-
3
-
-
0035236048
-
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles
-
Friedman C., Kra P., Yu H., Krauthammer M., and Rzhetsky A. GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. Bioinformatics 17 Suppl 1 (2001) S74-S82
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Friedman, C.1
Kra, P.2
Yu, H.3
Krauthammer, M.4
Rzhetsky, A.5
-
5
-
-
0033657546
-
EDGAR: extraction of drugs, genes and relations from the biomedical literature
-
Rindflesch T., Tanabe L., Weinstein J., and Hunter L. EDGAR: extraction of drugs, genes and relations from the biomedical literature. Proceedings of the Fifth Pacific Symposium on Biocomputing (PSB'03) (2000) 517-528
-
(2000)
Proceedings of the Fifth Pacific Symposium on Biocomputing (PSB'03)
, pp. 517-528
-
-
Rindflesch, T.1
Tanabe, L.2
Weinstein, J.3
Hunter, L.4
-
6
-
-
0035104866
-
Automated extraction of information on protein-protein interactions from the biological literature
-
Ono T., Hishigaki H., Tanigami A., and Takagi T. Automated extraction of information on protein-protein interactions from the biological literature. Bioinformatics 17 2 (2001) 155-161
-
(2001)
Bioinformatics
, vol.17
, Issue.2
, pp. 155-161
-
-
Ono, T.1
Hishigaki, H.2
Tanigami, A.3
Takagi, T.4
-
7
-
-
47349096093
-
Large-scale extraction of protein/gene relations for model organisms
-
Saric J., Jensen L., Ouzounova R., Rojas I., and Bork P. Large-scale extraction of protein/gene relations for model organisms. First International Symposium on Semantic Mining in Biomedicine (2005) 50
-
(2005)
First International Symposium on Semantic Mining in Biomedicine
, pp. 50
-
-
Saric, J.1
Jensen, L.2
Ouzounova, R.3
Rojas, I.4
Bork, P.5
-
8
-
-
33847253112
-
Learning Language in Logic - Genic interaction extraction challenge
-
J, Cussens, C, Nédellec, Eds
-
C. Nédellec, Learning Language in Logic - Genic interaction extraction challenge, In: J., Cussens, C., Nédellec, (Eds.), Proceedings of the Fourth Learning Language in Logic Workshop (LLL05), 2005. 31-37.
-
(2005)
Proceedings of the Fourth Learning Language in Logic Workshop (LLL05)
, pp. 31-37
-
-
Nédellec, C.1
-
9
-
-
33847294345
-
RelEx - Relation extraction using dependency parse trees
-
Fundel K., Küffner R., and Zimmer R. RelEx - Relation extraction using dependency parse trees. Bioinformatics 23 3 (2007) 365-371
-
(2007)
Bioinformatics
, vol.23
, Issue.3
, pp. 365-371
-
-
Fundel, K.1
Küffner, R.2
Zimmer, R.3
-
10
-
-
44649178742
-
New challenges for text mining: mapping between text and manually curated pathways
-
Oda K., Kim J.-D., Ohta T., Okanohara D., Matsuzaki T., Tateisi Y., and Tsujii J. New challenges for text mining: mapping between text and manually curated pathways. BMC Bioinformatics 9 Suppl 3 (2008) S5
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 3
-
-
Oda, K.1
Kim, J.-D.2
Ohta, T.3
Okanohara, D.4
Matsuzaki, T.5
Tateisi, Y.6
Tsujii, J.7
-
11
-
-
0012982542
-
Ontological engineering: A state of the art
-
Gómez-Pérez A. Ontological engineering: A state of the art. Expert Update 2 3 (1999) 33-43
-
(1999)
Expert Update
, vol.2
, Issue.3
, pp. 33-43
-
-
Gómez-Pérez, A.1
-
14
-
-
0036706501
-
Two biomedical sublanguages: a description based on the theories of Zellig Harris
-
Friedman C., Kra P., and Rzhetsky A. Two biomedical sublanguages: a description based on the theories of Zellig Harris. Journal of Biomedical Informatics 35 4 (2002) 222-235
-
(2002)
Journal of Biomedical Informatics
, vol.35
, Issue.4
, pp. 222-235
-
-
Friedman, C.1
Kra, P.2
Rzhetsky, A.3
-
15
-
-
80053064206
-
LexOnto: A model for ontology lexicons for ontology-based NLP
-
P. Cimiano, P. Haase, M. Herold, M. Mantel, P. Buitelaar, LexOnto: A model for ontology lexicons for ontology-based NLP, In: Proceedings of the OntoLex07 Workshop held in conjunction with ISWC'07, 2007.
-
(2007)
Proceedings of the OntoLex07 Workshop held in conjunction with ISWC'07
-
-
Cimiano, P.1
Haase, P.2
Herold, M.3
Mantel, M.4
Buitelaar, P.5
-
16
-
-
33745254585
-
SKOS core vocabulary specification
-
Nov
-
D. Brickley, A. Miles, SKOS core vocabulary specification, W3C working draft, W3C (Nov. 2005).
-
(2005)
W3C working draft
, vol.W3C
-
-
Brickley, D.1
Miles, A.2
-
17
-
-
0036678776
-
Tagging gene and protein names in biomedical text
-
Tanabe L., and Wilbur W. Tagging gene and protein names in biomedical text. Bioinformatics 18 8 (2002) 1124-1132
-
(2002)
Bioinformatics
, vol.18
, Issue.8
, pp. 1124-1132
-
-
Tanabe, L.1
Wilbur, W.2
-
18
-
-
41549130556
-
Named Entity Recognition
-
Artech House Books, Norwood, MA
-
Park J., and Kim J.-J. Named Entity Recognition. Text Mining for Biology (2006), Artech House Books, Norwood, MA
-
(2006)
Text Mining for Biology
-
-
Park, J.1
Kim, J.-J.2
-
19
-
-
84860536484
-
Semantic retrieval for the accurate identification of relational concepts in massive textbases
-
Miyao Y., Ohta T., Masuda K., Tsuruoka Y., Yoshida K., Ninomiya T., and Tsujii J. Semantic retrieval for the accurate identification of relational concepts in massive textbases. Proceedings of COLING-ACL (2006) 1017-1024
-
(2006)
Proceedings of COLING-ACL
, pp. 1017-1024
-
-
Miyao, Y.1
Ohta, T.2
Masuda, K.3
Tsuruoka, Y.4
Yoshida, K.5
Ninomiya, T.6
Tsujii, J.7
-
20
-
-
19944402951
-
Large-scale extraction of gene regulation for model organisms in an ontological context
-
J. Saric, L.J. Jensen, I. Rojas, Large-scale extraction of gene regulation for model organisms in an ontological context., In Silico Biology 5.
-
Silico Biology
, vol.5
-
-
Saric, J.1
Jensen, L.J.2
Rojas, I.3
-
21
-
-
19944432046
-
Event-based information extraction for the biomedical domain: The Caderige project
-
E. Alphonse, S. Aubin, P. Bessières, G. Bisson, T. Hamon, S. Lagarrigue, A. Nazarenko, A.-P. Manine, C. Nédellec, M.O.A. Vetah, T. Poibeau, D. Weissenbacher, Event-based information extraction for the biomedical domain: the Caderige project, In: Proceedings of the International Workshop on Natural Language Processing in Biomedicine and its Applications (JNLPBA), 2004. 43-49.
-
(2004)
Proceedings of the International Workshop on Natural Language Processing in Biomedicine and its Applications (JNLPBA)
, pp. 43-49
-
-
Alphonse, E.1
Aubin, S.2
Bessières, P.3
Bisson, G.4
Hamon, T.5
Lagarrigue, S.6
Nazarenko, A.7
Manine, A.-P.8
Nédellec, C.9
Vetah, M.O.A.10
Poibeau, T.11
Weissenbacher, D.12
-
22
-
-
1842559914
-
Extracting human protein interactions from MEDLINE using a full-sentence parser
-
Daraselia N., Yuryev A., Egorov S., Novichkova S., Nikitin A., and Mazo I. Extracting human protein interactions from MEDLINE using a full-sentence parser. Bioinformatics 20 5 (2004) 604-611
-
(2004)
Bioinformatics
, vol.20
, Issue.5
, pp. 604-611
-
-
Daraselia, N.1
Yuryev, A.2
Egorov, S.3
Novichkova, S.4
Nikitin, A.5
Mazo, I.6
-
23
-
-
71849085363
-
-
D. McGuinness, F. van Harmelen, OWL web ontology language overview: W3C recommendation 10, Tech. rep., W3C (February 2004).
-
D. McGuinness, F. van Harmelen, OWL web ontology language overview: W3C recommendation 10, Tech. rep., W3C (February 2004).
-
-
-
-
24
-
-
71849113413
-
-
P. Cimiano, Ontology-driven discourse analysis in GenIE., In: A., Düsterhöft, B., Thalheim, (Eds.), Proceedings of the Eighth International Conference on Applications of Natural Language to Information Systems, 29 of LNI, GI, 2003. 77-90.
-
P. Cimiano, Ontology-driven discourse analysis in GenIE., In: A., Düsterhöft, B., Thalheim, (Eds.), Proceedings of the Eighth International Conference on Applications of Natural Language to Information Systems, Vol. 29 of LNI, GI, 2003. 77-90.
-
-
-
-
25
-
-
0037250015
-
Protein structures and information extraction from biological texts: The PASTA system
-
Gaizauskas R., Demetriou G., Artymiuk P., and Willett P. Protein structures and information extraction from biological texts: The PASTA system. Bioinformatics 19 1 (2003) 135-143
-
(2003)
Bioinformatics
, vol.19
, Issue.1
, pp. 135-143
-
-
Gaizauskas, R.1
Demetriou, G.2
Artymiuk, P.3
Willett, P.4
-
26
-
-
84874277359
-
Combining multiple layers of syntactic information for protein-protein interaction extraction
-
Turku Centre for Computer Science (TUCS)
-
Miwa M., Sætre R., Miyao Y., Ohta T., and Tsujii J. Combining multiple layers of syntactic information for protein-protein interaction extraction. Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM) (2008), Turku Centre for Computer Science (TUCS) 101-108
-
(2008)
Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM)
, pp. 101-108
-
-
Miwa, M.1
Sætre, R.2
Miyao, Y.3
Ohta, T.4
Tsujii, J.5
-
27
-
-
57649166594
-
Le terme: entre ontologie et linguistique
-
CILF
-
Rastier F. Le terme: entre ontologie et linguistique. La banque des mots (1995), CILF 35-65
-
(1995)
La banque des mots
, pp. 35-65
-
-
Rastier, F.1
-
28
-
-
71849107901
-
-
D. Bourigault, C. Jacquemin, Construction de ressources terminologiques, In: J.-M., Pierrel, (Ed.), Ingénierie des langues, Hermès Science, 2000. 215-233.
-
D. Bourigault, C. Jacquemin, Construction de ressources terminologiques, In: J.-M., Pierrel, (Ed.), Ingénierie des langues, Hermès Science, 2000. 215-233.
-
-
-
-
29
-
-
12344328483
-
Extracting gene pathway relations using a hybrid grammar: the arizona relation parser
-
McDonald D., Chen H., Su H., and Marshall B. Extracting gene pathway relations using a hybrid grammar: the arizona relation parser. Bioinformatics 20 18 (2004) 3370-3378
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3370-3378
-
-
McDonald, D.1
Chen, H.2
Su, H.3
Marshall, B.4
-
31
-
-
15744399508
-
Analysis of link grammar on biomedical dependency corpus targeted at protein-protein interactions
-
Pyysalo S., Ginter F., Pahikkala T., Koivula J., Boberg J., Järvinen J., and Salakoski T. Analysis of link grammar on biomedical dependency corpus targeted at protein-protein interactions. Proceedings of Joint Workshop on Natural Language Processing in Biomedicine and its Applications (JNLPBA'04) (2004) 15-21
-
(2004)
Proceedings of Joint Workshop on Natural Language Processing in Biomedicine and its Applications (JNLPBA'04)
, pp. 15-21
-
-
Pyysalo, S.1
Ginter, F.2
Pahikkala, T.3
Koivula, J.4
Boberg, J.5
Järvinen, J.6
Salakoski, T.7
-
32
-
-
71849091531
-
-
D. Brickley, R. Guha, http://www.w3.org/TR/rdf-schema/ RDF vocabulary description language 1.0: RDF schema: W3C recommendation 10, Technical report, W3C, Cambridge, MA (February 2004). http://www.w3.org/TR/rdf-schema/.
-
D. Brickley, R. Guha, http://www.w3.org/TR/rdf-schema/ RDF vocabulary description language 1.0: RDF schema: W3C recommendation 10, Technical report, W3C, Cambridge, MA (February 2004). http://www.w3.org/TR/rdf-schema/.
-
-
-
-
33
-
-
33746034127
-
A multilingual/multimedia lexicon model for ontologies
-
Sure Y., and Domingue J. (Eds), Springer-Verlag
-
Buitelaar P., Sintek M., and Kiesel M. A multilingual/multimedia lexicon model for ontologies. In: Sure Y., and Domingue J. (Eds). ESWC, Vol. 4011 of Lecture Notes in Computer Science (2006), Springer-Verlag 502-513
-
(2006)
ESWC, Vol. 4011 of Lecture Notes in Computer Science
, pp. 502-513
-
-
Buitelaar, P.1
Sintek, M.2
Kiesel, M.3
-
34
-
-
0028429573
-
Inductive logic programming: theory and methods
-
Muggleton S., and Raedt L.D. Inductive logic programming: theory and methods. Journal of Logic Programming 19,20 (1994) 629-679
-
(1994)
Journal of Logic Programming
, vol.19-20
, pp. 629-679
-
-
Muggleton, S.1
Raedt, L.D.2
-
37
-
-
71849101224
-
-
S. Aubin, LLL challenge - Syntactic analysis guidelines, Tech. rep., LIPN, Université Paris 13, Villetaneuse (2005).
-
S. Aubin, LLL challenge - Syntactic analysis guidelines, Tech. rep., LIPN, Université Paris 13, Villetaneuse (2005).
-
-
-
|