Sun, F.5
  • 14
    • 23844447959 scopus 로고    scopus 로고
    • Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data
    • Sharan R, Ideker T, Kelley B, Shamir R, Karp RM: Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. J Comput Biol 2005,12: 835-846
    • (2005) J Comput Biol , vol.12 , pp. 835-846
    • Sharan, R.1    Ideker, T.2    Kelley, B.3    Shamir, R.4    Karp, R.M.5
  • 16
    • 27544435126 scopus 로고    scopus 로고
    • Fast protein classification with multiple networks
    • Tsuda K, Shin H, Scholkopf B: Fast protein classification with multiple networks. Bioinformatics 21,2005 (Suppl 2): ii59-ii65
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 2
    • Tsuda, K.1    Shin, H.2    Scholkopf, B.3
  • 17
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • Spirin V, Mirny LA : Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci USA 2003, 100: 12123-12128.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12123-12128
    • Spirin, V.1    Mirny, L.A.2
  • 18
    • 1342330546 scopus 로고    scopus 로고
    • Functional topology in a network of protein interactions
    • Przulj N, Wigle DA, Jurisica I: Functional topology in a network of protein interactions. Bioinformatics 2004, 20: 340-348.
    • (2004) Bioinformatics , vol.20 , pp. 340-348
    • Przulj, N.1    Wigle, D.A.2    Jurisica, I.3
  • 19
    • 10244264813 scopus 로고    scopus 로고
    • Protein complex prediction via cost-based clustering
    • King AD, Przulj N, Jurisica I: Protein complex prediction via cost-based clustering. Bioinformatics 2004, 20: 3013-3020.
    • (2004) Bioinformatics , vol.20 , pp. 3013-3020
    • King, A.D.1    Przulj, N.2    Jurisica, I.3
  • 20
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    • Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A: Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006, 440: 637-643.
    • (2006) Nature , vol.440 , pp. 637-643
    • Krogan, N.J.1    Cagney, G.2    Yu, H.3    Zhong, G.4    Guo, X.5    Ignatchenko, A.6
  • 21
    • 23744481400 scopus 로고    scopus 로고
    • What do we learn from high-throughput protein interaction data?
    • Titz B., Schlesner M. and Uetz P: What do we learn from high-throughput protein interaction data? Expert Rev.Proteomics, 1(1), 111-121.
    • Expert Rev.Proteomics , vol.1 , Issue.1 , pp. 111-121
    • Titz, B.1    Schlesner, M.2    Uetz, P.3
  • 22
    • 29144474447 scopus 로고    scopus 로고
    • Mining coherent dense subgraphs across massive biological networks for functional discovery
    • Hu,H. et al: Mining coherent dense subgraphs across massive biological networks for functional discovery. Bioinformatics, 21 (Suppl. 1),2005, i213-i221.
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 1
    • Hu, H.1
  • 23
    • 34547852219 scopus 로고    scopus 로고
    • A graph-based approach to systematically reconstruct human transcriptional regulatory modules
    • Yan et al: A graph-based approach to systematically reconstruct human transcriptional regulatory modules. Bioinformatics, 23, 2007, i577-i586.
    • (2007) Bioinformatics , vol.23
    • Yan1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.