-
1
-
-
47749089525
-
Parametric analysis and abstraction of genetic regulatory networks
-
Proceedings of the 2nd Workshop on Concurrent Models in Molecular Biology, BioCONCUR'04, Comp. Sci. Amsterdam, Elsevier
-
Adélaïde, M., Sutre, G., 2004. Parametric analysis and abstraction of genetic regulatory networks. In: Proceedings of the 2nd Workshop on Concurrent Models in Molecular Biology, BioCONCUR'04. Electronic Notes in Theor. Comp. Sci. Amsterdam, Elsevier.
-
(2004)
Electronic Notes in Theor
-
-
Adélaïde, M.1
Sutre, G.2
-
2
-
-
36949019568
-
Hybrid Modelling and Dynamical Analysis of Gene Regulatory Networks With Delays
-
Karger Publisher
-
Ahmad, J., Bernot, G., Comet, J.-P., Lime, D., Roux, O., 2007. Hybrid Modelling and Dynamical Analysis of Gene Regulatory Networks With Delays. ComPlexUs, Karger Publisher, vol. 3, no. 4, pp. 231-251.
-
(2007)
ComPlexUs
, vol.3
, Issue.4
, pp. 231-251
-
-
Ahmad, J.1
Bernot, G.2
Comet, J.-P.3
Lime, D.4
Roux, O.5
-
3
-
-
0028413052
-
A theory of timed automata
-
Alur R., and Dill D.L. A theory of timed automata. Theor. Comput. Sci. 126 (1994) 183-235
-
(1994)
Theor. Comput. Sci.
, vol.126
, pp. 183-235
-
-
Alur, R.1
Dill, D.L.2
-
4
-
-
0023430342
-
Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli
-
Balke V., and Gralla J. Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli. J. Bacteriol. 169 10 (1987) 4499-4506
-
(1987)
J. Bacteriol.
, vol.169
, Issue.10
, pp. 4499-4506
-
-
Balke, V.1
Gralla, J.2
-
5
-
-
84860513120
-
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli
-
Batt G., Ropers D., de Jong H., Geiselmann J., Mateescu R., Page M., and Schneider D. Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli. Bioinformatics 21 Suppl. 1 (2005) i19-i28
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Batt, G.1
Ropers, D.2
de Jong, H.3
Geiselmann, J.4
Mateescu, R.5
Page, M.6
Schneider, D.7
-
6
-
-
3042693879
-
Application of formal methods to biological regulatory networks: extending Thomas' asynchronous logical approach with temporal logic
-
Bernot G., Comet J.-P., Richard A., and Guespin J. Application of formal methods to biological regulatory networks: extending Thomas' asynchronous logical approach with temporal logic. J. Theor. Biol. 229 3 (2004) 339-347
-
(2004)
J. Theor. Biol.
, vol.229
, Issue.3
, pp. 339-347
-
-
Bernot, G.1
Comet, J.-P.2
Richard, A.3
Guespin, J.4
-
7
-
-
0036069537
-
Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model
-
Chang D., Smalley D., and Conway T. Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model. Mol. Microbiol. 45 2 (2002) 289-306
-
(2002)
Mol. Microbiol.
, vol.45
, Issue.2
, pp. 289-306
-
-
Chang, D.1
Smalley, D.2
Conway, T.3
-
8
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: a literature review
-
doi: 10.1089/10665270252833208
-
de Jong H. Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol. 9 1 (2002) 67-103 doi: 10.1089/10665270252833208
-
(2002)
J. Comput. Biol.
, vol.9
, Issue.1
, pp. 67-103
-
-
de Jong, H.1
-
9
-
-
1242333310
-
Qualitative simulation of genetic regulatory networks using piecewise-linear models
-
de Jong H., Gouzé J.L., Hernandez C., Page M., Sari T., and Geiselmann J. Qualitative simulation of genetic regulatory networks using piecewise-linear models. Bull. Math. Biol. 66 2 (2004) 301-340
-
(2004)
Bull. Math. Biol.
, vol.66
, Issue.2
, pp. 301-340
-
-
de Jong, H.1
Gouzé, J.L.2
Hernandez, C.3
Page, M.4
Sari, T.5
Geiselmann, J.6
-
10
-
-
84880869346
-
Qualitative simulation of genetic regulatory networks: Method and application
-
Nebel, B, Ed, Morgan Kaufmann, San Mateo, CA, pp
-
de Jong, H., Page, M., Hernandez, C., Geiselmann, J., 2001. Qualitative simulation of genetic regulatory networks: method and application. In: Nebel, B. (Ed.), Proceedings of the Seventeenth International Joint Conference on Artificial Intelligence, IJCAI'01. Morgan Kaufmann, San Mateo, CA, pp. 67-73.
-
(2001)
Proceedings of the Seventeenth International Joint Conference on Artificial Intelligence, IJCAI'01
, pp. 67-73
-
-
de Jong, H.1
Page, M.2
Hernandez, C.3
Geiselmann, J.4
-
11
-
-
0015609281
-
The logical analysis of continuous non linear biochemical control networks
-
Glass L., and Kauffman S.A. The logical analysis of continuous non linear biochemical control networks. J. Theor. Biol. 1 39 (1973) 103-129
-
(1973)
J. Theor. Biol.
, vol.1
, Issue.39
, pp. 103-129
-
-
Glass, L.1
Kauffman, S.A.2
-
12
-
-
0036953237
-
DNA topology-mediated control of global gene expression in Escherichia coli
-
doi: 10.1146/annurev.genet.36.032902.111815
-
Hatfield G.W., and Benham C.J. DNA topology-mediated control of global gene expression in Escherichia coli. Annu. Rev. Genet. 36 (2002) 175-203 doi: 10.1146/annurev.genet.36.032902.111815
-
(2002)
Annu. Rev. Genet.
, vol.36
, pp. 175-203
-
-
Hatfield, G.W.1
Benham, C.J.2
-
13
-
-
84947944522
-
Algorithmic analysis of nonlinear hybrid systems
-
CAV: Computer-Aided Verification, Springer, pp
-
Henzinger, T.A., Ho, P.-H., 1995. Algorithmic analysis of nonlinear hybrid systems. CAV: Computer-Aided Verification, Lecture Notes in Computer Science 939. Springer, pp. 225-238.
-
(1995)
Lecture Notes in Computer Science
, vol.939
, pp. 225-238
-
-
Henzinger, T.A.1
Ho, P.-H.2
-
15
-
-
33646377419
-
Qualitative simulation of the carbon starvation response in Escherichia coli
-
doi: 10.1016/j.biosystems.2005.10.005
-
Ropers D., de Jong H., Page M., Schneider D., and Geiselmann J. Qualitative simulation of the carbon starvation response in Escherichia coli. Biosystems 2 84 (2006) 124-152 doi: 10.1016/j.biosystems.2005.10.005
-
(2006)
Biosystems
, vol.2
, Issue.84
, pp. 124-152
-
-
Ropers, D.1
de Jong, H.2
Page, M.3
Schneider, D.4
Geiselmann, J.5
-
16
-
-
33845198572
-
Incorporating time delays into the logical analysis of gene regulatory networks
-
Computational Methods in Systems Biology, CMSB'06, Corrado Priami, Trento, Italy, Springer
-
Siebert, H., Bockmayr, A., 2006. Incorporating time delays into the logical analysis of gene regulatory networks. Computational Methods in Systems Biology, CMSB'06, Corrado Priami, Trento, Italy, Lecture Notes in Computer Science, Springer, vol. 4210, pp. 169-183.
-
(2006)
Lecture Notes in Computer Science
, vol.4210
, pp. 169-183
-
-
Siebert, H.1
Bockmayr, A.2
-
17
-
-
39049120743
-
Temporal constraints in the logical analysis of regulatory networks
-
Siebert H., and Bockmayr A. Temporal constraints in the logical analysis of regulatory networks. Theor. Comput. Sci. 391 3 (2008) 258-275
-
(2008)
Theor. Comput. Sci.
, vol.391
, Issue.3
, pp. 258-275
-
-
Siebert, H.1
Bockmayr, A.2
-
18
-
-
0024916497
-
Qualitative dynamics of a piecewise-linear differential equations: a discrete mapping approach
-
Snoussi E.H. Qualitative dynamics of a piecewise-linear differential equations: a discrete mapping approach. Dyn. Stab. Syst. 4 3 & 4 (1989) 189-207
-
(1989)
Dyn. Stab. Syst.
, vol.4
, Issue.3-4
, pp. 189-207
-
-
Snoussi, E.H.1
-
19
-
-
0001723411
-
Logical identification of all steady states: the concept of feedback loop characteristic states
-
Snoussi E.H., and Thomas R. Logical identification of all steady states: the concept of feedback loop characteristic states. Bull. Math. Biol. 55 5 (1993) 973-991
-
(1993)
Bull. Math. Biol.
, vol.55
, Issue.5
, pp. 973-991
-
-
Snoussi, E.H.1
Thomas, R.2
-
20
-
-
0025948178
-
Regulatory networks seen as asynchronous automata: a logical description
-
Thomas R. Regulatory networks seen as asynchronous automata: a logical description. J. Theor. Biol. 153 (1991) 1-23
-
(1991)
J. Theor. Biol.
, vol.153
, pp. 1-23
-
-
Thomas, R.1
-
22
-
-
0029267491
-
Dynamical behaviour of biological regulatory networks: I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
-
Thomas R., Thieffry D., and Kaufman M. Dynamical behaviour of biological regulatory networks: I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bull. Math. Biol. 57 2 (1995) 247-276
-
(1995)
Bull. Math. Biol.
, vol.57
, Issue.2
, pp. 247-276
-
-
Thomas, R.1
Thieffry, D.2
Kaufman, M.3
-
23
-
-
0035082155
-
DNA supercoiling and transcription in Escherichia coli: the FIS connection
-
doi: 10.1016/S0300-9084(00)01217-7
-
Travers A., Schneider R., and Muskhelishvili G. DNA supercoiling and transcription in Escherichia coli: the FIS connection. Biochimie 2 (2001) 1213-1217 doi: 10.1016/S0300-9084(00)01217-7
-
(2001)
Biochimie
, vol.2
, pp. 1213-1217
-
-
Travers, A.1
Schneider, R.2
Muskhelishvili, G.3
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