Extracting Biochemical Interactions from MEDLINE Using a Link Grammar Parser

Proceedings of the International Conference on Tools with Artificial Intelligence

Volumn , Issue , 2003, Pages 467-471

  Ding, Jing ^a   Berleant, Daniel ^a   Xu, Jun ^b   Fulmer, Andy W ^b  

^a Iowa State University of Science and Technology   (United States)

^b PROCTER AND GAMBLE COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL INTERACTIONS; LINK GRAMMAR PARSER (LGP);

ALGORITHMS; COMPUTATIONAL COMPLEXITY; CONTEXT FREE GRAMMARS; INFORMATION RETRIEVAL; NATURAL LANGUAGE PROCESSING SYSTEMS; POLYNOMIALS; PROBLEM SOLVING; SYNTACTICS;

BIOCHEMICAL ENGINEERING;

EID: 0344666733     PISSN: 10636730     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (11)

1. Blaschke, C., M. Andrade, C. Ouzounis, and A. Valencia (1999) Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions. AAAI Conference on Intelligent Systems in Molecular Biology 60-67.
2. Ding, J. (2003) PathBinder: A Sentence Repository of Biochemical Interactions Extracted from MEDLINE (MS thesis). Iowa State University, Ames, IA.
3. Ding, J., D. Berleant, D. Nettleton, and E. Wurtele (2002) Mining MEDLINE: Abstracts, Sentences, or Phrases? Pacific Symposium on Biocomputing 7: 326-337.
4. Grinberg, D., J. Lafferty, and D. Sleator (1995) A Robust Parsing Algorithm for Link Grammars. Proceedings of the Fourth International Workshop on Parsing Technologies.
5. Leroy, G. and H. Chen (2002) Filling Preposition-Based Templates to Capture Information from Medical Abstracts. Pacific Symposium on Biocomputing 1: 350-361.
6. Ng, S.-K. and M. Wong (1999) Toward Routine Automatic Pathway Discovery from On-Line Scientific Text Abstracts. Genome Informatics 10: 104-112.
7. Park, J.C., H.S. Kim, and J.J. Kim (2001) Bidirectional Incremental Parsing for Automatic Pathway Identification with Combinatory Categorial Grammar. Pacific Symposium on Biocomputing 6: 396-407.
8. Sleator, D. and D. Temperley (1993) Parsing English with a Link Grammar. Third International Workshop on Parsing Technologies.
9. Temperley, D., D. Sleator, and J. Lafferty Link Grammar Parser Online Demo. http://www.link.cs.cmu.edu/link/submit-sentence-4.html
10. Wong, L. (2001) PIES, a Protein Interaction Extraction System. Pacific Symposium on Biocomputing 6.
11. Yakushiji, A., Y. Tateisi, Y. Miyao, and J. Tsujii (2001) Event Extraction from Biomedical Papers Using a Full Parser. Pacific Symposium on Biocomputing 6: 408-419.