Coastal thin layer dynamics: Consequences to biology and optics

Continental Shelf Research

Volumn 30, Issue 1, 2010, Pages 50-65

  Sullivan, James M ^a   Donaghay, Percy L ^a   Rines, Jan E B ^a  

^a UNIVERSITY OF RHODE ISLAND   (United States)

Author keywords

Dinoflagellates; HABs; Optics; Thin layers; Turbulence; Vertical migration

Indexed keywords

BIOPHYSICS; COASTAL ZONE; DIATOM; DINOFLAGELLATE; OPTICAL INSTRUMENT; PHYTOPLANKTON; SPATIOTEMPORAL ANALYSIS; TURBULENCE; VERTICAL MIGRATION;

CALIFORNIA; MONTEREY BAY; NORTH AMERICA; UNITED STATES;

AKASHIWO SANGUINEA; ALEXANDRIUM CATENELLA; BACILLARIOPHYTA; DINOPHYCEAE; PSEUDO-NITZSCHIA;

EID: 72149127153     PISSN: 02784343     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.csr.2009.07.009     Document Type: Article

References (73)

1. Aas E. Refractive index of phytoplankton derived from its metabolite composition. Journal of Plankton Research 18 12 (1996) 2223-2249
2. Ackleson S.G., and Spinrad R.W. Size and refractive index of individual marine particulates: a flow cytometric approach. Applied Optics 27 (1988) 1270-1277
3. Alldredge A.L., Cowles T.J., MacIntyre S., Rines J.E.B., Donaghay P.L., Greenlaw C.F., Holliday D.V., Dekshenieks M.M., Sullivan J.M., and Zaneveld. R.V. Occurrence and mechanisms of formation of a dramatic thin layer of marine snow in a shallow Pacific fjord. Marine Ecology Progress Series 233 (2002) 1-12
4. Barth J.A., Menge B.A., Lubchenco J., Chan F., Bane J., Kirincich A., McManus M., Nielsen K.J., Pierce S.D., and Washburn L. Delayed upwelling alters nearshore coastal ocean ecosystems in the northern California current. Proceedings of the National Academy of Sciences (USA) 104 (2007) 3719-3724
5. Berdalet E. Effects of turbulence on the marine dinoflagellate Gymnodinium nelsonii. Journal of Phycology 28 (1992) 267-272
6. Berdalet E., and Estrada M. Effects of turbulence on several dinoflagellate species. In: Smayda T.J., and Shimizu Y. (Eds). Toxic Phytoplankton in the Sea (1993), Elsevier, Amsterdam 737-741
7. Balch W.M., Holligan P.M., Ackelson S.G., and Voss K.J. Biological and optical properties of mesoscale coccolithophore blooms in the Gulf of Maine. Limnology and Oceanography 36 4 (1991) 629-643
8. Boss E., and Pegau W.S. Relationship of light scattering at an angle in the backward direction to the backscattering coefficient. Applied Optics 40 (2001) 5503-5507
9. Boss E., Pegau W.S., Gardner W.D., Zaneveld J.R.V., Barnard A.H., Twardowski M.S., Chang G.C., and Dickey T.D. Spectral particulate attenuation and particle size distribution in the bottom boundary layer of a continental shelf. Journal of Geophysical Research 106 C5 (2001) 9509-9516
10. Boss E., Pegau W.S., Lee M., Twardowski M., Shybanov E., Korotaev G., and Baratange F. Particulate backscattering ratio at LEO 15 and its use to study particle composition and distribution. Journal of Geophysical Research 109 (2004) C01014
11. Bricaud A., Babin M., Morel A., and Claustre H. Variability in the chlorophyll-specific absorption coefficients of natural phytoplankton: analysis and parameterization. Journal of Geophysical Research 100 (1995) 13321-13332
12. Brown C., and Yoder J. Coccolithophorid blooms in the global ocean. Journal of Geophysical Research 99 C4 (1994) 7467-7482
13. Carder K.L., Tomlinson R.D., and Beardsley G.F. A technique for the estimation of indices of refraction of marine phytoplankters. Limnology and Oceanography 17 6 (1972) 833-839
14. Claustre H., Bricaud A., Babin M., Bruyant F., Guillou L., Le Gall F., Marie D., and Partensky F. Diel variations in Prochlorococcus optical properties. Limnology and Oceanography 47 6 (2002) 1637-1647
15. Cloern J.E., Schraga T.S., Lopez C.B., Knowles N., Labiosa R.G., and Dugdale R. Climate anomalies generate an exceptional dinoflagellate bloom in San Francisco Bay. Geophysical Research Letters 32 (2005) L14608
16. Cowles T.J., Desiderio R.A., and Carr M.E. Small-scale planktonic structure: persistence and trophic consequences. Oceanography 11 (1998) 4-9
17. Dekshenieks M.M., Donaghay P.L., Sullivan J.M., Rines J.E.B., Osborn T.R., and Twardowski M.S. Temporal and spatial occurrence of thin phytoplankton layers in relation to physical processes. Marine Ecology Progress Series 223 (2001) 61-71
18. Donaghay P.L., Rines H.M., and Sieburth J.M. Simultaneous sampling of fine scale biological, chemical and physical structure in stratified waters. Archiv für Hydrobiologie 36 (1992) 97-108
19. Donaghay P.L. Profiling systems for understanding the dynamics and impacts of thin layers of harmful algae in stratified coastal waters. Proceedings of the 4th Irish Marine Biotoxin Science Workshop (2004) 44-53
20. Dugdale R.C., Goering J.J., Barber R.T., Smith R.L., and Packard T.T. Denitrification and hydrogen sulfide in the Peru upwelling region during 1976. Deep Sea Research 24 (1977) 601-608
21. Goodman L., and Wang Z. Turbulence observations in the northern bight of Monterey Bay from a small AUV. Journal of Marine Systems 77 4 (2009) 441-458
22. Graham W.M., and Largier J.L. Upwelling shadows as nearshore retention sites: the example of northern Monterey Bay. Continental Shelf Research 17 5 (1997) 509-532
23. Hanson Jr. A.K., and Donaghay P.L. Micro-to fine-scale chemical gradients and layers in stratified coastal waters. Oceanography 11 (1998) 10-17
24. Havskum H., and Hansen P.J. Net growth of the bloom-forming dinoflagellate Heterocapsa triquetra and pH: why turbulence matters. Aquatic Microbial Ecology 42 1 (2006) 55-62
25. Holliday D.V., Donaghay P.L., Greenlaw C.F., McGehee D.E., McManus M.M., Sullivan J.M., and Miksis J.L. Advances in defining fine-and micro-scale pattern in marine plankton. Aquatic Living Resources 16 (2003) 131-136
26. Holliday, D.V., Donaghay, P.L., Greenlaw, C.F., Napp, J.M., Sullivan, J.M., 2009. High-frequency acoustics and bio-optics in ecosystems research. ICES Journal of Marine Science 66, 974-980.
27. Holliday, D.V., Greenlaw, C.F., Donaghay, P.L., 2010. Acoustic scattering in the coastal ocean at Monterey Bay, CA USA: Fine-scale vertical structures. Continental Shelf Research, this issue.
28. Hulot F.D., and Huisman J. Allelopathic interactions between phytoplankton species: the roles of heterotrophic bacteria and mixing intensity. Limnology and Oceanography 49 4 (2004) 1424-1434
29. Jessup D.A., Miller M.A., Ryan J.P., Nevins H.M., Kerkering H.A., Mekebri A., Crane D.B., Johnson T.A., and Kudela R.M. Mass stranding of marine birds caused by a surfactant-producing red tide. Public Library of Science ONE 4 2 (2009) e4550 10.1371/journal.pone.0004550
30. Juhl A.R., and Latz M.I. Mechanisms of fluid-shear-induced inhibition of population growth in a red-tide dinoflagellate. Journal of Phycology 38 (2002) 683-694
31. Kamykowski D., McCollum S.A., and Kirkpatrick G.J. Observations and a model concerning the translational velocity of a photosynthetic marine dinoflagellate under variable environmental conditions. Limnology and Oceanography 33 1 (1988) 66-78
32. Kamykowski D., Reed R.E., and Kirkpatrick G.J. Comparison of sinking velocity, swimming velocity, rotation and path characteristics among six marine dinoflagellate species. Marine Biology 113 2 (1992) 319-328
33. Kamykowski D., and Yamazaki H. A study of metabolism-influenced orientation in the diel vertical migration of marine dinoflagellates. Limnology and Oceanography 42 5 (1997) 1189-1202
34. Kamykowski D., Milligan E.J., and Reed R.E. Relationships between geotaxis/phototaxis and diel vertical migration in autotrophic dinoflagellates. Journal of Plankton Research 20 9 (1998) 1781-1796
35. Karp-Boss L., Boss E., and Jumars P.A. Motion of dinoflagellates in simple shear flow. Limnology and Oceanography 45 (2000) 1594-1602
36. Lasker R. Field criteria for survival of anchovy larvae: the relation between inshore chlorophyll maximum layers and successful first feeding. Fisheries Bulletin 73 3 (1975) 453-462
37. Lide D.R. Physical and Optical Properties of Minerals. CRC Handbook of Chemistry and Physics. 77th Ed (1997), CRC Press, Boca Raton, FL (1997, pp. 4,130-4, 136)
38. Lohrmann A., Cabrera R., Gelfenbaum G., and Haines J. Direct measurement of Reynolds stress with an acoustic Doppler velocimeter. Proceedings of the IEEE Fifth Working conference on Current Measurements (1995) 205-210 (February 1995)
39. McManus M.A., Alldredge A.L., Barnard A., Boss E., Case J., Cowles T.J., Donaghay P.L., Eisner L., Gifford D.J., Greenlaw C.F., Herren C., Holliday D.V., Johnson D., MacIntyre S., McGehee D., Osborn T.R., Perry M.J., Pieper R., Rines J.E.B., Smith D.C., Sullivan J.M., Talbot M.K., Twardowski M.S., Weidemann A., and Zaneveld J.R.V. Changes in characteristics, distribution and persistence of thin layers over a 48-hour period. Marine Ecology Progress Series 261 (2003) 1-19
40. McManus M., Kudela R.M., Silver M.W., Steward G.F., Donaghay P.L., and Sullivan J.M. Cryptic blooms: are thin layers the missing connection?. Estuaries and Coasts 31 (2008) 396-401
41. Møgelhøj M.K., Hansen P.J., Henriksen P., and Lundholm N. High pH and not allelopathy may be responsible for negative effects of Nodularia spumigena on other algae. Aquatic Microbial Ecology 43 (2006) 43-54
42. Moore, C., Twardowski, M.S., Zaneveld, J.R.V., 2000. The ECO VSF-A multi-angle scattering sensor for determination of the volume scattering function in the backward direction. Ocean Optics XV, Monaco, October 16-20.
43. Mullin M.M., and Brooks E.R. Some consequences of distributional heterogeneity of phytoplankton and zooplankton. Limnology and Oceanography 21 (1976) 784-796
44. Park M.G., Cooney S.K., Kim J.S., and Wayne Coats D. Effects of parasitism on diel vertical migration, phototaxis/geotaxis, and swimming speed of the bloom-forming dinoflagellate Akashiwo sanguinea. Aquatic Microbial Ecology 29 (2002) 11-18
45. Passow U. Vertical migration of Gonyaulax catenata and Mesodinium rubrum. Marine Biology 110 (1991) 455-463
46. Petrenko A.A., Zaneveld J.R.V., Pegau W.S., Barnard A.H., and Mobley C.D. Effects of a thin layer on reflectance and remote-sensing reflectance. Oceanography 11 (1998) 48-50
47. Peperzak L. Below the Kolmogorov scale: the non-turbulent sex life of phytoplankton. African Journal of Marine Science 28 2 (2006) 261-264
48. Rines J.E.B., Donaghay P.L., Dekshenieks M.M., Sullivan J.M., and Twardowski M.S. Thin layers and camouflage: hidden Pseudo-nitzschia populations in a fjord in the San Juan Islands, Washington, USA. Marine Ecology Progress Series 225 (2002) 123-137
49. Rines, J.E.B., McFarland, M., Donaghay, P.L., Sullivan, J.M., 2010. Thin layers and species-specific characterization of the phytoplankton community in Monterey Bay, California USA. Continental Shelf Research, this issue.
50. Roberts A.M. Hydrodynamics of protozoan swimming. In: Levandowsky M., and Hunter S. (Eds). Biochemistry and Physiology of Protozoa Vol. 4 (1981), Academic
51. Ryan J.P., McManus M.A., Paduan J.D., and Chavez F.P. Phytoplankton thin layers caused by shear in frontal zones of a coastal upwelling system. Marine Ecology Progress Series 354 (2008) 21-34
52. Ryan, J.P., McManus, M. A., Sullivan, J.M., 2010. Physical, chemical and biological forcing of phytoplankton thin-layer variability in Monterey Bay, California. Continental Shelf Research, this issue.
53. Smayda T.J., and Reynolds C.S. Community assembly in marine phytoplankton: application of recent models to harmful dinoflagellate blooms. Journal of Plankton Research 23 (2000) 447-461
54. Smayda T.J. Turbulence water mass stratification and harmful algal blooms: an alternative view and frontal zones as pelagic seed banks. Harmful Algae 1 (2002) 95-112
55. Stacey M.T., McManus M., and Steinbuck J.V. Convergences and divergences and thin layer formation and maintenance. Limnology and Oceanography 52 4 (2007) 1523-1532
56. Stramski D., and Reynolds R.A. Diel variations in the optical properties of a marine diatom. Limnology and Oceanography 38 7 (1993) 1347-1364
57. Sullivan, J.M., Donaghay, P.L., Dekshenieks, M.M., 1999. Examination of the temporal and spatial coherence of optical thin-layers using autonomous profilers. Proceedings of the AGU-ASLO Ocean Sciences Meeting, Santa Fe, NM, 1-5 February.
58. Sullivan, J. M., Donaghay, P. L., Moore, C., Zanevald, J. R., Hanson, A. K., Davis-Lunde, K., Greene, R. M., Weidemann, A. D., 2002. Ocean Response Coastal Analysis System (ORCAS). AGU-ASLO Ocean Sciences Meeting, Feb. 11-15, Honolulu, HI.
59. Sullivan J.M., Swift E., Donaghay P.L., and Rines J.E.B. Small-scale turbulence affects the division rate and morphology of two red-tide dinoflagellates. Harmful Algae 2 3 (2003) 183-199
60. Sullivan J.M., and Swift E. Effects of small-scale turbulence on the net growth rate and size of ten species of marine dinoflagellates. Journal of Phycology 39 1 (2003) 83-94
61. Sullivan J.M., Twardowski M.S., Donaghay P.L., and Freeman S. Using optical scattering to discriminate particle types in coastal waters. Applied Optics 44 9 (2005) 1667-1680
62. 2O) in the visible and near-IR wavelengths (400-750 nm). Applied Optics 45 21 (2006) 5294-5309
63. Terray E.A., Donelan M.A., Argawal Y.C., Drennan W.M., Kahma K.K., Williams III A.J., Hwang P.A., and Kitaigorodskii S.A. Estimates of kinetic energy dissipation under breaking waves. Journal of Physical Oceanography 26 (1996) 792-807
64. Thomas W.H., Vernet M., and Gibson C.H. Effects of small-scale turbulence on photosynthesis, pigmentation, cell division, and cell size in the marine dinoflagellate, Gonyaulax polyedra (Dinophyceae). Journal of Phycology 31 (1995) 50-59
65. Thorpe S.A. Turbulence and mixing in a Scottish loch. Philosophical Transactions of the Royal Society of London. Series A, Mathematical and Physical Sciences 286 1334 (1977) 125-181
66. Turner P., and Tester A. Toxic marine phytoplankton, zooplankton grazers, and pelagic food webs. Limnology and Oceanography 42 5 (1997) 1203-1214
67. Twardowski M.S., Boss E., Macdonald J.B., Pegau W.S., Barnard A.H., and Zaneveld J.R.V. A model for estimating bulk refractive index from the optical backscattering ratio and the implications for understanding particle composition in case I and case II waters. Journal of Geophysical Research 106 C7 (2001) 14,129-14,142
68. Twardowski M.S., Sullivan J.M., Donaghay P.L., and Zaneveld J.R.V. Microscale quantification of the absorption by dissolved and particulate material in coastal waters with an ac-9. Journal of Atmospheric and Oceanic Technology 16 (1999) 691-707
69. Velo-Suárez L., González-Gil S., Gentien P., Lunven M., Bechemin C., Fernand L., Raine R., and Reguera B. Thin layers of Pseudo-nitzschia spp. and the fate of Dinophysis acuminata during an upwelling-downwelling cycle in a Galician Ría. Limnology and Oceanography 53 5 (2008) 1816-1834
70. Wang Z., and Goodman L. On the evolution of the spatial structure of a thin phytoplankton layer into a turbulent field. Marine Ecology Progress Series 374 (2009) 57-74
71. Woodson C.B., Eerkes-Medrano D.I., Flores-Morales A., Foley M.M., Henkel S.K., Hessing-Lewis M., Jacinto D., Needles L., Nishizaki M.T., O'Leary J., Ostrander C.E., Pespeni M., Schwager K.B., Tyburczy J.A., Weersing K.A., Kirincich A.R., Barth J.A., McManus M.A., and Washburn L. Local diurnal upwelling driven by sea breezes in northern Monterey Bay. Continental Shelf Research 27 18 (2007) 2289-2302
72. Zaneveld J.R.V., Kitchen J.C., and Moore C.C. The scattering error correction of reflecting tube absorption meters. Ocean Optics XII. In: Ackleson S. (Ed). Proc. SPIE 2258 (1994) 44-55
73. Zaneveld J.R.V., and Pegau W.S. A model for reflectance of thin layers, fronts, and internal waves and its inversion. Oceanography 11 (1998) 44-47