Integrated measurements of acoustical and optical thin layers II: Horizontal length scales

Continental Shelf Research

Volumn 30, Issue 1, 2010, Pages 29-38

  Moline, Mark A ^a   Benoit Bird, Kelly J ^b   Robbins, Ian C ^a   Schroth Miller, Maddie ^a   Waluk, Chad M ^b   Zelenke, Brian ^a  

^a CALIFORNIA POLYTECHNIC STATE UNIVERSITY   (United States)

^b OREGON STATE UNIVERSITY   (United States)

Author keywords

Autocorrelation; Bio optics; Bioacoustics; Bioluminescence; Length scales; Thin layers

Indexed keywords

ACOUSTIC DATA; AUTOCORRELATION; AUTONOMOUS UNDERWATER VEHICLE; BIOLUMINESCENCE; COASTAL ZONE; COMMUNITY DYNAMICS; NUTRIENT AVAILABILITY; OPTICAL INSTRUMENT; PLANKTON; TROPHIC CONDITIONS; VERTICAL DISTRIBUTION;

CALIFORNIA; MONTEREY BAY; NORTH AMERICA; UNITED STATES;

EID: 72149102991     PISSN: 02784343     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.csr.2009.08.004     Document Type: Article

References (70)

1. Abraham E.R. The gernation of plankton patchiness by turbulent sturring. Nature 391 (1998) 577-580
2. Benoit-Bird, K.J., Moline, M.A., Waluk, C.M., Robbins, I.M., 2009. Integrated measurements of acoustical and optical thin layers I: Vertical scales of association. Continental Shelf Research, this issue, doi:10.1016/j.csr.2009.08.001.
3. Benoit-Bird K.J., Cowles T.J., and Wingard C.E. Edge gradients provide evidence of ecological interactions in planktonic thin layers. Limnology and Oceanography 54 (2009) 1382-1392
4. Bensky T., Clemo L., Gilbert C., Neff B., Moline M., and Rohan D. Observation of nanosecond laser induced fluorescence of in vitro seawater phytoplankton. Applied Optics 47 (2008) 3980-3986
5. Birch D.A., Young W.R., and Franks P.J.S. Thin layers of plankton: formation by shear and death by diffusion. Deep-Sea Research I 55 (2008) 277-295
6. Bissett W., Arnone R., Davis C., Dickey T., Dye D., Kohler D., and Gould R. From meters to kilometers: a look at ocean-color scales of variability, spatial coherence, and the need for fine-scale remote sensing in coastal ocean optics. Oceanography 17 (2004) 32-43
7. Blackwell S.M., Case J.F., Glenn S.M., Kohut J., Moline M.A., Purcell M., Schofield O., and von Alt C. A new AUV platform for studying near shore bioluminescence structure. In: Kricka L.J., and Stanley P.E. (Eds). Bioluminescence and Chemiluminescence Progress and Applications (2002), World Scientific 197-200
8. Blackwell, S., Moline, M., Schaffner, A., Garrison, T., Chang, G., 2008. Sub-kilometer length scales in coastal waters. Continental Shelf Research 28, 215-226.
9. Chang G., Dickey T., Schofield O., Weidemann A., Boss E., Pegau W., Moline M., and Glenn S. Nearshore physical forcing of bio-optical properties in the New York Bight. Journal of Geophysical Research 107 (2002) 3133
10. Cheriton O.M., McManus M.M., Holliday D.V., Greenlaw C.F., Donaghay P.L., and Cowles T.J. Effects of mesoscale physical processes on thin zooplankton layers at four sites along the west coast of the US. Estuaries and Coasts 30 (2007) 575-590
11. Churnside J., Sullivan J., Donaghay P., Rines J., McFarland M., Graff J., Holliday D., Greenlaw C., Franks P., and Jaffe J. 2000 km of thin layers. EOS Transactions, AGU 87 (2006) 36
12. Cowles T.J., Desiderio R.A., and Carr M.-E. Small-scale planktonic structure: persistence and trophic consequences. Oceanography 11 (1998) 4-9
13. Curtiss C., Langlois G., Busse L., Mazzillo F., and Silver M. The emergence of Cochlodinium along the California Coast (USA). Harmful Algae 7 (2007) 337-346
14. Dale A., Levine M., Barth J., and Austin J. A dye tracer reveals cross-shelf dispersion and interleaving on the Oregon shelf. Geophysical Research Letters 33 (2006) L03604
15. Dekshenieks M.M., Donaghay P.L., Sullivan J.M., Rines J.E.B., Osborn T.R., and Twardowski M.S. Temporal and spatial occurrence of phytoplankton thin layers in relation to physical processes. Marine Ecology Progress Series 223 (2001) 61-71
16. Denman K.L., and Powell T.M. Effects of physical processes on planktonic ecosystems in the coastal ocean. Oceanography and Marine Biology Annual Review 22 (1984) 125-168
17. Deutschman D., Bradshaw G.A., Childress W.M., Daly K., Grunbaum D., Pascual M., Schumaker N., and Wu J. Mechanisms of patch formation. In: Levin S.A., Powell T.M., and Steele J.H. (Eds). Patch Dynamics (1993), Springer Verlag, Berlin 184-209
18. Dickey T., Itsweire E., Moline M., and Perry M. Introduction to the limnology and oceanography special issue on autonomous and lagrangian platforms and sensors (ALPS). Limnology and Oceanography 53 (2008) 2057-2061
19. Donaghay P.L., Rines H.M., and Sieburth J.M.N. Simultaneous sampling of fine scale biological, chemical, and physical structure in stratified waters. Archives of Hydrobiology 36 (1992) 97-108
20. Farrell J., Pang S., and Li W. Chemical plume tracing via an autonomous underwater vehicle. IEEE Journal of Oceanic Engineering 30 (2005) 428-442
21. Foote, K.G., Vestnes, G., Maclennan, D.N., Simmonds, E.J., 1987. Calibration of acoustic instruments for fish density estimation: A practical guide. International Council for the Exploration of the Sea Cooperative Research Report 144, Copenhagen, p. 57.
22. Franks P.J.S. Thin layers of phytoplankton: a model of formation by near-inertial wave shear. Deep-Sea Research I 42 (1995) 75-91
23. Franks P.J.S., and Jaffe J.S. Microscale distributions of phytoplankton: initial results from a two-dimensional imaging fluorometer, OSST. Marine Ecology Progress Series 220 (2001) 59-72
24. Gallager S.M., Yamazaki H., and Davis C.S. Contribution of fine-scale vertical structure and swimming behavior to formation of plankton layers on Georges Bank. Marine Ecology Progress Series 276 (2004) 27-43
25. Hall S., and Raffaelli D. Food webs: theory and reality. Advances in Ecological Research 24 (1993) 187-239
26. Haury L., Wiebe P., Orr M., and Briscoe M. Tidally generated high-frequency internal wave packets and their effects on plankton in Massachusetts Bay. Journal of Marine Research 41 (1983) 65-112
27. Heisler J., Glibert P., Burkholder J., Anderson D., Cochlan W., Dennison W., Dortch Q., Gobler C., Heil C., and Humphries E. Eutrophication and harmful algal blooms: a scientific consensus. Harmful Algae 8 (2008) 3-13
28. Herren C.M., Haddock S.H.D., Johnson C.S., Orrico C.M., Moline M.A., and Case J.F. A multi-platform bathyphotometer for fine-scale, coastal bioluminescence research. Limnology and Oceanography: Methods 3 (2005) 247-262
29. Hibler L.F., Maxwell A.R., Miller L.M., Kohn N.P., Woodruff D.L., Montes M.J., Bowles J.H., and Moline M.A. Improved fine scale transport model performance using AUV and HSI feedback in a tidally dominated system. Journal of Geophysical Research 113 (2008) C08036 doi: 08010.01029/02008JC004739
30. Hodges B., and Rudnick D. Horizontal variability in chlorophyll fluorescence and potential temperature. Deep-Sea Research 53 (2006) 1460-1482
31. Holliday D.V., Donaghay P.L., Greenlaw C.F., McGehee D.E., McManus M.M., Sullivan J.M., and Miksis J.L. Advances in defining fine- and micro-scale pattern in marine plankton. Aquatic Living Resources 16 (2003) 131-136
32. Holliday D.V., Pieper R.E., Greenlaw C.F., and Dawson J.K. Acoustical sensing of small scale vertical structures in zooplankton assemblages. Oceanography 11 (1998)
33. Jester R., Lefebvre K., Langlois G., Vigilant V., Baugh K., and Silver M. A shift in the dominant toxin-producing algal species in central California alters phycotoxins in food webs. Harmful Algae 8 (2009) 291-298
34. Klausmeier C.A., and Litchman E. Algal games: the vertical distribution of phytoplankton in poorly mixed water columns. Limnology and Oceanography 46 (2001) 1998-2007
35. Lee C., Jones B., Brink K., and Fischer A. The upper-ocean response to monsoonal forcing in the Arabian Sea: seasonal and spatial variability. Deep-Sea Research Part II 47 (2000) 1177-1226
36. Lennert-Cody C., and Franks P. Fluorescence patches in high-frequency internal waves. Marine Ecology Progress Series 235 (2002) 29-42
37. Lennert-Cody C.E., and Franks P.J.S. Plankton patchiness in high-frequency internal waves. Marine Ecology Progress Series 186 (1999) 59-66
38. Levin S.A. The problem of pattern and scale in ecology. Ecology 73 (1992) 1943-1967
39. Lovejoy S., Currie W., Tessier Y., Claereboudt M., Bourget E., Roff J., and Schertzer D. Universal Multifractals and Ocean Patchiness: Phytoplankton, Physical Fields and Coastal Heterogeneity (2001), Oxford University Press, Oxford pp. 117-141
40. Mackas D., and Boyd C. Spectral analysis of zooplankton spatial heterogeneity. Science 204 (1979) 62-64
41. Mackas D.L., Denman K.L., and Abbott M.R. Plankton patchiness: biology in the physical vernacular. Bulletin of Marine Science 37 (1985) 652-674
42. McManus M.M., Alldredge A.L., Barnard A.H., Boss E., Case J.F., Cowles T.J., Donaghay P.L., Eisner L.B., Gifford D.J., Greenlaw C.F., Herren C.M., Holliday D.V., Johnson D., MacIntyre S., McGehee D.E., Osborn T.R., Perry M.J., Pieper R.E., Rines J.E.B., Smith C.D., Sullivan J.M., Talbot M.K., Twardowski M.S., Weidemann A., and Zaneveld J.R. Characteristics, distribution, and persistence of thin layers over a 48 h period. Marine Ecology Progress Series 261 (2003) 1-19
43. McManus M.M., Cheriton O.M., Drake P.J., Holliday D.V., Storlazzi C.D., Donaghay P.L., and Greenlaw C.F. Effects of physical processes on structure and transport of thin zooplankton layers in the coastal ocean. Marine Ecology Progress Series 301 (2005) 199-215
44. McManus M.M., Kudela R.M., Silver M.W., Steward G.F., Donaghay P.L., and Sullivan D.E. Cryptic blooms: are thin layers the missing connection?. Estuaries and Coasts 31 (2008) 396-401
45. Menden-Deuer S. Spatial and temporal characteristics of plankton-rich layers in a shallow, temperate fjord. Marine Ecology Progress Series 355 (2008) 21-30
46. Mitchell J., Yamazaki H., Seuront L., Wolk F., and Li H. Phytoplankton patch patterns: seascape anatomy in a turbulent ocean. Journal of Marine Systems 69 (2008) 247-253
47. Moline M.A., Blackwell S.B., Case J.F., Haddock S.H.D., Herren C.M., Orrico C.M., and Terrill E. Bioluminescence to reveal structure and interaction of coastal planktonic communities. Deep-Sea Research II 56 (2009) 232-245
48. Moline M.A., Blackwell S.M., Von Alt C., Allen B., Austin T., Case J.F., Forrester N., Goldsborough R., Purcell M., and Stokey R. Remote environmental monitoring units: an autonomous vehicle for characterizing coastal environments. Journal of Atmospheric and Oceanic Technology 22 (2005) 1797-1808
49. Moline M.A., Blackwell S.M., Chant R., Oliver M.J., Bergmann T., Glenn S., and Schofield O.M.E. Episodic physical forcing and the structure of phytoplankton communities in the coastal waters of New Jersey. Journal of Geophysical Research 109 (2004) C12S05 10.1029/2003JC001985
50. Moline M.A., Heine E., Case J.F., Herren C.M., and Schofield O. Spatial and temporal variability of bioluminescence potential in coastal regions. In: Case J.F., Herring P.J., Haddock S.H.D., Kricka L.J., and Stanley P.E. (Eds). Bioluminescence and Chemiluminescence 2000 (2001), World Scientific Publishing Company, Singapore 123-126
51. Ögren P., Fiorelli E., and Leonard N. Cooperative control of mobile sensor networks: adaptive gradient climbing in a distributed environment. IEEE Transactions on Automatic Control 49 (2004) 1292-1302
52. Omori M., and Hamner W. Patchy distribution of zooplankton: behavior, population assessment and sampling problems. Marine Biology 72 (1982) 193-200
53. Osborn T.R. Fine structure, microstructure, and thin layers. Oceanography 11 (1998) 36-38
54. Owen R. Microscale and finescale variations of small plankton in coastal and pelagic environments. Journal of Marine Research 47 (1989) 197-240
55. Py F., Ryan J., Rajan K., Sherman A., Bird L., Fox M., and Long D. Adaptive water sampling based on unsupervised clustering. EOS Transactions, AGU 88 (2007) 52
56. Rines J., McFarland M., Donaghay P., Sullivan J., and Graff J. Characterization of the Monterey Bay phytoplankton community during the 2005 LOCO (Layered Organization in the Coastal Ocean) experiment, and the importance of species-specific characteristics of the flora to the dynamics and properties of thin layers. EOS Transactions, AGU 87 (2006) 36
57. Rines J.E.B., Donaghay P.L., Dekshenieks M.M., Sullivan J.M., and Twardowski M.S. Thin layers and camouflage: hidden Pseudo-nitzschia populations in a fjord in the San Juan Islands, Washington, USA. Marine Ecology Progress Series 225 (2002) 123-137
58. Rines, J.E.B., McFarland, M., Donaghay, P.L., Sullivan, J.M., 2010. Thin layers and species-specific characterization of the phytoplankton community in Monterey Bay, California USA. Continental Shelf Research, this issue.
59. Rudnick D., Davis R., Eriksen C., Fratantoni D., and Perry M. Underwater gliders for ocean research. Marine Technology Society Journal 38 (2004) 73-84
60. Ryan J., Gower J., King S., Bissett W., Fischer A., Kudela R., Kolber Z., Mazzillo F., Rienecker E., and Chavez F. A coastal ocean extreme bloom incubator. Geophysical Research Letters 35 (2008) L12602 doi: 12610.11029/12008GL034081
61. Ryan J.P., McManus M.M., Paduan J.D., and Chavez F. Phytoplankton thin layers caused by shear in frontal zones of a coastal upwelling system. Marine Ecology Progress Series 354 (2008) 21-34
62. Ryan, J.P., McManus, M.A., Sullivan, J.M. Physical, chemical and biological forcing of phytoplankton thin-layer variability in Monterey Bay, California. Continental Shelf Research, this issue.
63. Stacey M.S., McManus M.M., and Steinbuck J. Convergences and divergences and thin layer formation and maintenance. Limnology and Oceanography 52 (2007) 1523-1532
64. Sullivan J.M., Twardowski M.S., Donaghay P.L., and Freeman S.A. Use of optical scattering to discriminate particle types in coastal waters. Applied Optics 44 (2005) 1667-1680
65. Sullivan, J.M., Donaghay, P.L., Rines, J.E.B., 2009. Coastal thin layer dynamics: consequences to biology and optics. Continental Shelf Research, this issue, doi:10.1016/j.csr.2009.07.009.
66. Tsuda A., Sugisaki H., Ishimaru T., Saino T., and Sato T. White-noise-like distribution of the oceanic copepod Neocalanus cristatus in the subarctic North Pacific. Marine Ecology Progress Series 97 (1993) 39-46
67. Wang, Z., Goodman, L. The evolution of a thin phytoplankton layer in strong turbulence. Continental Shelf Research, this issue, doi:10.1016/j.csr.2009.08.006.
68. Widder E.A., Johnsen S., Bernstein S.A., Case J.F., and Neilson D.J. Thin layers of bioluminescent copepods found at density discontinuities in the water column. Marine Biology 134 (1999) 429-437
69. Yoder J., and McClain C. Spatial scales in CZCS-chlorophyll imagery of the southeastern US continental shelf. Limnology and Oceanography 32 (1987) 929-941
70. Yu X., Dickey T., Bellingham J., Manov D., and Streitlien K. The application of autonomous underwater vehicles for interdisciplinary measurements in Massachusetts and Cape Cod Bays. Continental Shelf Research 22 (2002) 2225-2245