Statistical-mechanical study of evolution of robustness in noisy environments

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 80, Issue 5, 2009, Pages

  Sakata, Ayaka ^a   Hukushima, Koji ^a   Kaneko, Kunihiko ^a,b  

^a UNIVERSITY OF TOKYO   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EVOLUTIONARY PROCESS; EXPRESSION DYNAMICS; FOLDING DYNAMICS; INTERMEDIATE TEMPERATURES; LOW TEMPERATURES; MECHANICAL MODEL; MECHANICAL STUDY; NOISY ENVIRONMENT; SELECTION BASED; SINGLE MUTATION; SPIN GLASS-LIKE PHASE; STOCHASTIC PROCESS; TARGET PATTERNS; TARGET STRUCTURE; TIME STEP;

BIOLOGICAL SYSTEMS; HAMILTONIANS; HEALTH; PHASE TRANSITIONS; PLANTS (BOTANY); PROTEIN FOLDING; RANDOM PROCESSES; SPIN DYNAMICS; SPIN GLASS; STOCHASTIC SYSTEMS; TARGETS;

DYNAMICS;

EID: 71849109197     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.80.051919     Document Type: Article

References (28)

1. S. Saito, M. Sasai, and T. Yomo, Proc. Natl. Acad. Sci. U.S.A. 94, 11324 (1997). 10.1073/pnas.94.21.11324
2. L. W. Ancel, and W. Fontana, J. Exp. Zool. 288, 242 (2000). 10.1002/1097-010X(20001015)288:3<242::AID-JEZ5>3.0.CO;2-O
3. M. B. Elowitz, A. J. Levine, E. D. Siggia, and P. S. Swain, Science 297, 1183 (2002). 10.1126/science.1070919
4. C. R. Landry, B. Lemos, S. A. Rifkin, W. J. Dickinson, and D. J. Hartl, Science 317, 118 (2007). 10.1126/science.1140247
5. K. Sato, Y. Ito, T. Yomo, and K. Kaneko, Proc. Natl. Acad. Sci. U.S.A. 100, 14086 (2003). 10.1073/pnas.2334996100
6. M. Kaern, T. C. Elston, W. J. Blake, and J. J. Collins, Nat. Rev. Genet. 6, 451 (2005). 10.1038/nrg1615
7. U. Alon, M. G. Surette, N. Barkai, and S. Leibler, Nature (London) 397, 168 (1999). 10.1038/16483
8. S. Ciliberti, O. C. Martin, and A. Wagner, PLOS Comput. Biol. 3, e15 (2007). 10.1371/journal.pcbi.0030015
9. A. Wagner, Robustness and Evolvability in Living Systems (Princeton University Press, New Jersey, 2005).
10. J. Sun and M. W. Deem, Phys. Rev. Lett. 99, 228107 (2007). 10.1103/PhysRevLett.99.228107
11. K. Kaneko, Life: An Introduction to Complex Systems Biology (Springer-Verlag, Berlin, New York, 2006).
12. K. Kaneko, PLoS ONE 2, e434 (2007). 10.1371/journal.pone.0000434
13. K. Kaneko, Chaos 18, 026112 (2008). 10.1063/1.2912458
14. K. Kaneko and C. Furusawa, J. Theor. Biol. 240, 78 (2006). 10.1016/j.jtbi.2005.08.029
15. C. H. Waddington, The Strategy of the Genes (George Allen and Unwin LTD, Bristol, 1957).
16. N. Go, Annu. Rev. Biophys. Bioeng. 12, 183 (1983). 10.1146/annurev.bb.12. 060183.001151
17. J. D. Bryngelson and P. G. Wolynes, Proc. Natl. Acad. Sci. U.S.A. 84, 7524 (1987). 10.1073/pnas.84.21.7524
18. J. N. Onuchic and P. G. Wolynes, Curr. Opin. Struct. Biol. 14, 70 (2004). 10.1016/j.sbi.2004.01.009
19. F. Li, T. Long, Y. Lu, Q. Ouyang, and C. Tang, Proc. Natl. Acad. Sci. U.S.A. 101, 4781 (2004). 10.1073/pnas.0305937101
20. K. Kaneko, K. Sato, T. Michiue, K. Okabayashi, K. Ohnuma, H. Danno, and M. Asashima, J. Exp. Zool. 310B, 492 (2008). 10.1002/jez.b.21222
21. H. Nishimori, Statistical Physics of Spin Glasses and Information Processing: An Introduction (Oxford University Press, New York, 2001).
22. M. Mézard, G. Parisi, and M. A. Virasoro, Spin Glass Theory and Beyond (World Scientific, Singapore, 1987).
23. A. Sakata, K. Hukushima, and K. Kaneko, Phys. Rev. Lett. 102, 148101 (2009). 10.1103/PhysRevLett.102.148101
24. K. Hukushima and K. Nemoto, J. Phys. Soc. Jpn. 65, 1604 (1996). 10.1143/JPSJ.65.1604
25. D. C. Mattis, Phys. Lett. 56A, 421 (1976). 10.1016/0375-9601(76)90396-0
26. E. van Nimwegen, J. P. Crutchfield, and M. Huynen, Proc. Natl. Acad. Sci. U.S.A. 96, 9716 (1999). 10.1073/pnas.96.17.9716
27. R. W. Penney, A. C. C. Coolen, and D. Sherrington, J. Phys. A 26, 3681 (1993). 10.1088/0305-4470/26/15/018
28. V. Dotsenko, S. Franz, and M. Mézard, J. Phys. A 27, 2351 (1994). 10.1088/0305-4470/27/7/016