Analysis and comparison of the 4b core protein gene of avipoxviruses from wild birds: Evidence for interspecies spatial phylogenetic variation

Archives of Virology

Volumn 149, Issue 10, 2004, Pages 2035-2046

  Weli, S C ^a   Traavik, T ^a,b   Tryland, M ^a,c   Coucheron, D H ^a   Nilssen, O ^a  

^a UNIVERSITY OF TROMSØ   (Norway)

^b University of Tromsö   (Norway)

^c NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

CORE PROTEIN; VIRUS DNA;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BIRD; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FOWLPOX VIRUS; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; VIROLOGY;

AMINO ACID SEQUENCE; ANIMALS; AVIPOXVIRUS; BASE SEQUENCE; BIRDS; BLOTTING, SOUTHERN; DNA, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; VARIATION (GENETICS); VIRAL CORE PROTEINS;

AVES; AVIPOXVIRUS; FOWLPOX VIRUS; GALLIFORMES; PIGEONPOX VIRUS; POXVIRIDAE;

EID: 7244225097     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-004-0357-0     Document Type: Article

References (37)

1. Alfonso CL, Tulman ER, Lu Z, Zsak L, Kutish GF, Rock DL (2000) The genome of fowlpox virus. J Virol 74: 3815-3831
2. Amano H, Morikawa S, Shimizu H, Shoji I, Kurosawa D, Matsuura Y, Miyamura T, Ueda Y (1999) Identification of the canarypoxvirus thymidine kinase gene and insertion of foreign genes. Virology 256: 280-290
3. Binns MM, Boursnell MEG, Tomley FM, Campbell J (1989) Analysis of fowlpoxvirus gene encoding the 4b core polypeptide and demonstration that it posseses efficient promoter sequences. Virology 170: 288-291
4. Chiu W-L, Chang W (2002) Vaccinia virus J1R protein: a viral membrane protein that is essential for virion morphogenesis. J Virol 76: 9575-9587
5. Chung YS, Spradbrow PB (1977) Studies on poxvirus isolated from a magpie in Queensland. Aust Vet J 53: 334-336
6. Coupar BEH, Teo T, Boyle DB (1990) Restriction endonucleases mapping of the fowlpoxvirus genome. Virology 179: 159-167
7. Damaso CRA, Moussatché N (1998) Inhibition of vaccinia virus replication by cyclosporin A analogues correlates with their affinity for cellular cyclophilins. J Gen Virol 79: 339-346
8. Felsenstein J (1983) Interfering evolutionary tree DNA sequences. In: Weir BS (ed). Statistical analysis of DNA sequence data. Marcel Dekker, New York, pp 133-150
9. Felsenstein J (1988) Phylogenesis from molecular sequences: Inference and reliability. Ann Rev Gene 22: 251-265
10. Ghildyal N, Schnitzlein WM, Tripathy DN (1989) Genetic and antigenic differences between fowlpox and quailpox viruses. Arch Virol 106: 85-92
11. Hansen H, Sandvik T, Tryland M, Olsvik O, Traavik T (1999) Comparison of thymidine kinase and A-type inclusion protein gene sequences from Norwegian and Swedish Cowpoxvirus isolates. APMIS 107: 667-675
12. Hertig C, Pauli U, Zanoni R, Peterhans E (1991) Detection of bovine viral diarrhea virus using the polymerase chain reaction. Vet Microbiol 26: 65-76
13. Holt G, Krogsrud J (1973) Pox in wild birds. Act Vet Scand 14: 201-203
14. Ikeda K, Nagaoka S, Winkler S, Kotani K, Yagi H, Nakanishi K, Miyajima S, Kobayashi J, Mori H (2001) Molecular characterization of Bombyx mon cytoplasmic polyhedrosis virus genome segment 4. J Virol 75: 988-995
15. Kaneko S, Miller RH, Feinston SM, Unoura M, Kobayashi K, Haltori N, Purcell RH (1989) Detection of serum hepatitis B virus DNA in patients with chronic hepatitis using the polymerase chain reaction assay. PNAS USA 86: 312-316
16. Katz E, Moss B (1970a) Formation of a vaccinia virus structural polypeptide from a high molecular weight precursor: inhibition of rifampicin. PNAS USA 66: 677-684
17. Katz E, Moss B (1970b) Vaccinia virus structural polypeptide derived from a high molecular weight precursor: formation and integration into virus particles. J Virol 6: 717-726
18. Kauffman E, Bublot M, Gettig R, Limbach K, Pincus S, Taylor J (2001) Live viral vectors. In: Ellis RW (ed), New vaccine technologies. Biochem Pharma Inc., Northborough, MA, USA, pp 303
19. Kent S, Zhao A, Best S, Chandler J, Boyle D, Ramshaw I (1998) Enhanced T-cell immunogenicity and protective efficacy of human immunodeficiency virus type-1 vaccine regimen consisting of consecutive priming with DNA and boosting with recombinant fowlpoxvirus. J Virol 72: 10180-10188
20. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245
21. Lee P, Hruby DE (1993) Trans processing of vaccinia virus core proteins. J Virol 67: 4252-4263
22. Lee L-H, Lee K-H (1997) Application of the polymerase chain reaction for the diagnosis of fowlpoxvirus infection. J Virol Methods 63: 113-119
23. Lee LH, Lukert PD (1986) Adaptation and antigenic variation of infectious bursal disease virus. J Chin Soc Vet Sci 12: 297-304
24. Mockett B, Binns MM, Boursnell MEG, Skinner MA (1992) Comparison of the locations of homologous fowlpox and vaccinia virus genes reveals major genome reorganization. J Gen Virol 73: 2661-2668
25. Moss B (1990) Poxviridae and their replication. In: Fields BN, Knipe DM (eds) Virology. Raven Press, New York, pp 2079-2112
26. Muller HK, Wittek R, Schaffner W, Schümperli D, Menna A, Wyler R (1978) Comparison of five poxvirus genomes by analysis with restriction endonucleases HindIII, BamHI and EcoRI. J Gen Virol 38: 135-147
27. Nault LR (1994) Transmission biology, vector specificity, and evolution of planthopper transmitted plant viruses. In: Denno RF (ed), Planthoppers. Chapman and Hall, New York, pp 429-448
28. Ou CY, Kwork S, Mitchell SW, Mack DH, Sninsky JJ, Krebs JW, Feorine P, Warfield D, Schochetman G (1988) DNA amplification for detection of human immunodeficiency virus-1 (HIV-1) in DNA of peripheral blood mononuclear cells. Science 239: 295-297
29. Paoletti E (1996) Application of poxvirus vectors: an update. PNAS USA 93: 11349-11353
30. Sambrook JS, Fritsch EF, Maniatis T (1989) Molecular cloning: A laboratory manual. Cold Spring Harbour Laboratory Press, Cold Spring Harbour, N.Y
31. Schümperli D, Lagadec R, Müller HK (1978) DNA homology estimation by combinatorial analysis of endonuclease restriction data. J Gen Virol 38: 161-166
32. Strimmer K, Von Haeseler A (1996) Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13: 964-969
33. Schnitzlein WM, Ghildyal N, Tripathy DN (1988) Genomic and antigenic characterization of avipoxvirus. Virus Res 10: 65-76
34. Swofford DL (2002) PAUP*. Phylogenetic analyses using parsimony (and other methods). Version 4. Sinauer associates, Sunderland, MA
35. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL X windows interface: Flexible strategies for multiple sequences alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882
36. Tripathy DN (1991) Pox. In: Calnek BW, Barnes HJ, Beard CW, Reid WM, Yoder HW Jr (eds) Diseases of poultry. Iowa State University Press, Ames, Iowa, pp 583-596
37. Van Slyke JK, Franke CA, Hruby DE (1991) Proteolytic maturation of vaccinia virus core proteins: identification of a consensus motif at the N-termini of the 4b and 25k virion proteins. J Gen Virol 72: 411-419