Interacting with the biomolecular solvent accessible surface via a haptic feedback device

BMC Structural Biology

Volumn 9, Issue , 2009, Pages

  Stocks, Matthew B ^a   Hayward, Steven ^a   Laycock, Stephen D ^a  

^a UNIVERSITY OF EAST ANGLIA   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL DEHYDROGENASE; OXYGEN; ACETYLCHOLINESTERASE; SOLVENT;

ARTICLE; ATOM; BIOMOLECULAR ELECTRONICS; COMPUTER PROGRAM; CRYSTALLOGRAPHY; ENTROPY; FEEDBACK SYSTEM; HYDROGEN BOND; LIVER; MOLECULE; STEREOSCOPIC VISION; ALGORITHM; CHEMISTRY; COMPUTER GRAPHICS; COMPUTER SIMULATION; ENZYME ACTIVE SITE; THREE DIMENSIONAL IMAGING;

ACETYLCHOLINESTERASE; ALCOHOL DEHYDROGENASE; ALGORITHMS; CATALYTIC DOMAIN; COMPUTER GRAPHICS; COMPUTER SIMULATION; FEEDBACK; IMAGING, THREE-DIMENSIONAL; SOFTWARE; SOLVENTS;

EID: 72249108167     PISSN: None     EISSN: 14726807     Source Type: Journal    
DOI: 10.1186/1472-6807-9-69     Document Type: Article

References (14)

1. Packing of -helices: Geometrical constraints and contact areas. TJ Richmond FM Richards, J Mol Biol 1978 119 4 537 555 10.1016/0022-2836(78)90201-2 642001
2. Solvent-accessible surfaces of proteins and nucleic acids. M Connolly, Science 1983 221 4612 709 713 10.1126/science.6879170 6879170
3. Project GROPE Haptic displays for scientific visualization. FP Brooks M Ouh-Young JJ Batter PJ Kilpatrick, 1990 24 4 177 185
4. Concept and prototype of protein-ligand docking simulator with force feedback technology. H Nagata, Bioinformatics 2002 18 140 146 10.1093/bioinformatics/18.1.140 11836222
5. Role of haptics in teaching structural molecular biology. G Sankaranarayanan S Weghorst M Sanner A Gillet A Olson, Proceedings. 11th Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems 2003 363 366 full-text
6. A System for Interactive Molecular Dynamics Simulation. J Stone J Gullingsrud P Grayson K Schulten, ACM SIGGRAPH 2001 191 194
7. A constraint-based god-object method for haptic display. CB Zilles JK Salisbury, IROS '95 1995 3 146 151
8. Efficient point-based rendering techniques for haptic display of virtual objects. C Basdogan MA Srinivasan, Presence 1999 8 477 491 10.1162/ 105474699566413
9. A Haptic Rendering Algorithm for Molecular Interaction. MB Stocks SD Laycock, Eurographics Workshop on Visual Computing for Biomedicine (2008) 2008 163 169
10. The "Bubble" Technique: Interacting with Large Virtual Environments Using Haptic Devices with Limited Workspace. L Dominjon A Lecuyer JM Burkhardt G Andrade-Barroso S Richir, WHC '05: Proceedings of the First Joint Eurohaptics Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems Washington, DC, USA: IEEE Computer Society 2005 639 640
11. Crystallographics Studies of 2 Alcohol Dehydrogenase-bound analogs of Thiazole-4-Antitumor Adenine-Dinucleotide (TAD), the active anabolite of the antitumor agent tiazofurin. H Li W Hallows V Marquez H Carrell K Pankiewicz K Watanabe B Goldstein, Biochemistry 1994 33 23 32 10.1021/bi00167a004 8286346
12. Molecular Dynamics Simulations of NAD+Induced Domain Closure in Horse Liver Alcohol Dehydrogenase. S Hayward A Kitao, Biophys J 2006 91 1823 1831 10.1529/biophysj.106.085910 16714351
13. Refined Crystal-Structure of Liver Alcohol-Dehydrogenase NADH complex at 1.8-angstrom resolution. S Alkaradaghi E Cedergrenzeppezauer S Hovmoller K Petratos H Terry K Wilson, ACTA Crystallographica Section D-Biological Crystallography 1994 50 6 793 807 10.1107/S0907444994005263 (Pubitemid 2161254)
14. Reaction Products of Acetylcholinesterase and VX Reveal a Mobile Histidine in the Catalytic Triad. C Millard G Koellner A Ordentlich A Shafferman I Silman J Sussman, Journal of the American Chemical Society 121 42 9883 9884 10.1021/ja992704i